Wall clock time and date at job start Sun Mar 29 2020 21:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39874 * 126.03736 * 2 1 4 4 N 1.30837 * 108.19824 * 179.97438 * 3 2 1 5 5 N 1.40084 * 108.20590 * 0.02562 * 4 3 2 6 6 C 1.46502 * 126.03309 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47370 * 305.01845 * 6 5 4 8 8 O 1.21294 * 119.99492 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00362 * 180.02562 * 7 6 5 10 10 C 1.37099 * 120.00115 * 179.97438 * 9 7 6 11 11 H 1.07998 * 119.99780 * 0.02562 * 10 9 7 12 12 C 1.38946 * 119.99798 * 180.02562 * 10 9 7 13 13 N 1.31407 * 120.00342 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99670 * 180.02562 * 12 10 9 15 15 H 1.48499 * 109.47427 * 89.99959 * 14 12 10 16 16 H 1.48506 * 109.47286 * 209.99893 * 14 12 10 17 17 H 1.48503 * 109.47359 * 329.99947 * 14 12 10 18 18 C 1.34938 * 107.92933 * 359.75357 * 5 4 3 19 19 H 1.09002 * 109.47152 * 90.02757 * 1 2 3 20 20 H 1.09001 * 109.46980 * 330.02858 * 1 2 3 21 21 H 1.09004 * 109.47113 * 210.02839 * 1 2 3 22 22 H 1.07991 * 125.90010 * 359.94828 * 3 2 1 23 23 H 1.09000 * 109.47673 * 65.01768 * 6 5 4 24 24 H 1.09004 * 109.46824 * 185.02002 * 6 5 4 25 25 H 0.96995 * 119.99861 * 0.02562 * 9 7 6 26 26 H 0.97006 * 119.99946 * 179.97438 * 13 12 10 27 27 H 1.08003 * 126.13278 * 180.23755 * 18 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1311 0.0000 4 7 3.5754 0.7303 0.0006 5 7 3.5844 -0.6706 0.0003 6 6 4.7746 -1.5248 0.0013 7 6 5.6592 -1.1551 -1.1614 8 8 5.3278 -0.2659 -1.9168 9 7 6.8181 -1.8132 -1.3624 10 6 7.6226 -1.4772 -2.4205 11 1 7.3279 -0.6849 -3.0926 12 6 8.8170 -2.1561 -2.6280 13 7 9.1758 -3.1197 -1.8098 14 14 9.9135 -1.6978 -4.0692 15 1 10.8727 -0.6458 -3.6467 16 1 10.6625 -2.8973 -4.5225 17 1 9.0771 -1.1859 -5.1844 18 6 2.3032 -1.0942 0.0051 19 1 -0.3633 -0.0005 -1.0277 20 1 -0.3633 0.8903 0.5134 21 1 -0.3633 -0.8898 0.5143 22 1 1.9951 2.1578 -0.0008 23 1 5.3220 -1.3842 0.9333 24 1 4.4729 -2.5683 -0.0891 25 1 7.0825 -2.5250 -0.7589 26 1 10.0096 -3.5939 -1.9550 27 1 1.9724 -2.1223 0.0099 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307082238.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:32 Heat of formation + Delta-G solvation = 14.225717 kcal Electronic energy + Delta-G solvation = -13082.639021 eV Core-core repulsion = 10648.306920 eV Total energy + Delta-G solvation = -2434.332101 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.06940 -40.01141 -36.10580 -34.45695 -33.33564 -32.39678 -29.58778 -27.15723 -25.93268 -22.57777 -21.30400 -20.84194 -19.96537 -18.00949 -17.58152 -16.64442 -16.23967 -15.78940 -15.39673 -15.06241 -14.32198 -14.11143 -13.86497 -13.60465 -13.44765 -13.10558 -12.85614 -12.61756 -12.48830 -12.15450 -11.58673 -11.31555 -10.76586 -10.16458 -10.08566 -9.14274 -8.52825 -6.02204 1.06280 1.33696 1.39206 1.51244 1.65525 1.92099 1.99248 2.26573 3.01621 3.13721 3.81285 4.02555 4.19497 4.27777 4.29250 4.55682 4.69322 5.01137 5.06666 5.30377 5.35227 5.38522 5.82056 5.91393 6.22261 6.52272 6.89935 7.05212 7.43921 8.00574 8.63874 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.079988 B = 0.006350 C = 0.006124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 349.969812 B = 4408.130726 C = 4571.387835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C -0.256 4.256 3 C 0.024 3.976 4 N -0.324 5.324 5 N -0.365 5.365 6 C 0.130 3.870 7 C 0.422 3.578 8 O -0.618 6.618 9 N -0.563 5.563 10 C -0.337 4.337 11 H 0.074 0.926 12 C -0.007 4.007 13 N -0.914 5.914 14 Si 0.992 3.008 15 H -0.271 1.271 16 H -0.266 1.266 17 H -0.276 1.276 18 C 0.045 3.955 19 H 0.060 0.940 20 H 0.072 0.928 21 H 0.076 0.924 22 H 0.198 0.802 23 H 0.120 0.880 24 H 0.156 0.844 25 H 0.401 0.599 26 H 0.280 0.720 27 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.138 -1.090 5.858 13.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.268 4.268 3 C -0.163 4.163 4 N -0.145 5.145 5 N -0.147 5.147 6 C 0.005 3.995 7 C 0.208 3.792 8 O -0.504 6.504 9 N -0.201 5.201 10 C -0.466 4.466 11 H 0.092 0.908 12 C -0.207 4.207 13 N -0.554 5.554 14 Si 0.815 3.185 15 H -0.197 1.197 16 H -0.190 1.190 17 H -0.201 1.201 18 C -0.099 4.099 19 H 0.079 0.921 20 H 0.090 0.910 21 H 0.095 0.905 22 H 0.215 0.785 23 H 0.138 0.862 24 H 0.173 0.827 25 H 0.236 0.764 26 H 0.090 0.910 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -10.821 -0.377 5.366 12.085 hybrid contribution 0.238 -0.287 -0.479 0.607 sum -10.583 -0.663 4.887 11.676 Atomic orbital electron populations 1.20051 0.86747 1.03261 1.01890 1.20576 0.98702 0.91109 1.16376 1.24318 0.89881 1.01347 1.00704 1.77430 1.22851 0.90485 1.23749 1.48130 1.05717 1.04243 1.56648 1.21502 0.84643 0.95115 0.98284 1.20853 0.84008 0.85305 0.88993 1.90573 1.74750 1.34753 1.50314 1.41805 1.17826 1.33459 1.26982 1.19603 1.01769 1.18833 1.06442 0.90810 1.26002 0.98191 0.95420 1.01132 1.69646 1.24796 1.22671 1.38328 0.84949 0.77762 0.78198 0.77550 1.19679 1.19032 1.20054 1.23032 0.82918 1.01948 1.02050 0.92107 0.90955 0.90524 0.78488 0.86208 0.82666 0.76446 0.91021 0.77398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.11 10.37 71.24 0.74 -0.37 15 2 C -0.26 -7.04 6.10 -20.14 -0.12 -7.16 15 3 C 0.02 0.78 11.96 85.24 1.02 1.80 15 4 N -0.32 -13.52 11.64 -57.03 -0.66 -14.18 15 5 N -0.37 -13.28 3.40 -351.79 -1.20 -14.47 15 6 C 0.13 4.42 6.99 85.63 0.60 5.02 15 7 C 0.42 20.53 7.81 87.66 0.68 21.22 15 8 O -0.62 -36.50 15.28 -3.07 -0.05 -36.54 15 9 N -0.56 -28.67 5.29 -306.99 -1.62 -30.29 15 10 C -0.34 -19.30 9.68 84.04 0.81 -18.48 15 11 H 0.07 4.59 7.16 -2.91 -0.02 4.57 15 12 C -0.01 -0.36 5.50 84.93 0.47 0.11 15 13 N -0.91 -48.42 13.05 21.66 0.28 -48.14 15 14 Si 0.99 43.00 29.55 68.60 2.03 45.03 15 15 H -0.27 -11.49 7.11 99.48 0.71 -10.78 15 16 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 17 H -0.28 -12.15 7.11 99.48 0.71 -11.44 15 18 C 0.05 1.27 11.36 83.54 0.95 2.22 15 19 H 0.06 1.07 8.14 -2.39 -0.02 1.05 15 20 H 0.07 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.08 1.08 8.14 -2.38 -0.02 1.06 15 22 H 0.20 5.12 8.06 -2.92 -0.02 5.09 15 23 H 0.12 3.58 8.14 -2.39 -0.02 3.56 15 24 H 0.16 3.79 8.07 -2.38 -0.02 3.77 15 25 H 0.40 18.73 7.90 -92.71 -0.73 18.00 15 26 H 0.28 13.84 8.31 -92.70 -0.77 13.07 15 27 H 0.21 3.82 8.06 -2.91 -0.02 3.79 15 Total: -1.00 -75.84 249.42 4.38 -71.46 By element: Atomic # 1 Polarization: 22.34 SS G_CDS: 0.45 Total: 22.80 kcal Atomic # 6 Polarization: -0.80 SS G_CDS: 5.15 Total: 4.35 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -3.20 Total: -107.09 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.05 Total: -36.54 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -75.84 4.38 -71.46 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307082238.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.682 kcal (2) G-P(sol) polarization free energy of solvation -75.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds