Wall clock time and date at job start Sun Mar 29 2020 22:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48501 * 109.47245 * 274.35542 * 3 2 1 5 5 H 1.48503 * 109.47218 * 34.35640 * 3 2 1 6 6 H 1.48504 * 109.46956 * 154.35458 * 3 2 1 7 7 C 1.38805 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00376 * 162.69408 * 7 2 1 9 9 N 1.36938 * 119.99836 * 342.69176 * 7 2 1 10 10 C 1.46927 * 120.66021 * 332.08104 * 9 7 2 11 11 C 1.52720 * 109.11126 * 233.88142 * 10 9 7 12 12 C 1.53097 * 109.37057 * 305.25940 * 11 10 9 13 13 C 1.52683 * 109.58696 * 60.62065 * 12 11 10 14 14 C 1.53973 * 109.82204 * 60.69241 * 13 12 11 15 15 C 1.54950 * 104.11750 * 95.92154 * 14 13 12 16 16 C 1.54911 * 102.78801 * 37.69781 * 15 14 13 17 17 C 1.53568 * 110.04476 * 178.11954 * 13 12 11 18 18 C 1.47002 * 120.66292 * 152.36679 * 9 7 2 19 19 H 0.96999 * 120.00305 * 359.97438 * 1 2 3 20 20 H 1.08997 * 109.57520 * 353.74753 * 10 9 7 21 21 H 1.09001 * 109.57176 * 114.12444 * 10 9 7 22 22 H 1.08992 * 109.57325 * 185.21855 * 11 10 9 23 23 H 1.08995 * 109.37697 * 65.17459 * 11 10 9 24 24 H 1.09003 * 109.45077 * 300.58362 * 12 11 10 25 25 H 1.09000 * 109.43234 * 180.64928 * 12 11 10 26 26 H 1.08997 * 110.49554 * 214.58474 * 14 13 12 27 27 H 1.09001 * 110.50024 * 337.26145 * 14 13 12 28 28 H 1.08995 * 110.75356 * 279.36996 * 15 14 13 29 29 H 1.09005 * 110.74970 * 156.02192 * 15 14 13 30 30 H 1.09002 * 110.48364 * 203.55347 * 16 15 14 31 31 H 1.09002 * 110.60061 * 80.96828 * 16 15 14 32 32 H 1.08997 * 110.05882 * 359.97438 * 17 13 12 33 33 H 1.08997 * 110.05311 * 121.41887 * 17 13 12 34 34 H 1.09000 * 109.58125 * 246.79986 * 18 9 7 35 35 H 1.09004 * 109.58044 * 7.06771 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4056 2.0997 -1.3960 5 1 1.4966 2.6244 0.7901 6 1 3.5907 1.4154 0.6060 7 6 2.0102 -1.2021 -0.0005 8 1 3.0536 -1.2232 -0.2788 9 7 1.3721 -2.3613 0.3518 10 6 0.2301 -2.3368 1.2759 11 6 0.4999 -3.3002 2.4298 12 6 0.8155 -4.6891 1.8684 13 6 2.0581 -4.6137 0.9844 14 6 3.2617 -4.1327 1.8155 15 6 3.9773 -5.4410 2.2365 16 6 3.8260 -6.3342 0.9799 17 6 2.4118 -6.0104 0.4531 18 6 1.8198 -3.6557 -0.1822 19 1 -0.4850 0.8400 0.0004 20 1 0.0988 -1.3281 1.6675 21 1 -0.6726 -2.6464 0.7492 22 1 -0.3799 -3.3580 3.0705 23 1 1.3496 -2.9406 3.0100 24 1 -0.0295 -5.0424 1.2774 25 1 0.9969 -5.3803 2.6915 26 1 3.9225 -3.5145 1.2079 27 1 2.9238 -3.5827 2.6939 28 1 3.4806 -5.8940 3.0944 29 1 5.0292 -5.2535 2.4526 30 1 3.9007 -7.3877 1.2495 31 1 4.5787 -6.0779 0.2343 32 1 1.6972 -6.7442 0.8259 33 1 2.4097 -6.0073 -0.6368 34 1 1.0528 -4.0645 -0.8400 35 1 2.7457 -3.5197 -0.7411 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307017119.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:29 Heat of formation + Delta-G solvation = -17.313847 kcal Electronic energy + Delta-G solvation = -14781.628667 eV Core-core repulsion = 12585.302346 eV Total energy + Delta-G solvation = -2196.326321 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65881 -37.04698 -34.30963 -32.33743 -30.95585 -29.43454 -27.22063 -25.28169 -23.86421 -22.34698 -21.08127 -19.05756 -18.55971 -16.86496 -16.36975 -16.23535 -15.63127 -15.02179 -14.47615 -14.31843 -14.22551 -13.80410 -13.51680 -12.99463 -12.83459 -12.43907 -12.29076 -12.06404 -11.99409 -11.86589 -11.79356 -11.44329 -11.30328 -11.21145 -10.97407 -10.86372 -10.49421 -8.63459 -7.86087 -5.30615 1.44199 1.45617 1.55979 2.50802 3.27313 3.63220 3.84793 3.89291 3.94905 4.35596 4.41757 4.43401 4.61057 4.66570 4.74734 4.85385 4.88257 4.93067 5.04623 5.07954 5.12331 5.14593 5.20195 5.26824 5.35700 5.47518 5.52260 5.59721 5.62896 5.66164 5.69666 5.83723 6.39880 7.15949 7.88472 8.41015 9.19858 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.043240 B = 0.010137 C = 0.009281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.394378 B = 2761.567470 C = 3016.248116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.054 4.054 3 Si 0.965 3.035 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.270 1.270 7 C -0.256 4.256 8 H 0.062 0.938 9 N -0.606 5.606 10 C 0.176 3.824 11 C -0.136 4.136 12 C -0.089 4.089 13 C -0.074 4.074 14 C -0.102 4.102 15 C -0.118 4.118 16 C -0.116 4.116 17 C -0.111 4.111 18 C 0.158 3.842 19 H 0.249 0.751 20 H 0.050 0.950 21 H -0.011 1.011 22 H 0.065 0.935 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.075 0.925 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.061 0.939 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.002 0.998 35 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.520 -11.758 4.751 13.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.249 4.249 3 Si 0.793 3.207 4 H -0.213 1.213 5 H -0.218 1.218 6 H -0.195 1.195 7 C -0.386 4.386 8 H 0.080 0.920 9 N -0.329 5.329 10 C 0.051 3.949 11 C -0.174 4.174 12 C -0.126 4.126 13 C -0.076 4.076 14 C -0.139 4.139 15 C -0.155 4.155 16 C -0.153 4.153 17 C -0.149 4.149 18 C 0.032 3.968 19 H 0.058 0.942 20 H 0.068 0.932 21 H 0.007 0.993 22 H 0.083 0.917 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.093 0.907 26 H 0.059 0.941 27 H 0.071 0.929 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.100 0.900 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.020 0.980 35 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.423 -11.621 4.731 13.669 hybrid contribution -0.074 1.417 -0.378 1.469 sum 5.349 -10.204 4.353 12.316 Atomic orbital electron populations 1.70202 1.06667 1.25691 1.55715 1.25773 0.96026 1.01432 1.01628 0.85302 0.78221 0.79791 0.77400 1.21294 1.21769 1.19499 1.19453 0.92706 0.86174 1.40287 0.92049 1.44251 1.35905 1.02025 1.50697 1.20473 0.87610 0.97699 0.89152 1.22043 1.00659 0.96607 0.98136 1.21389 0.96589 0.96035 0.98635 1.21338 0.95562 0.95003 0.95654 1.22259 0.95820 0.97169 0.98668 1.22509 1.00071 0.94894 0.98072 1.22328 0.96018 0.99965 0.97038 1.22160 0.97736 0.94823 1.00201 1.21113 0.96152 0.85876 0.93644 0.94207 0.93165 0.99282 0.91688 0.92671 0.93203 0.90680 0.94124 0.92864 0.90842 0.91301 0.90014 0.92065 0.90733 0.92343 0.97974 0.93788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.12 11.20 21.65 0.24 -56.88 16 2 C -0.05 -3.09 4.91 84.86 0.42 -2.68 16 3 Si 0.96 46.11 29.59 68.60 2.03 48.14 16 4 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 5 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.26 -14.57 9.59 84.03 0.81 -13.76 16 8 H 0.06 3.44 7.89 -2.91 -0.02 3.41 16 9 N -0.61 -31.64 2.78 -700.52 -1.95 -33.59 16 10 C 0.18 8.91 5.28 86.20 0.45 9.36 16 11 C -0.14 -5.28 5.84 30.53 0.18 -5.10 16 12 C -0.09 -2.95 4.45 30.52 0.14 -2.82 16 13 C -0.07 -2.52 0.63 -51.83 -0.03 -2.55 16 14 C -0.10 -3.37 5.49 31.59 0.17 -3.20 16 15 C -0.12 -2.88 6.91 31.91 0.22 -2.66 16 16 C -0.12 -2.62 6.84 31.71 0.22 -2.40 16 17 C -0.11 -2.96 6.11 31.24 0.19 -2.77 16 18 C 0.16 6.88 4.85 86.23 0.42 7.30 16 19 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 20 H 0.05 2.86 6.03 -2.39 -0.01 2.85 16 21 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 22 H 0.06 2.25 8.14 -2.39 -0.02 2.24 16 23 H 0.05 2.18 6.10 -2.39 -0.01 2.17 16 24 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 26 H 0.04 1.52 7.74 -2.39 -0.02 1.50 16 27 H 0.05 1.89 5.76 -2.39 -0.01 1.88 16 28 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 29 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 32 H 0.07 1.76 7.67 -2.39 -0.02 1.74 16 33 H 0.06 1.59 7.67 -2.39 -0.02 1.57 16 34 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 35 H 0.04 1.93 7.79 -2.38 -0.02 1.91 16 Total: -1.00 -63.48 264.03 4.54 -58.95 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: 1.04 Total: 4.66 kcal Atomic # 6 Polarization: -24.46 SS G_CDS: 3.18 Total: -21.28 kcal Atomic # 7 Polarization: -88.76 SS G_CDS: -1.71 Total: -90.47 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.14 kcal Total: -63.48 4.54 -58.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307017119.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.634 kcal (2) G-P(sol) polarization free energy of solvation -63.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds