Wall clock time and date at job start Sun Mar 29 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48501 * 109.47245 * 274.35542 * 3 2 1 5 5 H 1.48503 * 109.47218 * 34.35640 * 3 2 1 6 6 H 1.48504 * 109.46956 * 154.35458 * 3 2 1 7 7 C 1.38805 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00376 * 162.69408 * 7 2 1 9 9 N 1.36938 * 119.99836 * 342.69176 * 7 2 1 10 10 C 1.46927 * 120.66021 * 332.08104 * 9 7 2 11 11 C 1.52720 * 109.11126 * 233.88142 * 10 9 7 12 12 C 1.53097 * 109.37057 * 305.25940 * 11 10 9 13 13 C 1.52683 * 109.58696 * 60.62065 * 12 11 10 14 14 C 1.53973 * 109.82204 * 60.69241 * 13 12 11 15 15 C 1.54950 * 104.11750 * 95.92154 * 14 13 12 16 16 C 1.54911 * 102.78801 * 37.69781 * 15 14 13 17 17 C 1.53568 * 110.04476 * 178.11954 * 13 12 11 18 18 C 1.47002 * 120.66292 * 152.36679 * 9 7 2 19 19 H 0.96999 * 120.00305 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.57520 * 353.74753 * 10 9 7 21 21 H 1.09001 * 109.57176 * 114.12444 * 10 9 7 22 22 H 1.08992 * 109.57325 * 185.21855 * 11 10 9 23 23 H 1.08995 * 109.37697 * 65.17459 * 11 10 9 24 24 H 1.09003 * 109.45077 * 300.58362 * 12 11 10 25 25 H 1.09000 * 109.43234 * 180.64928 * 12 11 10 26 26 H 1.08997 * 110.49554 * 214.58474 * 14 13 12 27 27 H 1.09001 * 110.50024 * 337.26145 * 14 13 12 28 28 H 1.08995 * 110.75356 * 279.36996 * 15 14 13 29 29 H 1.09005 * 110.74970 * 156.02192 * 15 14 13 30 30 H 1.09002 * 110.48364 * 203.55347 * 16 15 14 31 31 H 1.09002 * 110.60061 * 80.96828 * 16 15 14 32 32 H 1.08997 * 110.05882 * 359.97438 * 17 13 12 33 33 H 1.08997 * 110.05311 * 121.41887 * 17 13 12 34 34 H 1.09000 * 109.58125 * 246.79986 * 18 9 7 35 35 H 1.09004 * 109.58044 * 7.06771 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4056 2.0997 -1.3960 5 1 1.4966 2.6244 0.7901 6 1 3.5907 1.4154 0.6060 7 6 2.0102 -1.2021 -0.0005 8 1 3.0536 -1.2232 -0.2788 9 7 1.3721 -2.3613 0.3518 10 6 0.2301 -2.3368 1.2759 11 6 0.4999 -3.3002 2.4298 12 6 0.8155 -4.6891 1.8684 13 6 2.0581 -4.6137 0.9844 14 6 3.2617 -4.1327 1.8155 15 6 3.9773 -5.4410 2.2365 16 6 3.8260 -6.3342 0.9799 17 6 2.4118 -6.0104 0.4531 18 6 1.8198 -3.6557 -0.1822 19 1 -0.4850 0.8400 0.0004 20 1 0.0988 -1.3281 1.6675 21 1 -0.6726 -2.6464 0.7492 22 1 -0.3799 -3.3580 3.0705 23 1 1.3496 -2.9406 3.0100 24 1 -0.0295 -5.0424 1.2774 25 1 0.9969 -5.3803 2.6915 26 1 3.9225 -3.5145 1.2079 27 1 2.9238 -3.5827 2.6939 28 1 3.4806 -5.8940 3.0944 29 1 5.0292 -5.2535 2.4526 30 1 3.9007 -7.3877 1.2495 31 1 4.5787 -6.0779 0.2343 32 1 1.6972 -6.7442 0.8259 33 1 2.4097 -6.0073 -0.6368 34 1 1.0528 -4.0645 -0.8400 35 1 2.7457 -3.5197 -0.7411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307017119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:29 Heat of formation + Delta-G solvation = -1.702924 kcal Electronic energy + Delta-G solvation = -14780.951726 eV Core-core repulsion = 12585.302346 eV Total energy + Delta-G solvation = -2195.649380 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.18508 -35.35896 -32.48390 -30.44742 -29.38513 -28.17548 -25.21021 -23.79088 -22.08351 -20.73392 -19.79745 -17.49596 -16.59058 -15.15676 -14.83286 -14.70324 -13.75946 -13.38084 -12.97057 -12.71344 -12.67591 -12.22770 -11.94078 -11.10796 -10.97136 -10.81505 -10.72447 -10.54573 -10.50596 -10.25965 -10.15138 -9.99424 -9.91924 -9.62005 -9.31667 -9.24389 -8.37958 -6.56111 -5.71705 -3.12787 3.40446 3.47657 3.50262 4.54718 4.99298 5.10725 5.16197 5.44391 5.63405 5.72042 5.78106 5.88903 5.90255 6.00008 6.06192 6.12060 6.22880 6.35692 6.36614 6.43585 6.48775 6.64098 6.68280 6.74446 6.82214 6.90375 7.01666 7.12091 7.14135 7.49877 7.75084 7.85921 8.52466 9.29063 9.93464 10.51144 11.36593 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043240 B = 0.010137 C = 0.009281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.394378 B = 2761.567470 C = 3016.248116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.899 3.101 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.246 4.246 8 H 0.063 0.937 9 N -0.589 5.589 10 C 0.171 3.829 11 C -0.146 4.146 12 C -0.094 4.094 13 C -0.077 4.077 14 C -0.101 4.101 15 C -0.127 4.127 16 C -0.122 4.122 17 C -0.114 4.114 18 C 0.160 3.840 19 H 0.252 0.748 20 H 0.085 0.915 21 H 0.014 0.986 22 H 0.045 0.955 23 H 0.057 0.943 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.013 0.987 35 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.293 -9.979 3.789 11.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.729 3.271 4 H -0.216 1.216 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.376 4.376 8 H 0.081 0.919 9 N -0.312 5.312 10 C 0.045 3.955 11 C -0.185 4.185 12 C -0.131 4.131 13 C -0.079 4.079 14 C -0.138 4.138 15 C -0.165 4.165 16 C -0.159 4.159 17 C -0.153 4.153 18 C 0.034 3.966 19 H 0.062 0.938 20 H 0.103 0.897 21 H 0.032 0.968 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.031 0.969 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 4.178 -9.811 3.768 11.310 hybrid contribution 0.327 0.866 -0.028 0.926 sum 4.504 -8.945 3.740 10.691 Atomic orbital electron populations 1.70047 1.05232 1.25268 1.54275 1.25008 0.95237 0.98282 1.01303 0.86335 0.79246 0.83995 0.77546 1.21574 1.21637 1.20488 1.19157 0.92552 0.84920 1.40935 0.91899 1.44009 1.35886 1.01220 1.50052 1.20648 0.88577 0.98298 0.87995 1.22202 0.99876 0.96433 0.99980 1.21404 0.96801 0.97130 0.97785 1.21404 0.95080 0.94204 0.97228 1.22324 0.96078 0.95632 0.99762 1.22551 0.99648 0.97024 0.97261 1.22338 0.97400 0.98579 0.97596 1.22189 0.96046 0.96768 1.00249 1.20958 0.97134 0.86536 0.92001 0.93791 0.89724 0.96816 0.93648 0.92433 0.93103 0.93881 0.91713 0.91486 0.92292 0.92511 0.92700 0.92080 0.92471 0.92111 0.96920 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.69 11.20 55.49 0.62 -26.07 16 2 C 0.00 0.00 4.91 -17.43 -0.09 -0.09 16 3 Si 0.90 22.01 29.59 -169.99 -5.03 16.98 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.25 -6.84 9.59 -15.06 -0.14 -6.98 16 8 H 0.06 1.72 7.89 -52.48 -0.41 1.31 16 9 N -0.59 -15.02 2.78 -172.77 -0.48 -15.50 16 10 C 0.17 4.19 5.28 -3.95 -0.02 4.17 16 11 C -0.15 -2.90 5.84 -26.83 -0.16 -3.05 16 12 C -0.09 -1.66 4.45 -26.84 -0.12 -1.78 16 13 C -0.08 -1.38 0.63 -153.96 -0.10 -1.47 16 14 C -0.10 -1.75 5.49 -25.19 -0.14 -1.89 16 15 C -0.13 -1.79 6.91 -24.69 -0.17 -1.96 16 16 C -0.12 -1.61 6.84 -25.02 -0.17 -1.78 16 17 C -0.11 -1.70 6.11 -25.73 -0.16 -1.86 16 18 C 0.16 3.47 4.85 -3.86 -0.02 3.45 16 19 H 0.25 7.19 8.31 -40.82 -0.34 6.86 16 20 H 0.08 2.32 6.03 -51.93 -0.31 2.00 16 21 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 22 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 23 H 0.06 1.16 6.10 -51.93 -0.32 0.84 16 24 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 1.22 7.74 -51.93 -0.40 0.82 16 27 H 0.07 1.23 5.76 -51.93 -0.30 0.94 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 33 H 0.06 0.89 7.67 -51.93 -0.40 0.50 16 34 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 1.10 7.79 -51.93 -0.40 0.69 16 LS Contribution 264.03 15.07 3.98 3.98 Total: -1.00 -28.95 264.03 -8.08 -37.03 By element: Atomic # 1 Polarization: 2.72 SS G_CDS: -5.89 Total: -3.16 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -1.28 Total: -13.25 kcal Atomic # 7 Polarization: -41.71 SS G_CDS: 0.14 Total: -41.57 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.03 Total: 16.98 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.95 -8.08 -37.03 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307017119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.323 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds