Wall clock time and date at job start Sun Mar 29 2020 21:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36349 * 120.43765 * 2 1 4 4 C 1.34985 * 120.87634 * 179.70741 * 3 2 1 5 5 N 1.33276 * 121.73073 * 0.58077 * 4 3 2 6 6 C 1.31569 * 120.75289 * 359.70347 * 5 4 3 7 7 N 1.38870 * 120.45084 * 180.02562 * 6 5 4 8 8 C 1.46497 * 120.00041 * 359.97438 * 7 6 5 9 9 C 1.50697 * 109.47403 * 180.02562 * 8 7 6 10 10 H 1.07999 * 120.00056 * 359.97438 * 9 8 7 11 11 C 1.37875 * 120.00112 * 180.02562 * 9 8 7 12 12 N 1.31510 * 120.00375 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99661 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46996 * 90.00556 * 13 11 9 15 15 H 1.48504 * 109.46989 * 209.99756 * 13 11 9 16 16 H 1.48493 * 109.47343 * 330.00076 * 13 11 9 17 17 C 1.35178 * 120.43843 * 180.26926 * 2 1 3 18 18 O 1.21938 * 120.78973 * 0.03155 * 17 2 1 19 19 H 1.09002 * 109.47391 * 269.72546 * 1 2 3 20 20 H 1.09001 * 109.46813 * 149.72603 * 1 2 3 21 21 H 1.09004 * 109.47041 * 29.72730 * 1 2 3 22 22 H 1.07998 * 119.56225 * 359.97438 * 3 2 1 23 23 H 1.07993 * 119.13162 * 180.28500 * 4 3 2 24 24 H 0.96996 * 119.99691 * 179.97438 * 7 6 5 25 25 H 1.09004 * 109.47188 * 299.99997 * 8 7 6 26 26 H 1.09000 * 109.47267 * 59.99680 * 8 7 6 27 27 H 0.96995 * 120.00345 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1557 1.1756 0.0000 4 6 3.5055 1.1859 0.0059 5 7 4.2152 0.0578 0.0005 6 6 3.6163 -1.1137 -0.0051 7 7 4.3619 -2.2852 -0.0102 8 6 5.8255 -2.2220 -0.0100 9 6 6.3887 -3.6198 -0.0167 10 1 5.7230 -4.4702 -0.0204 11 6 7.7539 -3.8129 -0.0172 12 7 8.5646 -2.7775 -0.0113 13 14 8.4519 -5.5456 -0.0248 14 1 8.6374 -5.9984 -1.4270 15 1 9.7614 -5.5548 0.6755 16 1 7.5121 -6.4610 0.6707 17 6 2.1498 -1.1655 -0.0055 18 8 1.5629 -2.2343 -0.0111 19 1 -0.3634 -0.0049 1.0276 20 1 -0.3633 -0.8875 -0.5181 21 1 -0.3633 0.8925 -0.5096 22 1 1.6157 2.1109 -0.0004 23 1 4.0240 2.1332 0.0104 24 1 3.9136 -3.1454 -0.0140 25 1 6.1663 -1.6891 -0.8977 26 1 6.1664 -1.6968 0.8822 27 1 9.5250 -2.9134 -0.0120 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307291381.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:25 Heat of formation + Delta-G solvation = -14.547033 kcal Electronic energy + Delta-G solvation = -13196.338893 eV Core-core repulsion = 10760.759112 eV Total energy + Delta-G solvation = -2435.579781 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.26236 -38.48640 -37.83730 -35.63919 -34.24075 -30.69328 -29.30495 -28.44028 -25.22857 -24.28548 -23.18290 -19.94219 -18.77534 -18.18308 -17.66987 -17.21440 -16.71118 -16.27147 -15.18978 -15.08616 -14.98749 -14.24520 -14.18341 -13.94203 -13.52211 -13.30583 -12.86798 -12.75903 -12.27068 -12.20259 -11.88312 -11.43735 -10.79955 -10.24626 -10.04587 -8.28264 -8.04573 -6.43458 0.03456 0.80253 1.39033 1.43715 1.44172 1.55984 2.34415 2.56624 2.80046 3.05926 3.30783 3.90348 4.05257 4.28420 4.46235 4.63318 4.76901 4.91222 5.11593 5.34265 5.49630 5.56255 5.75771 5.86592 6.21138 6.54306 6.72099 6.79374 7.25885 7.43135 8.83369 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.062302 B = 0.007044 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.319489 B = 3973.901499 C = 4402.773303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.478 5.478 3 C 0.008 3.992 4 C -0.001 4.001 5 N -0.541 5.541 6 C 0.315 3.685 7 N -0.684 5.684 8 C 0.287 3.713 9 C -0.565 4.565 10 H 0.070 0.930 11 C 0.011 3.989 12 N -0.923 5.923 13 Si 0.980 3.020 14 H -0.270 1.270 15 H -0.277 1.277 16 H -0.264 1.264 17 C 0.468 3.532 18 O -0.575 6.575 19 H 0.088 0.912 20 H 0.075 0.925 21 H 0.131 0.869 22 H 0.219 0.781 23 H 0.192 0.808 24 H 0.407 0.593 25 H -0.003 1.003 26 H -0.003 1.003 27 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.623 9.143 -0.047 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.193 5.193 3 C -0.119 4.119 4 C -0.140 4.140 5 N -0.271 5.271 6 C 0.052 3.948 7 N -0.318 5.318 8 C 0.165 3.835 9 C -0.603 4.603 10 H 0.088 0.912 11 C -0.189 4.189 12 N -0.561 5.561 13 Si 0.804 3.196 14 H -0.195 1.195 15 H -0.203 1.203 16 H -0.188 1.188 17 C 0.259 3.741 18 O -0.456 6.456 19 H 0.106 0.894 20 H 0.093 0.907 21 H 0.149 0.851 22 H 0.236 0.764 23 H 0.209 0.791 24 H 0.244 0.756 25 H 0.015 0.985 26 H 0.015 0.985 27 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -13.873 8.815 -0.041 16.437 hybrid contribution -0.201 -1.064 0.003 1.083 sum -14.074 7.751 -0.038 16.067 Atomic orbital electron populations 1.22434 0.74100 1.06183 1.05028 1.45287 1.10343 1.05356 1.58314 1.22995 0.93680 0.90457 1.04726 1.22093 0.90832 0.96144 1.04888 1.67560 1.41006 0.97558 1.20997 1.21519 0.87329 0.88766 0.97218 1.44884 1.07093 1.04227 1.75560 1.18526 0.73954 0.96299 0.94714 1.21614 0.92863 0.92418 1.53390 0.91216 1.25921 0.96891 1.02279 0.93789 1.70099 1.04090 1.32254 1.49670 0.85227 0.77684 0.78094 0.78632 1.19538 1.20264 1.18792 1.19071 0.88178 0.84932 0.81947 1.90856 1.71103 1.29141 1.54511 0.89355 0.90665 0.85095 0.76447 0.79147 0.75641 0.98512 0.98501 0.92104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.97 10.46 127.77 1.34 2.31 15 2 N -0.48 -12.29 3.02 -666.78 -2.01 -14.30 15 3 C 0.01 0.16 10.32 83.24 0.86 1.02 15 4 C 0.00 -0.02 11.02 83.73 0.92 0.90 15 5 N -0.54 -22.49 9.69 -188.82 -1.83 -24.32 15 6 C 0.32 13.81 7.73 135.36 1.05 14.86 15 7 N -0.68 -33.69 5.70 -342.35 -1.95 -35.64 15 8 C 0.29 16.37 5.48 85.63 0.47 16.84 15 9 C -0.56 -32.75 9.28 25.60 0.24 -32.51 15 10 H 0.07 3.85 7.60 -2.91 -0.02 3.83 15 11 C 0.01 0.65 5.46 84.65 0.46 1.11 15 12 N -0.92 -55.86 13.29 21.45 0.28 -55.57 15 13 Si 0.98 44.14 29.54 68.60 2.03 46.17 15 14 H -0.27 -11.73 7.11 99.48 0.71 -11.03 15 15 H -0.28 -12.09 7.11 99.48 0.71 -11.38 15 16 H -0.26 -11.42 7.11 99.48 0.71 -10.71 15 17 C 0.47 17.61 7.65 86.40 0.66 18.27 15 18 O -0.57 -24.24 16.33 -5.11 -0.08 -24.32 15 19 H 0.09 1.16 8.14 -2.39 -0.02 1.14 15 20 H 0.07 1.45 7.49 -2.39 -0.02 1.43 15 21 H 0.13 0.85 8.05 -2.38 -0.02 0.83 15 22 H 0.22 1.68 8.06 -2.91 -0.02 1.65 15 23 H 0.19 3.98 8.06 -2.91 -0.02 3.95 15 24 H 0.41 19.36 7.91 -92.71 -0.73 18.63 15 25 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 15 26 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 15 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -75.72 246.19 2.88 -72.83 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.45 Total: 12.35 kcal Atomic # 6 Polarization: 16.81 SS G_CDS: 6.00 Total: 22.81 kcal Atomic # 7 Polarization: -124.32 SS G_CDS: -5.51 Total: -129.83 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.08 Total: -24.32 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -75.72 2.88 -72.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307291381.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.287 kcal (2) G-P(sol) polarization free energy of solvation -75.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds