Wall clock time and date at job start Sun Mar 29 2020 21:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.29454 * 117.69655 * 2 1 4 4 C 1.50697 * 118.17323 * 0.86002 * 3 2 1 5 5 C 1.50326 * 123.65208 * 180.57375 * 3 2 1 6 6 N 1.47004 * 109.16460 * 349.28361 * 5 3 2 7 7 C 1.34781 * 121.37277 * 222.96195 * 6 5 3 8 8 O 1.21684 * 119.99957 * 179.97438 * 7 6 5 9 9 C 1.46376 * 120.00192 * 0.02562 * 7 6 5 10 10 H 1.07998 * 119.99737 * 359.97438 * 9 7 6 11 11 C 1.40048 * 120.00078 * 179.97438 * 9 7 6 12 12 N 1.30667 * 119.99825 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99713 * 179.97438 * 11 9 7 14 14 H 1.48501 * 109.47490 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47039 * 120.00393 * 13 11 9 16 16 H 1.48498 * 109.47127 * 239.99813 * 13 11 9 17 17 C 1.47341 * 117.25303 * 42.94926 * 6 5 3 18 18 C 1.49972 * 117.69268 * 180.21811 * 2 1 3 19 19 H 1.09000 * 109.47237 * 5.24647 * 1 2 3 20 20 H 1.09003 * 109.47317 * 125.24801 * 1 2 3 21 21 H 1.09008 * 109.47466 * 245.24881 * 1 2 3 22 22 H 1.09001 * 109.47021 * 174.86591 * 4 3 2 23 23 H 1.09002 * 109.46743 * 294.86212 * 4 3 2 24 24 H 1.08996 * 109.47399 * 54.86077 * 4 3 2 25 25 H 1.09002 * 109.51641 * 109.18975 * 5 3 2 26 26 H 1.08999 * 109.52033 * 229.37694 * 5 3 2 27 27 H 0.97000 * 119.99965 * 180.02562 * 12 11 9 28 28 H 1.09001 * 109.77925 * 57.80226 * 17 6 5 29 29 H 1.08992 * 109.77952 * 178.61659 * 17 6 5 30 30 H 1.09005 * 109.43175 * 40.82357 * 18 2 1 31 31 H 1.08996 * 108.97634 * 281.33920 * 18 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1086 1.1462 0.0000 4 6 1.2632 2.3936 0.0199 5 6 3.6037 1.3022 -0.0125 6 7 4.2275 -0.0059 0.2341 7 6 5.2794 -0.1358 1.0666 8 8 5.7762 -1.2309 1.2529 9 6 5.8236 1.0401 1.7475 10 1 5.3824 2.0119 1.5825 11 6 6.9163 0.9049 2.6130 12 7 7.4504 -0.2708 2.8122 13 14 7.6111 2.4058 3.4813 14 1 6.8350 3.6091 3.0877 15 1 7.5177 2.2148 4.9510 16 1 9.0336 2.5868 3.0952 17 6 3.6551 -1.1691 -0.4662 18 6 2.2039 -1.3279 -0.0051 19 1 -0.3634 1.0233 -0.0940 20 1 -0.3634 -0.5931 -0.8393 21 1 -0.3634 -0.4303 0.9333 22 1 1.9078 3.2680 0.1094 23 1 0.6894 2.4583 -0.9045 24 1 0.5810 2.3566 0.8692 25 1 3.9222 1.6804 -0.9839 26 1 3.9035 2.0016 0.7679 27 1 8.2070 -0.3645 3.4119 28 1 3.6838 -1.0022 -1.5430 29 1 4.2219 -2.0658 -0.2160 30 1 1.6836 -2.0080 -0.6797 31 1 2.1891 -1.7398 1.0040 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307104722.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:56 Heat of formation + Delta-G solvation = -49.899032 kcal Electronic energy + Delta-G solvation = -13968.922444 eV Core-core repulsion = 11635.350029 eV Total energy + Delta-G solvation = -2333.572415 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.49835 -38.29535 -35.08138 -34.52867 -33.06477 -29.60324 -28.10610 -27.70289 -24.62950 -23.89560 -21.17152 -18.91661 -17.77357 -17.39352 -16.56275 -16.08858 -15.73457 -15.32524 -14.92605 -14.50344 -14.32248 -13.72267 -13.52276 -13.32497 -13.10457 -12.92644 -12.79590 -12.56217 -12.44306 -12.31899 -12.00408 -11.87198 -11.35831 -10.96456 -9.85960 -9.36681 -9.10762 -8.31190 -6.86934 1.31844 1.38536 1.38909 1.57067 2.22527 2.43636 2.81103 3.56574 3.85692 4.01448 4.19540 4.30228 4.50661 4.58138 4.70574 4.78150 4.82890 4.84186 4.89941 4.97701 5.09867 5.15387 5.22620 5.24764 5.35115 5.66889 5.80534 6.08762 6.22682 6.39127 6.85154 7.40712 8.43776 8.65237 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.040318 B = 0.009695 C = 0.008266 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.312875 B = 2887.531402 C = 3386.447037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.139 4.139 3 C -0.155 4.155 4 C -0.105 4.105 5 C 0.156 3.844 6 N -0.649 5.649 7 C 0.541 3.459 8 O -0.634 6.634 9 C -0.568 4.568 10 H 0.092 0.908 11 C 0.026 3.974 12 N -0.823 5.823 13 Si 0.998 3.002 14 H -0.244 1.244 15 H -0.268 1.268 16 H -0.267 1.267 17 C 0.113 3.887 18 C -0.087 4.087 19 H 0.084 0.916 20 H 0.074 0.926 21 H 0.062 0.938 22 H 0.063 0.937 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.084 0.916 27 H 0.274 0.726 28 H 0.066 0.934 29 H 0.052 0.948 30 H 0.100 0.900 31 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.502 6.666 -5.027 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.139 4.139 3 C -0.155 4.155 4 C -0.162 4.162 5 C 0.033 3.967 6 N -0.385 5.385 7 C 0.347 3.653 8 O -0.522 6.522 9 C -0.604 4.604 10 H 0.110 0.890 11 C -0.188 4.188 12 N -0.453 5.453 13 Si 0.817 3.183 14 H -0.166 1.166 15 H -0.193 1.193 16 H -0.192 1.192 17 C -0.010 4.010 18 C -0.125 4.125 19 H 0.103 0.897 20 H 0.093 0.907 21 H 0.080 0.920 22 H 0.083 0.917 23 H 0.103 0.897 24 H 0.092 0.908 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.118 0.882 31 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -12.115 5.962 -4.858 14.350 hybrid contribution 0.762 -0.035 0.439 0.880 sum -11.353 5.927 -4.418 13.548 Atomic orbital electron populations 1.21074 0.90154 1.04005 1.02232 1.20772 0.97240 0.93676 1.02195 1.21343 0.94787 0.96693 1.02714 1.20842 0.98701 0.93818 1.02820 1.20357 0.89961 0.85575 1.00817 1.48184 1.33912 1.08024 1.48405 1.18667 0.78455 0.89846 0.78290 1.90528 1.63222 1.30385 1.68034 1.21517 1.16485 0.94431 1.27968 0.88965 1.27050 0.95655 1.00279 0.95859 1.70207 1.19014 1.26532 1.29512 0.84973 0.78388 0.77308 0.77660 1.16643 1.19334 1.19227 1.21353 0.93752 0.90144 0.95771 1.20614 0.94444 0.96377 1.01088 0.89686 0.90683 0.91952 0.91747 0.89709 0.90824 0.91766 0.89753 0.91572 0.91537 0.92909 0.88211 0.93374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.60 71.23 0.68 -1.85 16 2 C -0.14 -4.20 5.86 -15.14 -0.09 -4.29 16 3 C -0.15 -4.84 5.92 -15.03 -0.09 -4.93 16 4 C -0.10 -2.33 8.36 71.23 0.60 -1.73 16 5 C 0.16 6.07 6.06 85.42 0.52 6.59 16 6 N -0.65 -31.80 2.97 -828.29 -2.46 -34.26 16 7 C 0.54 33.06 7.66 86.36 0.66 33.73 16 8 O -0.63 -44.46 14.51 -4.30 -0.06 -44.52 16 9 C -0.57 -33.08 8.84 24.83 0.22 -32.86 16 10 H 0.09 4.81 5.85 -2.91 -0.02 4.79 16 11 C 0.03 1.50 5.50 85.31 0.47 1.97 16 12 N -0.82 -51.64 11.83 21.83 0.26 -51.39 16 13 Si 1.00 41.51 29.56 68.60 2.03 43.54 16 14 H -0.24 -9.25 7.11 99.48 0.71 -8.55 16 15 H -0.27 -10.75 7.11 99.48 0.71 -10.05 16 16 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 17 C 0.11 4.78 6.51 86.25 0.56 5.34 16 18 C -0.09 -2.98 5.96 29.65 0.18 -2.80 16 19 H 0.08 1.52 5.21 -2.39 -0.01 1.50 16 20 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 21 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 22 H 0.06 1.37 7.94 -2.39 -0.02 1.35 16 23 H 0.08 1.50 7.66 -2.39 -0.02 1.48 16 24 H 0.07 1.49 7.36 -2.39 -0.02 1.47 16 25 H 0.06 2.30 8.14 -2.39 -0.02 2.29 16 26 H 0.08 3.44 5.66 -2.39 -0.01 3.43 16 27 H 0.27 15.50 8.29 -92.71 -0.77 14.73 16 28 H 0.07 2.47 8.14 -2.39 -0.02 2.46 16 29 H 0.05 2.54 7.07 -2.39 -0.02 2.52 16 30 H 0.10 2.69 8.14 -2.38 -0.02 2.67 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -77.46 254.33 4.59 -72.86 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: 1.12 Total: 14.60 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 3.71 Total: -0.84 kcal Atomic # 7 Polarization: -83.44 SS G_CDS: -2.20 Total: -85.64 kcal Atomic # 8 Polarization: -44.46 SS G_CDS: -0.06 Total: -44.52 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.54 kcal Total: -77.46 4.59 -72.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307104722.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.964 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds