Wall clock time and date at job start Sun Mar 29 2020 21:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47370 * 305.01845 * 6 5 4 8 8 O 1.21294 * 119.99492 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.37099 * 120.00115 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99780 * 0.02562 * 10 9 7 12 12 C 1.38946 * 119.99798 * 180.02562 * 10 9 7 13 13 N 1.31407 * 120.00342 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99670 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47427 * 89.99959 * 14 12 10 16 16 H 1.48506 * 109.47286 * 209.99893 * 14 12 10 17 17 H 1.48503 * 109.47359 * 329.99947 * 14 12 10 18 18 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 19 19 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 22 22 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 23 23 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 24 24 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 25 25 H 0.96995 * 119.99861 * 0.02562 * 9 7 6 26 26 H 0.97006 * 119.99946 * 179.97438 * 13 12 10 27 27 H 1.08003 * 126.13278 * 180.23755 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6592 -1.1551 -1.1614 8 8 5.3278 -0.2659 -1.9168 9 7 6.8181 -1.8132 -1.3624 10 6 7.6226 -1.4772 -2.4205 11 1 7.3279 -0.6849 -3.0926 12 6 8.8170 -2.1561 -2.6280 13 7 9.1758 -3.1197 -1.8098 14 14 9.9135 -1.6978 -4.0692 15 1 10.8727 -0.6458 -3.6467 16 1 10.6625 -2.8973 -4.5225 17 1 9.0771 -1.1859 -5.1844 18 6 2.3032 -1.0942 0.0051 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 0.8903 0.5134 21 1 -0.3633 -0.8898 0.5143 22 1 1.9951 2.1578 -0.0008 23 1 5.3220 -1.3842 0.9333 24 1 4.4729 -2.5683 -0.0891 25 1 7.0825 -2.5250 -0.7589 26 1 10.0096 -3.5939 -1.9550 27 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307082238.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:32 Heat of formation + Delta-G solvation = 39.169570 kcal Electronic energy + Delta-G solvation = -13081.557374 eV Core-core repulsion = 10648.306920 eV Total energy + Delta-G solvation = -2433.250454 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.80289 -38.11166 -34.11897 -33.07299 -31.42582 -31.12309 -28.19556 -25.65800 -24.34452 -21.10909 -20.04296 -19.17616 -17.99226 -16.43670 -16.06230 -14.84136 -14.58858 -14.07474 -13.88095 -13.58357 -13.08635 -12.77240 -12.69027 -12.20992 -11.79505 -11.62297 -11.56425 -11.08845 -10.43442 -10.28843 -10.07527 -9.58394 -9.19379 -8.45926 -8.05529 -7.91653 -6.48900 -3.90060 2.30659 2.89869 3.13858 3.18699 3.23617 3.30013 3.74866 4.11888 4.68389 5.03495 5.08336 5.22047 5.40624 5.48912 5.61615 5.68594 5.83717 6.07822 6.09374 6.22668 6.41341 7.04246 7.37197 7.49155 7.95857 8.16243 8.51014 9.09670 9.41569 9.92601 10.68433 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.079988 B = 0.006350 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.969812 B = 4408.130726 C = 4571.387835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.252 4.252 3 C 0.029 3.971 4 N -0.255 5.255 5 N -0.345 5.345 6 C 0.119 3.881 7 C 0.426 3.574 8 O -0.566 6.566 9 N -0.558 5.558 10 C -0.300 4.300 11 H 0.104 0.896 12 C 0.024 3.976 13 N -0.900 5.900 14 Si 0.932 3.068 15 H -0.277 1.277 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.047 3.953 19 H 0.056 0.944 20 H 0.058 0.942 21 H 0.055 0.945 22 H 0.176 0.824 23 H 0.100 0.900 24 H 0.110 0.890 25 H 0.393 0.607 26 H 0.273 0.727 27 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.156 -0.001 5.370 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.264 4.264 3 C -0.158 4.158 4 N -0.076 5.076 5 N -0.126 5.126 6 C -0.006 4.006 7 C 0.210 3.790 8 O -0.449 6.449 9 N -0.195 5.195 10 C -0.429 4.429 11 H 0.121 0.879 12 C -0.178 4.178 13 N -0.541 5.541 14 Si 0.759 3.241 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.099 4.099 19 H 0.075 0.925 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.193 0.807 23 H 0.118 0.882 24 H 0.128 0.872 25 H 0.227 0.773 26 H 0.083 0.917 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -9.830 0.737 4.845 10.984 hybrid contribution 0.015 -0.648 -0.355 0.738 sum -9.815 0.090 4.491 10.794 Atomic orbital electron populations 1.19975 0.89800 1.01502 1.01111 1.20028 0.96668 0.92069 1.17651 1.23735 0.90319 0.99468 1.02241 1.77518 1.20503 0.88734 1.20815 1.48020 1.04606 1.04707 1.55265 1.21481 0.85271 0.92999 1.00868 1.19748 0.84199 0.86829 0.88222 1.90611 1.73607 1.32710 1.47963 1.41783 1.17419 1.32989 1.27305 1.19707 1.00001 1.18148 1.05064 0.87854 1.25273 0.97719 0.95850 0.98922 1.69604 1.24295 1.22635 1.37555 0.85828 0.79632 0.77882 0.80796 1.20276 1.20826 1.19372 1.22240 0.84221 0.99798 1.03626 0.92533 0.92292 0.92602 0.80701 0.88224 0.87241 0.77340 0.91727 0.81475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.70 10.37 36.01 0.37 -0.33 15 2 C -0.25 -3.75 6.10 -105.05 -0.64 -4.39 15 3 C 0.03 0.49 11.96 -17.36 -0.21 0.28 15 4 N -0.26 -5.28 11.64 30.62 0.36 -4.93 15 5 N -0.34 -6.46 3.40 -62.54 -0.21 -6.67 15 6 C 0.12 2.12 6.99 -5.19 -0.04 2.09 15 7 C 0.43 10.24 7.81 -10.99 -0.09 10.15 15 8 O -0.57 -16.17 15.28 5.54 0.08 -16.09 15 9 N -0.56 -14.01 5.29 -10.96 -0.06 -14.07 15 10 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 15 11 H 0.10 3.06 7.16 -52.49 -0.38 2.69 15 12 C 0.02 0.65 5.50 -17.47 -0.10 0.55 15 13 N -0.90 -24.15 13.05 55.50 0.72 -23.42 15 14 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 15 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 17 H -0.27 -6.10 7.11 56.52 0.40 -5.70 15 18 C 0.05 0.73 11.36 -17.23 -0.20 0.53 15 19 H 0.06 0.58 8.14 -51.93 -0.42 0.16 15 20 H 0.06 0.55 8.14 -51.93 -0.42 0.13 15 21 H 0.05 0.51 8.14 -51.93 -0.42 0.09 15 22 H 0.18 2.33 8.06 -52.49 -0.42 1.91 15 23 H 0.10 1.57 8.14 -51.93 -0.42 1.14 15 24 H 0.11 1.51 8.07 -51.93 -0.42 1.09 15 25 H 0.39 9.19 7.90 -40.82 -0.32 8.87 15 26 H 0.27 6.92 8.31 -40.82 -0.34 6.58 15 27 H 0.17 1.89 8.06 -52.48 -0.42 1.47 15 LS Contribution 249.42 15.07 3.76 3.76 Total: -1.00 -34.03 249.42 -4.19 -38.22 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.79 Total: 6.81 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.03 Total: 0.37 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.81 Total: -49.09 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.08 Total: -16.09 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -34.03 -4.19 -38.22 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307082238.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.388 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds