Wall clock time and date at job start Sun Mar 29 2020 21:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.36884 * 126.58692 * 2 1 4 4 H 0.97003 * 126.39735 * 0.02562 * 3 2 1 5 5 C 1.35041 * 107.20100 * 180.02562 * 3 2 1 6 6 N 1.30504 * 108.70376 * 359.76392 * 5 3 2 7 7 C 1.34133 * 109.25103 * 0.38598 * 6 5 3 8 8 C 1.50699 * 125.98443 * 179.88385 * 7 6 5 9 9 N 1.46499 * 109.46700 * 269.68329 * 8 7 6 10 10 C 1.34784 * 119.99893 * 180.02562 * 9 8 7 11 11 O 1.21682 * 119.99954 * 359.97438 * 10 9 8 12 12 C 1.46368 * 119.99916 * 179.72943 * 10 9 8 13 13 H 1.07998 * 120.00437 * 359.97438 * 12 10 9 14 14 C 1.40055 * 119.99853 * 179.97438 * 12 10 9 15 15 N 1.30662 * 119.99894 * 359.97438 * 14 12 10 16 16 Si 1.86805 * 119.99877 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46909 * 89.99994 * 16 14 12 18 18 H 1.48496 * 109.47072 * 210.00005 * 16 14 12 19 19 H 1.48500 * 109.46867 * 330.00008 * 16 14 12 20 20 H 1.08996 * 109.46952 * 269.97388 * 1 2 3 21 21 H 1.09000 * 109.47463 * 29.97772 * 1 2 3 22 22 H 1.09005 * 109.46833 * 149.97439 * 1 2 3 23 23 H 1.08001 * 125.64638 * 180.02562 * 5 3 2 24 24 H 1.08998 * 109.46743 * 149.68805 * 8 7 6 25 25 H 1.08994 * 109.47542 * 29.68664 * 8 7 6 26 26 H 0.97005 * 120.00261 * 0.02562 * 9 8 7 27 27 H 0.97000 * 120.00244 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3229 1.0991 0.0000 4 1 2.0391 2.0267 0.0003 5 6 3.5968 0.6509 -0.0006 6 7 3.5813 -0.6541 0.0042 7 6 2.3098 -1.0812 -0.0006 8 6 1.8588 -2.5191 0.0000 9 7 1.7114 -2.9852 -1.3811 10 6 1.3141 -4.2494 -1.6269 11 8 1.0782 -5.0039 -0.7018 12 6 1.1611 -4.7133 -3.0067 13 1 1.3662 -4.0424 -3.8279 14 6 0.7488 -6.0271 -3.2622 15 7 0.5011 -6.8389 -2.2687 16 14 0.5529 -6.6189 -5.0231 17 1 1.8372 -7.1934 -5.4980 18 1 -0.5059 -7.6584 -5.0811 19 1 0.1716 -5.4751 -5.8901 20 1 -0.3633 -0.0005 1.0276 21 1 -0.3634 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5143 23 1 4.4818 1.2698 -0.0003 24 1 0.9013 -2.5993 0.5146 25 1 2.5996 -3.1321 0.5132 26 1 1.8997 -2.3839 -2.1186 27 1 0.2152 -7.7488 -2.4456 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307193410.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:00 Heat of formation + Delta-G solvation = -18.819318 kcal Electronic energy + Delta-G solvation = -13162.743501 eV Core-core repulsion = 10726.978460 eV Total energy + Delta-G solvation = -2435.765041 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.03927 -39.29787 -35.55332 -34.49131 -33.71473 -32.44438 -29.28316 -27.70671 -25.86238 -22.57811 -21.81740 -20.76358 -19.24111 -18.47771 -17.42671 -16.49570 -16.04762 -15.85799 -15.64687 -14.80655 -14.37474 -14.13819 -13.66259 -13.47887 -13.26650 -13.17205 -13.04676 -12.68693 -12.59916 -11.99512 -10.95498 -10.91948 -10.87720 -9.93065 -9.46513 -9.22886 -8.26351 -6.84078 1.03332 1.41417 1.43754 1.58902 2.03255 2.26919 2.29312 2.49047 3.36584 3.60045 3.70937 4.01240 4.16832 4.39506 4.50712 4.72791 4.75224 4.99877 5.06590 5.28296 5.33321 5.68011 5.89000 6.20925 6.29278 6.64326 6.88013 7.16814 7.55805 8.50425 8.69290 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.054537 B = 0.006876 C = 0.006795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 513.287251 B = 4071.365662 C = 4119.818515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.005 3.995 3 N -0.551 5.551 4 H 0.440 0.560 5 C 0.195 3.805 6 N -0.535 5.535 7 C -0.042 4.042 8 C 0.224 3.776 9 N -0.745 5.745 10 C 0.538 3.462 11 O -0.633 6.633 12 C -0.573 4.573 13 H 0.085 0.915 14 C 0.028 3.972 15 N -0.822 5.822 16 Si 1.001 2.999 17 H -0.263 1.263 18 H -0.270 1.270 19 H -0.248 1.248 20 H 0.087 0.913 21 H 0.096 0.904 22 H 0.064 0.936 23 H 0.253 0.747 24 H 0.054 0.946 25 H 0.026 0.974 26 H 0.390 0.610 27 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.714 18.323 0.139 18.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.114 4.114 3 N -0.157 5.157 4 H 0.282 0.718 5 C -0.090 4.090 6 N -0.254 5.254 7 C -0.169 4.169 8 C 0.098 3.902 9 N -0.399 5.399 10 C 0.342 3.658 11 O -0.520 6.520 12 C -0.610 4.610 13 H 0.103 0.897 14 C -0.187 4.187 15 N -0.451 5.451 16 Si 0.820 3.180 17 H -0.188 1.188 18 H -0.195 1.195 19 H -0.171 1.171 20 H 0.105 0.895 21 H 0.114 0.886 22 H 0.083 0.917 23 H 0.269 0.731 24 H 0.072 0.928 25 H 0.044 0.956 26 H 0.223 0.777 27 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 1.191 17.080 0.921 17.146 hybrid contribution -0.539 0.544 -0.614 0.982 sum 0.652 17.624 0.307 17.638 Atomic orbital electron populations 1.20327 0.85319 1.04118 1.03823 1.21245 0.95423 0.86584 1.08110 1.43120 1.06634 1.09560 1.56354 0.71788 1.25741 0.88949 0.90859 1.03410 1.70097 1.22707 1.11813 1.20823 1.20269 0.89924 0.94568 1.12127 1.18813 0.97955 0.88199 0.85211 1.45839 1.74190 1.13625 1.06271 1.18652 0.76484 0.79950 0.90703 1.90541 1.57422 1.56199 1.47849 1.21404 1.49378 0.98843 0.91341 0.89664 1.27002 0.91650 0.96027 1.03981 1.70191 1.33497 1.06115 1.35322 0.84979 0.78792 0.78668 0.75556 1.18772 1.19509 1.17147 0.89491 0.88567 0.91707 0.73148 0.92796 0.95608 0.77749 0.91500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.67 10.05 71.24 0.72 -0.95 15 2 C 0.00 0.13 7.24 40.95 0.30 0.42 15 3 N -0.55 -9.83 6.15 -186.49 -1.15 -10.97 15 4 H 0.44 3.62 8.96 -92.71 -0.83 2.79 15 5 C 0.20 4.21 13.04 180.26 2.35 6.56 15 6 N -0.53 -18.40 11.25 -188.32 -2.12 -20.52 15 7 C -0.04 -1.50 6.46 41.39 0.27 -1.24 15 8 C 0.22 10.18 5.84 85.63 0.50 10.68 15 9 N -0.75 -37.45 5.54 -471.16 -2.61 -40.06 15 10 C 0.54 33.26 7.75 86.36 0.67 33.93 15 11 O -0.63 -44.64 15.02 -4.29 -0.06 -44.70 15 12 C -0.57 -34.04 9.54 24.83 0.24 -33.80 15 13 H 0.09 4.57 7.85 -2.91 -0.02 4.54 15 14 C 0.03 1.63 5.50 85.31 0.47 2.10 15 15 N -0.82 -51.83 11.83 21.84 0.26 -51.58 15 16 Si 1.00 42.09 29.56 68.60 2.03 44.12 15 17 H -0.26 -10.60 7.11 99.48 0.71 -9.89 15 18 H -0.27 -10.85 7.11 99.48 0.71 -10.15 15 19 H -0.25 -9.65 7.11 99.48 0.71 -8.95 15 20 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 21 H 0.10 1.40 8.14 -2.39 -0.02 1.38 15 22 H 0.06 1.77 7.81 -2.38 -0.02 1.75 15 23 H 0.25 2.68 8.06 -2.91 -0.02 2.66 15 24 H 0.05 2.45 7.80 -2.39 -0.02 2.43 15 25 H 0.03 1.32 8.14 -2.39 -0.02 1.30 15 26 H 0.39 17.74 8.44 -92.70 -0.78 16.96 15 27 H 0.28 15.62 8.29 -92.71 -0.77 14.85 15 Total: -1.00 -86.18 247.72 1.45 -84.73 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: -0.40 Total: 21.28 kcal Atomic # 6 Polarization: 12.19 SS G_CDS: 5.51 Total: 17.69 kcal Atomic # 7 Polarization: -117.51 SS G_CDS: -5.62 Total: -123.13 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -0.06 Total: -44.70 kcal Atomic # 14 Polarization: 42.09 SS G_CDS: 2.03 Total: 44.12 kcal Total: -86.18 1.45 -84.73 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307193410.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.913 kcal (2) G-P(sol) polarization free energy of solvation -86.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds