Wall clock time and date at job start Sun Mar 29 2020 21:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35314 * 126.12717 * 2 1 4 4 C 1.50701 * 126.04175 * 359.97438 * 3 2 1 5 5 H 1.09004 * 109.47150 * 325.00101 * 4 3 2 6 6 C 1.52997 * 109.47247 * 84.99815 * 4 3 2 7 7 N 1.46498 * 109.47114 * 204.99782 * 4 3 2 8 8 C 1.36943 * 119.99752 * 154.72127 * 7 4 3 9 9 H 1.08002 * 119.99793 * 0.27665 * 8 7 4 10 10 C 1.38811 * 120.00012 * 180.27737 * 8 7 4 11 11 N 1.31624 * 119.99698 * 0.02562 * 10 8 7 12 12 Si 1.86795 * 120.00072 * 180.02562 * 10 8 7 13 13 H 1.48495 * 109.47159 * 0.02562 * 12 10 8 14 14 H 1.48505 * 109.47290 * 120.00044 * 12 10 8 15 15 H 1.48503 * 109.47163 * 240.00049 * 12 10 8 16 16 C 1.39874 * 107.91975 * 180.23830 * 3 2 1 17 17 N 1.30836 * 108.19850 * 359.55673 * 16 3 2 18 18 N 1.34944 * 126.12576 * 179.97438 * 2 1 3 19 19 C 1.46505 * 126.03820 * 0.04425 * 18 2 1 20 20 H 1.09002 * 109.46660 * 90.00100 * 1 2 3 21 21 H 1.08998 * 109.47085 * 210.00312 * 1 2 3 22 22 H 1.09004 * 109.46616 * 330.00332 * 1 2 3 23 23 H 1.08997 * 109.47293 * 180.02562 * 6 4 3 24 24 H 1.09003 * 109.47189 * 300.00333 * 6 4 3 25 25 H 1.09009 * 109.47238 * 60.00212 * 6 4 3 26 26 H 0.97001 * 120.00384 * 335.00482 * 7 4 3 27 27 H 0.96999 * 119.99739 * 180.02562 * 11 10 8 28 28 H 1.08002 * 125.89558 * 179.73790 * 16 3 2 29 29 H 1.08994 * 109.46892 * 89.99864 * 19 18 2 30 30 H 1.08996 * 109.47075 * 209.99988 * 19 18 2 31 31 H 1.09004 * 109.46762 * 329.99863 * 19 18 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0929 0.0000 4 6 1.8434 2.5276 -0.0005 5 1 0.9309 2.6155 -0.5903 6 6 1.5669 2.9750 1.4362 7 7 2.8857 3.3756 -0.5841 8 6 2.5512 4.5696 -1.1652 9 1 1.5195 4.8881 -1.1894 10 6 3.5381 5.3705 -1.7233 11 7 4.7954 4.9820 -1.6942 12 14 3.0820 6.9995 -2.5153 13 1 1.6144 7.2037 -2.4176 14 1 3.7828 8.1048 -1.8134 15 1 3.4862 6.9856 -3.9442 16 6 3.6335 0.6559 -0.0055 17 7 3.6334 -0.6524 0.0009 18 7 2.3026 -1.0900 0.0005 19 6 1.8539 -2.4846 0.0002 20 1 -0.3633 0.0000 -1.0277 21 1 -0.3633 -0.8899 0.5139 22 1 -0.3633 0.8901 0.5138 23 1 1.2327 4.0124 1.4358 24 1 0.7914 2.3439 1.8704 25 1 2.4794 2.8870 2.0261 26 1 3.8123 3.0895 -0.5625 27 1 5.4851 5.5418 -2.0838 28 1 4.5084 1.2892 -0.0109 29 1 1.7432 -2.8304 -1.0275 30 1 2.5895 -3.1031 0.5145 31 1 0.8950 -2.5578 0.5135 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307110319.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:20 Heat of formation + Delta-G solvation = 60.945868 kcal Electronic energy + Delta-G solvation = -13708.918090 eV Core-core repulsion = 11412.445021 eV Total energy + Delta-G solvation = -2296.473068 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.20373 -37.27570 -34.41178 -34.04947 -32.24243 -29.98635 -27.74525 -27.40595 -25.70341 -23.30215 -21.22171 -20.29977 -18.97984 -17.49743 -16.52546 -16.41209 -15.61025 -15.23475 -15.13579 -14.38448 -14.12848 -13.85307 -13.59101 -13.34523 -13.19622 -13.02798 -12.88185 -12.78185 -12.43319 -12.19118 -11.95868 -11.62995 -11.28201 -10.97911 -10.09431 -9.18121 -8.89827 -7.88063 -5.15611 0.95366 1.50220 1.51310 1.61259 1.75348 1.87739 2.61385 3.46512 3.68317 3.86865 4.06800 4.28670 4.41081 4.45914 4.53191 4.62705 4.68240 4.80523 4.87218 4.96172 5.08989 5.18140 5.30261 5.37867 5.57006 5.61670 5.74785 6.27228 6.34983 6.78751 7.40125 8.18662 8.42061 9.36530 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.049994 B = 0.007789 C = 0.007292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 559.927601 B = 3593.852133 C = 3839.116950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.087 3.913 3 C -0.250 4.250 4 C 0.246 3.754 5 H 0.052 0.948 6 C -0.145 4.145 7 N -0.736 5.736 8 C -0.231 4.231 9 H 0.080 0.920 10 C -0.082 4.082 11 N -0.974 5.974 12 Si 0.972 3.028 13 H -0.263 1.263 14 H -0.296 1.296 15 H -0.297 1.297 16 C 0.045 3.955 17 N -0.334 5.334 18 N -0.378 5.378 19 C 0.092 3.908 20 H 0.089 0.911 21 H 0.100 0.900 22 H 0.090 0.910 23 H 0.042 0.958 24 H 0.070 0.930 25 H 0.031 0.969 26 H 0.371 0.629 27 H 0.249 0.751 28 H 0.164 0.836 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.528 -13.286 4.794 18.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.262 4.262 4 C 0.137 3.863 5 H 0.070 0.930 6 C -0.205 4.205 7 N -0.376 5.376 8 C -0.363 4.363 9 H 0.098 0.902 10 C -0.273 4.273 11 N -0.625 5.625 12 Si 0.802 3.198 13 H -0.187 1.187 14 H -0.223 1.223 15 H -0.225 1.225 16 C -0.139 4.139 17 N -0.156 5.156 18 N -0.161 5.161 19 C -0.047 4.047 20 H 0.107 0.893 21 H 0.119 0.881 22 H 0.109 0.891 23 H 0.061 0.939 24 H 0.089 0.911 25 H 0.051 0.949 26 H 0.204 0.796 27 H 0.057 0.943 28 H 0.181 0.819 29 H 0.102 0.898 30 H 0.109 0.891 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -10.984 -14.383 4.742 18.708 hybrid contribution 0.537 1.704 -0.539 1.866 sum -10.447 -12.678 4.203 16.957 Atomic orbital electron populations 1.20607 0.84110 1.05342 1.04405 1.21286 0.96160 0.86037 1.00732 1.20317 0.92634 0.96423 1.16805 1.18585 0.90903 0.84030 0.92823 0.93012 1.22232 1.00280 1.00410 0.97594 1.42665 1.05870 1.20284 1.68829 1.19721 0.93489 0.95770 1.27362 0.90195 1.25554 0.95414 1.02736 1.03610 1.69843 1.00244 1.39695 1.52742 0.85075 0.77895 0.79639 0.77204 1.18680 1.22309 1.22456 1.23570 0.98604 0.91945 0.99800 1.77209 0.98609 1.12660 1.27172 1.48739 1.03006 1.07393 1.56991 1.22189 1.02383 0.75658 1.04486 0.89289 0.88143 0.89141 0.93878 0.91128 0.94927 0.79625 0.94267 0.81919 0.89818 0.89097 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.62 9.80 71.24 0.70 -0.92 16 2 C 0.09 2.57 6.93 41.41 0.29 2.86 16 3 C -0.25 -9.53 5.21 -20.14 -0.11 -9.63 16 4 C 0.25 10.15 2.89 44.24 0.13 10.28 16 5 H 0.05 2.09 7.95 -2.39 -0.02 2.07 16 6 C -0.15 -5.32 9.48 71.98 0.68 -4.64 16 7 N -0.74 -38.58 5.09 -326.50 -1.66 -40.25 16 8 C -0.23 -13.06 9.93 84.03 0.83 -12.23 16 9 H 0.08 4.27 7.83 -2.91 -0.02 4.24 16 10 C -0.08 -4.78 5.50 84.86 0.47 -4.32 16 11 N -0.97 -61.36 13.06 21.65 0.28 -61.08 16 12 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 13 H -0.26 -11.74 7.11 99.48 0.71 -11.04 16 14 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 15 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 16 C 0.05 1.86 11.19 85.24 0.95 2.82 16 17 N -0.33 -12.67 12.58 -57.02 -0.72 -13.38 16 18 N -0.38 -11.08 4.01 -356.03 -1.43 -12.51 16 19 C 0.09 1.54 11.27 127.77 1.44 2.98 16 20 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 21 H 0.10 1.16 7.08 -2.39 -0.02 1.14 16 22 H 0.09 1.66 7.51 -2.38 -0.02 1.64 16 23 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.07 2.04 7.76 -2.39 -0.02 2.02 16 25 H 0.03 1.25 8.14 -2.38 -0.02 1.24 16 26 H 0.37 21.00 6.21 -92.71 -0.58 20.42 16 27 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 28 H 0.16 7.10 7.11 -2.91 -0.02 7.08 16 29 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.12 1.11 7.05 -2.38 -0.02 1.09 16 Total: -1.00 -72.76 265.35 4.43 -68.33 By element: Atomic # 1 Polarization: 22.16 SS G_CDS: 0.54 Total: 22.70 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 5.39 Total: -12.80 kcal Atomic # 7 Polarization: -123.70 SS G_CDS: -3.52 Total: -127.22 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -72.76 4.43 -68.33 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307110319.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.272 kcal (2) G-P(sol) polarization free energy of solvation -72.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds