Wall clock time and date at job start Sun Mar 29 2020 21:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36884 * 126.58692 * 2 1 4 4 H 0.97003 * 126.39735 * 0.02562 * 3 2 1 5 5 C 1.35041 * 107.20100 * 180.02562 * 3 2 1 6 6 N 1.30504 * 108.70376 * 359.76392 * 5 3 2 7 7 C 1.34133 * 109.25103 * 0.38598 * 6 5 3 8 8 C 1.50699 * 125.98443 * 179.88385 * 7 6 5 9 9 N 1.46499 * 109.46700 * 269.68329 * 8 7 6 10 10 C 1.34784 * 119.99893 * 180.02562 * 9 8 7 11 11 O 1.21682 * 119.99954 * 359.97438 * 10 9 8 12 12 C 1.46368 * 119.99916 * 179.72943 * 10 9 8 13 13 H 1.07998 * 120.00437 * 359.97438 * 12 10 9 14 14 C 1.40055 * 119.99853 * 179.97438 * 12 10 9 15 15 N 1.30662 * 119.99894 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99877 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46909 * 89.99994 * 16 14 12 18 18 H 1.48496 * 109.47072 * 210.00005 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00008 * 16 14 12 20 20 H 1.08996 * 109.46952 * 269.97388 * 1 2 3 21 21 H 1.09000 * 109.47463 * 29.97772 * 1 2 3 22 22 H 1.09005 * 109.46833 * 149.97439 * 1 2 3 23 23 H 1.08001 * 125.64638 * 180.02562 * 5 3 2 24 24 H 1.08998 * 109.46743 * 149.68805 * 8 7 6 25 25 H 1.08994 * 109.47542 * 29.68664 * 8 7 6 26 26 H 0.97005 * 120.00261 * 0.02562 * 9 8 7 27 27 H 0.97000 * 120.00244 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3229 1.0991 0.0000 4 1 2.0391 2.0267 0.0003 5 6 3.5968 0.6509 -0.0006 6 7 3.5813 -0.6541 0.0042 7 6 2.3098 -1.0812 -0.0006 8 6 1.8588 -2.5191 0.0000 9 7 1.7114 -2.9852 -1.3811 10 6 1.3141 -4.2494 -1.6269 11 8 1.0782 -5.0039 -0.7018 12 6 1.1611 -4.7133 -3.0067 13 1 1.3662 -4.0424 -3.8279 14 6 0.7488 -6.0271 -3.2622 15 7 0.5011 -6.8389 -2.2687 16 14 0.5529 -6.6189 -5.0231 17 1 1.8372 -7.1934 -5.4980 18 1 -0.5059 -7.6584 -5.0811 19 1 0.1716 -5.4751 -5.8901 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5143 23 1 4.4818 1.2698 -0.0003 24 1 0.9013 -2.5993 0.5146 25 1 2.5996 -3.1321 0.5132 26 1 1.8997 -2.3839 -2.1186 27 1 0.2152 -7.7488 -2.4456 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307193410.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:00 Heat of formation + Delta-G solvation = 10.755824 kcal Electronic energy + Delta-G solvation = -13161.461027 eV Core-core repulsion = 10726.978460 eV Total energy + Delta-G solvation = -2434.482567 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.93187 -37.09958 -33.69868 -32.61735 -32.28193 -30.98431 -27.53013 -26.03553 -24.31263 -21.52281 -19.80551 -19.27017 -17.74585 -16.89682 -15.32020 -15.07381 -14.71755 -14.13438 -13.78168 -13.25162 -12.84645 -12.73189 -12.42599 -12.30045 -11.69972 -11.28056 -11.08015 -10.81528 -10.37588 -10.16128 -9.80053 -9.72212 -8.77102 -8.18833 -7.46374 -7.34815 -6.09464 -4.54407 2.11890 3.17958 3.19998 3.23715 3.27135 3.30754 4.19421 4.67615 4.72144 5.02238 5.19328 5.29529 5.49003 5.60231 5.66230 5.92955 6.00485 6.35214 6.49892 6.62186 6.93985 7.48015 7.51939 8.05081 8.22050 8.26645 8.44248 9.11309 9.66789 10.69741 10.89113 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.054537 B = 0.006876 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.287251 B = 4071.365662 C = 4119.818515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.015 4.015 3 N -0.573 5.573 4 H 0.415 0.585 5 C 0.173 3.827 6 N -0.479 5.479 7 C 0.003 3.997 8 C 0.215 3.785 9 N -0.760 5.760 10 C 0.556 3.444 11 O -0.582 6.582 12 C -0.545 4.545 13 H 0.066 0.934 14 C 0.088 3.912 15 N -0.769 5.769 16 Si 0.907 3.093 17 H -0.272 1.272 18 H -0.280 1.280 19 H -0.266 1.266 20 H 0.071 0.929 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.205 0.795 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.380 0.620 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.767 15.869 1.836 15.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 N -0.177 5.177 4 H 0.252 0.748 5 C -0.111 4.111 6 N -0.198 5.198 7 C -0.125 4.125 8 C 0.089 3.911 9 N -0.415 5.415 10 C 0.360 3.640 11 O -0.465 6.465 12 C -0.582 4.582 13 H 0.085 0.915 14 C -0.131 4.131 15 N -0.398 5.398 16 Si 0.732 3.268 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.190 1.190 20 H 0.090 0.910 21 H 0.080 0.920 22 H 0.109 0.891 23 H 0.222 0.778 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.211 0.789 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.239 14.532 2.617 14.818 hybrid contribution -0.604 1.184 -1.222 1.806 sum 0.635 15.717 1.395 15.791 Atomic orbital electron populations 1.20271 0.86960 1.03770 1.02706 1.21138 0.94500 0.86695 1.10740 1.43230 1.07601 1.09000 1.57895 0.74783 1.24909 0.87277 0.92066 1.06815 1.70222 1.22535 1.08791 1.18220 1.20825 0.88398 0.95900 1.07425 1.19022 0.99158 0.85609 0.87308 1.46133 1.75800 1.15017 1.04584 1.18206 0.76534 0.78743 0.90531 1.90593 1.55037 1.54335 1.46516 1.20879 1.48755 0.97504 0.91037 0.91539 1.25694 0.93057 0.96385 0.98002 1.70023 1.32764 1.05302 1.31709 0.86393 0.78372 0.78856 0.83213 1.19790 1.20524 1.18993 0.91010 0.91982 0.89059 0.77814 0.92233 0.92178 0.78933 0.92202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.05 36.01 0.36 -0.56 15 2 C -0.01 -0.21 7.24 -81.60 -0.59 -0.80 15 3 N -0.57 -6.16 6.15 -10.30 -0.06 -6.22 15 4 H 0.42 2.72 8.96 -40.82 -0.37 2.35 15 5 C 0.17 2.14 13.04 -90.37 -1.18 0.96 15 6 N -0.48 -8.40 11.25 -10.87 -0.12 -8.52 15 7 C 0.00 0.06 6.46 -82.85 -0.54 -0.47 15 8 C 0.21 4.62 5.84 -5.19 -0.03 4.59 15 9 N -0.76 -18.33 5.54 -62.91 -0.35 -18.68 15 10 C 0.56 16.49 7.75 -12.99 -0.10 16.39 15 11 O -0.58 -19.45 15.02 5.20 0.08 -19.37 15 12 C -0.54 -15.91 9.54 -35.63 -0.34 -16.25 15 13 H 0.07 1.79 7.85 -52.49 -0.41 1.38 15 14 C 0.09 2.52 5.50 -17.37 -0.10 2.43 15 15 N -0.77 -23.60 11.83 55.55 0.66 -22.95 15 16 Si 0.91 20.62 29.56 -169.99 -5.02 15.60 15 17 H -0.27 -6.08 7.11 56.52 0.40 -5.68 15 18 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 19 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 20 H 0.07 0.75 8.14 -51.93 -0.42 0.32 15 21 H 0.06 0.57 8.14 -51.93 -0.42 0.14 15 22 H 0.09 1.26 7.81 -51.93 -0.41 0.85 15 23 H 0.21 1.58 8.06 -52.49 -0.42 1.16 15 24 H 0.06 1.26 7.80 -51.93 -0.40 0.86 15 25 H 0.06 1.42 8.14 -51.93 -0.42 1.00 15 26 H 0.38 8.44 8.44 -40.82 -0.34 8.10 15 27 H 0.27 7.42 8.29 -40.82 -0.34 7.08 15 LS Contribution 247.72 15.07 3.73 3.73 Total: -1.00 -37.43 247.72 -6.36 -43.79 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -2.76 Total: 6.34 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: -2.51 Total: 6.27 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: 0.12 Total: -56.36 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: 0.08 Total: -19.37 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -37.43 -6.36 -43.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307193410.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.543 kcal (2) G-P(sol) polarization free energy of solvation -37.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds