Wall clock time and date at job start Sun Mar 29 2020 21:37:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46504 * 109.63752 * 2 1 4 4 C 1.34777 * 119.99854 * 300.41682 * 3 2 1 5 5 O 1.21693 * 120.00018 * 0.02562 * 4 3 2 6 6 C 1.46377 * 120.00307 * 180.27510 * 4 3 2 7 7 H 1.08001 * 119.99387 * 359.73219 * 6 4 3 8 8 C 1.40043 * 120.00458 * 179.72666 * 6 4 3 9 9 N 1.30674 * 120.00000 * 0.02562 * 8 6 4 10 10 Si 1.86796 * 120.00093 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47330 * 90.00058 * 10 8 6 12 12 H 1.48502 * 109.47465 * 209.99918 * 10 8 6 13 13 H 1.48496 * 109.47402 * 330.00061 * 10 8 6 14 14 C 1.53017 * 109.81748 * 239.47126 * 2 1 3 15 15 C 1.50069 * 110.14899 * 190.77380 * 14 2 1 16 16 C 1.29442 * 124.07515 * 17.12973 * 15 14 2 17 17 C 1.50073 * 124.07195 * 359.53029 * 16 15 14 18 18 C 1.53021 * 110.14849 * 17.13281 * 17 16 15 19 19 H 1.08991 * 109.47154 * 60.00228 * 1 2 3 20 20 H 1.08998 * 109.46875 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47117 * 299.99995 * 1 2 3 22 22 H 0.97000 * 120.00410 * 120.42408 * 3 2 1 23 23 H 0.97004 * 120.00230 * 180.02562 * 9 8 6 24 24 H 1.08997 * 109.35951 * 310.98110 * 14 2 1 25 25 H 1.09000 * 109.36150 * 70.56449 * 14 2 1 26 26 H 1.08002 * 117.96362 * 197.10529 * 15 14 2 27 27 H 1.08001 * 117.96593 * 179.55302 * 16 15 14 28 28 H 1.08997 * 109.35593 * 256.91843 * 17 16 15 29 29 H 1.09007 * 109.24015 * 137.26860 * 17 16 15 30 30 H 1.09008 * 109.63903 * 190.87674 * 18 17 16 31 31 H 1.09000 * 109.81617 * 70.35530 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0224 1.3798 0.0000 4 6 1.6923 2.2131 -1.0066 5 8 0.9848 1.8194 -1.9152 6 6 2.1891 3.5900 -1.0098 7 1 2.8166 3.9394 -0.2032 8 6 1.8508 4.4541 -2.0586 9 7 1.0911 4.0314 -3.0342 10 14 2.4854 6.2110 -2.0629 11 1 3.7900 6.2643 -2.7703 12 1 1.5093 7.0882 -2.7579 13 1 2.6614 6.6772 -0.6641 14 6 2.0488 -0.7312 -1.2400 15 6 3.5261 -0.9668 -1.1209 16 6 4.1846 -0.8954 -0.0088 17 6 3.5644 -0.5573 1.3153 18 6 2.0457 -0.7314 1.2458 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 2.5860 1.6937 0.7243 23 1 0.8571 4.6299 -3.7609 24 1 1.5368 -1.6888 -1.3354 25 1 1.8494 -0.1275 -2.1254 26 1 4.0739 -1.2114 -2.0190 27 1 5.2464 -1.0911 -0.0355 28 1 3.7984 0.4762 1.5704 29 1 3.9693 -1.2190 2.0811 30 1 1.5868 -0.3044 2.1376 31 1 1.7979 -1.7907 1.1777 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307076826.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:56 Heat of formation + Delta-G solvation = -56.627176 kcal Electronic energy + Delta-G solvation = -14268.216391 eV Core-core repulsion = 11934.352222 eV Total energy + Delta-G solvation = -2333.864169 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.79657 -38.04759 -34.80046 -34.09831 -31.94321 -31.58063 -28.10538 -27.42190 -24.02954 -22.75908 -20.90212 -19.21115 -18.37248 -17.41155 -16.81669 -16.08191 -15.47282 -15.07230 -14.71851 -14.53020 -14.38138 -13.58603 -13.32260 -13.20302 -13.04944 -12.86385 -12.64259 -12.53814 -12.50469 -12.18514 -11.95391 -11.19228 -11.09850 -10.87585 -9.81833 -9.50039 -9.24699 -8.21026 -6.77507 1.39335 1.40677 1.51300 1.55019 2.26223 2.55861 3.21459 3.69647 3.84705 3.93502 4.15624 4.37501 4.54801 4.55829 4.67274 4.79269 4.88435 4.95118 5.01260 5.10054 5.28979 5.30254 5.36472 5.42354 5.54236 5.87937 5.96595 6.17166 6.32970 6.51364 6.93785 7.71067 8.59920 8.79558 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.043073 B = 0.009804 C = 0.009230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.898421 B = 2855.311887 C = 3032.797273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.178 3.822 3 N -0.741 5.741 4 C 0.547 3.453 5 O -0.615 6.615 6 C -0.579 4.579 7 H 0.079 0.921 8 C 0.032 3.968 9 N -0.821 5.821 10 Si 0.990 3.010 11 H -0.264 1.264 12 H -0.274 1.274 13 H -0.251 1.251 14 C -0.102 4.102 15 C -0.161 4.161 16 C -0.155 4.155 17 C -0.086 4.086 18 C -0.111 4.111 19 H 0.036 0.964 20 H 0.073 0.927 21 H 0.051 0.949 22 H 0.388 0.612 23 H 0.271 0.729 24 H 0.079 0.921 25 H 0.046 0.954 26 H 0.092 0.908 27 H 0.115 0.885 28 H 0.071 0.929 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.959 -6.947 9.023 12.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.092 3.908 3 N -0.396 5.396 4 C 0.350 3.650 5 O -0.501 6.501 6 C -0.616 4.616 7 H 0.097 0.903 8 C -0.183 4.183 9 N -0.451 5.451 10 Si 0.810 3.190 11 H -0.189 1.189 12 H -0.199 1.199 13 H -0.174 1.174 14 C -0.140 4.140 15 C -0.179 4.179 16 C -0.173 4.173 17 C -0.123 4.123 18 C -0.149 4.149 19 H 0.055 0.945 20 H 0.092 0.908 21 H 0.070 0.930 22 H 0.222 0.778 23 H 0.081 0.919 24 H 0.097 0.903 25 H 0.065 0.935 26 H 0.110 0.890 27 H 0.133 0.867 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 4.354 -7.229 8.221 11.781 hybrid contribution 0.290 0.970 -0.388 1.084 sum 4.644 -6.259 7.833 11.050 Atomic orbital electron populations 1.22109 0.96149 1.01542 1.01328 1.20143 0.92755 0.82677 0.95257 1.45884 1.56111 1.10806 1.26755 1.18348 0.79842 0.86201 0.80649 1.90498 1.42741 1.78160 1.38749 1.21451 1.34207 0.96282 1.09631 0.90277 1.26840 0.93083 1.04793 0.93584 1.70185 1.28871 1.37556 1.08511 0.85131 0.78392 0.75702 0.79744 1.18911 1.19923 1.17416 1.20802 0.94130 0.99491 0.99543 1.21997 0.95883 1.01841 0.98205 1.22160 0.99748 1.00604 0.94788 1.20451 0.94351 1.02106 0.95373 1.21850 0.96070 1.00957 0.96004 0.94527 0.90781 0.93022 0.77803 0.91907 0.90290 0.93528 0.89013 0.86700 0.91060 0.88242 0.90156 0.89426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.96 8.42 71.98 0.61 -5.36 16 2 C 0.18 6.73 0.67 3.74 0.00 6.73 16 3 N -0.74 -33.02 4.59 -426.52 -1.96 -34.98 16 4 C 0.55 31.38 7.13 86.36 0.62 32.00 16 5 O -0.61 -39.96 11.27 -4.33 -0.05 -40.01 16 6 C -0.58 -33.24 9.54 24.83 0.24 -33.00 16 7 H 0.08 4.13 7.85 -2.91 -0.02 4.11 16 8 C 0.03 1.79 5.50 85.30 0.47 2.26 16 9 N -0.82 -50.80 11.83 21.83 0.26 -50.54 16 10 Si 0.99 41.91 29.56 68.60 2.03 43.94 16 11 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 12 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 13 H -0.25 -9.90 7.11 99.48 0.71 -9.19 16 14 C -0.10 -4.04 4.83 29.66 0.14 -3.90 16 15 C -0.16 -5.58 9.68 27.04 0.26 -5.32 16 16 C -0.16 -4.45 9.74 27.04 0.26 -4.19 16 17 C -0.09 -2.10 5.67 29.66 0.17 -1.94 16 18 C -0.11 -2.97 5.01 30.73 0.15 -2.81 16 19 H 0.04 1.79 6.15 -2.39 -0.01 1.77 16 20 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 21 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 22 H 0.39 15.33 6.92 -92.71 -0.64 14.69 16 23 H 0.27 15.29 8.29 -92.71 -0.77 14.52 16 24 H 0.08 2.75 8.11 -2.39 -0.02 2.73 16 25 H 0.05 2.38 6.04 -2.39 -0.01 2.36 16 26 H 0.09 3.09 8.06 -2.91 -0.02 3.07 16 27 H 0.12 2.80 8.06 -2.91 -0.02 2.78 16 28 H 0.07 1.81 6.78 -2.39 -0.02 1.79 16 29 H 0.10 1.80 8.14 -2.38 -0.02 1.78 16 30 H 0.08 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.09 2.03 8.13 -2.39 -0.02 2.01 16 Total: -1.00 -72.80 251.68 3.68 -69.12 By element: Atomic # 1 Polarization: 27.51 SS G_CDS: 0.48 Total: 27.99 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: 2.92 Total: -15.52 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.70 Total: -85.52 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -0.05 Total: -40.01 kcal Atomic # 14 Polarization: 41.91 SS G_CDS: 2.03 Total: 43.94 kcal Total: -72.80 3.68 -69.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307076826.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.491 kcal (2) G-P(sol) polarization free energy of solvation -72.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds