Wall clock time and date at job start Sun Mar 29 2020 21:26:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36125 * 126.19687 * 2 1 4 4 N 1.40167 * 126.14748 * 0.03038 * 3 2 1 5 5 C 1.34771 * 120.00036 * 179.97438 * 4 3 2 6 6 O 1.21786 * 120.00006 * 359.97438 * 5 4 3 7 7 C 1.41799 * 120.00003 * 179.97438 * 5 4 3 8 8 H 1.07999 * 119.99927 * 353.76448 * 7 5 4 9 9 C 1.40131 * 120.00536 * 173.76707 * 7 5 4 10 10 N 1.30640 * 119.99365 * 6.25137 * 9 7 5 11 11 Si 1.86800 * 120.00426 * 186.25422 * 9 7 5 12 12 H 1.48499 * 109.46895 * 94.98445 * 11 9 7 13 13 H 1.48497 * 109.46792 * 214.98060 * 11 9 7 14 14 H 1.48500 * 109.46887 * 334.97972 * 11 9 7 15 15 C 1.40411 * 107.70846 * 180.02562 * 3 2 1 16 16 N 1.30781 * 108.20878 * 0.02562 * 15 3 2 17 17 N 1.35178 * 126.19894 * 179.69695 * 2 1 3 18 18 C 1.46496 * 125.97475 * 359.97312 * 17 2 1 19 19 H 1.09000 * 109.47352 * 89.99666 * 1 2 3 20 20 H 1.08996 * 109.47703 * 329.99399 * 1 2 3 21 21 H 1.09005 * 109.47204 * 209.99436 * 1 2 3 22 22 H 0.97000 * 119.99350 * 359.97438 * 4 3 2 23 23 H 0.97005 * 119.99829 * 180.02562 * 10 9 7 24 24 H 1.08006 * 125.89872 * 179.97438 * 15 3 2 25 25 H 1.09005 * 109.46419 * 90.00556 * 18 17 2 26 26 H 1.09002 * 109.47019 * 210.00103 * 18 17 2 27 27 H 1.08997 * 109.47306 * 330.00635 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3109 1.0985 0.0000 4 7 1.8857 2.4342 0.0006 5 6 2.7935 3.4303 0.0010 6 8 3.9832 3.1699 0.0014 7 6 2.3635 4.7815 0.0011 8 1 1.3137 5.0140 -0.1008 9 6 3.3004 5.8151 0.1333 10 7 4.5780 5.5424 0.1337 11 14 2.7226 7.5828 0.3091 12 1 2.6531 7.9399 1.7488 13 1 3.6785 8.4867 -0.3796 14 1 1.3769 7.7267 -0.3023 15 6 3.6425 0.6533 -0.0006 16 7 3.6361 -0.6545 -0.0015 17 7 2.3053 -1.0908 0.0058 18 6 1.8568 -2.4854 0.0137 19 1 -0.3634 0.0001 -1.0276 20 1 -0.3634 0.8899 0.5139 21 1 -0.3634 -0.8901 0.5138 22 1 0.9382 2.6414 0.0007 23 1 5.2266 6.2578 0.2256 24 1 4.5206 1.2822 -0.0011 25 1 1.7454 -2.8370 -1.0121 26 1 2.5931 -3.1009 0.5307 27 1 0.8985 -2.5560 0.5282 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307350343.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:36 Heat of formation + Delta-G solvation = 11.825177 kcal Electronic energy + Delta-G solvation = -13406.828375 eV Core-core repulsion = 10972.392179 eV Total energy + Delta-G solvation = -2434.436196 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.14365 -39.36866 -35.41486 -34.44986 -34.09689 -31.85913 -29.02324 -27.45536 -26.72970 -23.14801 -21.44445 -20.66474 -19.00129 -17.70905 -17.31126 -16.54800 -16.33211 -15.88553 -14.83041 -14.73759 -14.54844 -13.88517 -13.67614 -13.44489 -13.24350 -13.12922 -12.81561 -12.78025 -12.60016 -11.97518 -11.61934 -11.25628 -10.84832 -10.04353 -9.76939 -8.33317 -8.26568 -6.90860 0.91609 1.42317 1.42739 1.60122 1.76504 1.88182 2.25706 2.55451 3.15019 3.74680 3.90954 3.93827 4.25055 4.47144 4.56359 4.69144 4.79284 4.82248 5.08763 5.15118 5.27872 5.56691 5.94614 6.18642 6.29415 6.51879 6.80469 6.81214 7.56124 8.47553 8.65716 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.069168 B = 0.007769 C = 0.007026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 404.715137 B = 3603.331878 C = 3984.250141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.021 3.979 3 C 0.002 3.998 4 N -0.668 5.668 5 C 0.532 3.468 6 O -0.619 6.619 7 C -0.567 4.567 8 H 0.092 0.908 9 C 0.032 3.968 10 N -0.805 5.805 11 Si 1.002 2.998 12 H -0.263 1.263 13 H -0.273 1.273 14 H -0.245 1.245 15 C 0.015 3.985 16 N -0.325 5.325 17 N -0.373 5.373 18 C 0.098 3.902 19 H 0.090 0.910 20 H 0.082 0.918 21 H 0.099 0.901 22 H 0.404 0.596 23 H 0.277 0.723 24 H 0.170 0.830 25 H 0.086 0.914 26 H 0.089 0.911 27 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 -8.777 0.312 14.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.109 4.109 3 C -0.104 4.104 4 N -0.314 5.314 5 C 0.341 3.659 6 O -0.507 6.507 7 C -0.602 4.602 8 H 0.110 0.890 9 C -0.186 4.186 10 N -0.433 5.433 11 Si 0.821 3.179 12 H -0.188 1.188 13 H -0.198 1.198 14 H -0.168 1.168 15 C -0.170 4.170 16 N -0.150 5.150 17 N -0.160 5.160 18 C -0.041 4.041 19 H 0.108 0.892 20 H 0.101 0.899 21 H 0.118 0.882 22 H 0.239 0.761 23 H 0.088 0.912 24 H 0.187 0.813 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.290 -10.044 0.312 14.383 hybrid contribution -0.355 1.580 0.040 1.620 sum -10.645 -8.463 0.353 13.604 Atomic orbital electron populations 1.20429 0.83505 1.04954 1.04222 1.20929 0.95887 0.85388 1.08732 1.18061 0.92723 0.86491 1.13084 1.42940 1.09819 1.01505 1.77100 1.17416 0.84805 0.86125 0.77582 1.90477 1.18387 1.84368 1.57433 1.20527 0.96306 0.90233 1.53126 0.89017 1.27029 0.94013 1.06419 0.91144 1.70189 1.03361 1.35806 1.33969 0.84939 0.79499 0.74168 0.79270 1.18770 1.19773 1.16839 1.24206 0.98800 0.91349 1.02606 1.77119 0.99070 1.12216 1.26574 1.48335 1.02636 1.07100 1.57975 1.22162 1.02275 0.75138 1.04543 0.89172 0.89907 0.88197 0.76083 0.91249 0.81342 0.89570 0.89199 0.86418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.53 9.94 71.23 0.71 -0.82 15 2 C 0.02 0.73 6.97 41.55 0.29 1.02 15 3 C 0.00 0.11 6.86 37.84 0.26 0.37 15 4 N -0.67 -31.85 5.44 -311.99 -1.70 -33.55 15 5 C 0.53 31.37 7.53 85.12 0.64 32.02 15 6 O -0.62 -41.53 12.05 -4.62 -0.06 -41.59 15 7 C -0.57 -31.67 9.31 23.61 0.22 -31.45 15 8 H 0.09 4.51 7.86 -2.91 -0.02 4.49 15 9 C 0.03 1.73 5.49 85.33 0.47 2.20 15 10 N -0.80 -48.67 11.76 21.85 0.26 -48.41 15 11 Si 1.00 39.89 29.56 68.60 2.03 41.92 15 12 H -0.26 -10.04 7.11 99.48 0.71 -9.33 15 13 H -0.27 -10.52 7.11 99.48 0.71 -9.81 15 14 H -0.25 -8.96 7.11 99.48 0.71 -8.25 15 15 C 0.02 0.78 10.84 85.38 0.93 1.70 15 16 N -0.33 -14.31 12.56 -56.69 -0.71 -15.03 15 17 N -0.37 -12.55 4.02 -355.22 -1.43 -13.98 15 18 C 0.10 1.88 11.27 127.77 1.44 3.32 15 19 H 0.09 1.62 8.14 -2.39 -0.02 1.60 15 20 H 0.08 1.70 7.61 -2.39 -0.02 1.68 15 21 H 0.10 1.39 7.08 -2.38 -0.02 1.38 15 22 H 0.40 15.89 8.05 -92.71 -0.75 15.15 15 23 H 0.28 15.11 8.29 -92.70 -0.77 14.34 15 24 H 0.17 9.84 5.91 -2.91 -0.02 9.82 15 25 H 0.09 1.36 8.14 -2.38 -0.02 1.34 15 26 H 0.09 1.63 8.14 -2.39 -0.02 1.61 15 27 H 0.12 1.38 7.05 -2.39 -0.02 1.37 15 Total: -1.00 -80.69 241.19 3.80 -76.89 By element: Atomic # 1 Polarization: 24.93 SS G_CDS: 0.46 Total: 25.38 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 4.95 Total: 8.36 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -3.58 Total: -110.96 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.06 Total: -41.59 kcal Atomic # 14 Polarization: 39.89 SS G_CDS: 2.03 Total: 41.92 kcal Total: -80.69 3.80 -76.89 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307350343.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.715 kcal (2) G-P(sol) polarization free energy of solvation -80.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds