Wall clock time and date at job start Sun Mar 29 2020 21:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 120.00322 * 2 1 4 4 H 1.48502 * 109.47051 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47774 * 119.99783 * 3 2 1 6 6 H 1.48497 * 109.47414 * 240.00287 * 3 2 1 7 7 C 1.40054 * 120.00084 * 179.72314 * 2 1 3 8 8 H 1.07998 * 119.99711 * 4.52920 * 7 2 1 9 9 C 1.46373 * 120.00289 * 184.53297 * 7 2 1 10 10 O 1.21689 * 119.99871 * 6.33318 * 9 7 2 11 11 N 1.34778 * 120.00125 * 186.33337 * 9 7 2 12 12 C 1.47127 * 125.59141 * 0.02715 * 11 9 7 13 13 C 1.54581 * 107.35936 * 180.89662 * 12 11 9 14 14 C 1.53748 * 102.74734 * 20.84464 * 13 12 11 15 15 C 1.52317 * 116.26320 * 197.34078 * 14 13 12 16 16 C 1.54052 * 86.61082 * 216.60720 * 15 14 13 17 17 C 1.52315 * 116.25538 * 95.00422 * 14 13 12 18 18 C 1.47706 * 125.59202 * 179.71403 * 11 9 7 19 19 H 0.96998 * 119.99892 * 174.89684 * 1 2 3 20 20 H 1.09002 * 109.86718 * 300.34301 * 12 11 9 21 21 H 1.09008 * 109.86698 * 61.45269 * 12 11 9 22 22 H 1.09003 * 110.75510 * 139.15873 * 13 12 11 23 23 H 1.09001 * 110.75682 * 262.34520 * 13 12 11 24 24 H 1.09001 * 113.69107 * 331.03857 * 15 14 13 25 25 H 1.08998 * 113.68690 * 102.17695 * 15 14 13 26 26 H 1.08997 * 113.56365 * 269.69795 * 16 15 14 27 27 H 1.08999 * 113.56683 * 138.94746 * 16 15 14 28 28 H 1.09007 * 113.68432 * 257.82835 * 17 14 13 29 29 H 1.08998 * 113.69163 * 28.96739 * 17 14 13 30 30 H 1.09004 * 110.39758 * 276.27773 * 18 11 9 31 31 H 1.09001 * 110.39429 * 38.67914 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2758 2.7464 -0.0006 5 1 3.0945 1.6965 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0070 -1.2129 0.0059 8 1 1.4695 -2.1470 -0.0635 9 6 3.4673 -1.2144 0.1061 10 8 4.0649 -0.1723 0.2999 11 7 4.1500 -2.3701 -0.0164 12 6 3.5553 -3.6950 -0.2522 13 6 4.7130 -4.7183 -0.2990 14 6 5.8445 -3.9846 0.4393 15 6 7.2512 -4.5293 0.2283 16 6 7.5096 -4.1797 1.7062 17 6 5.9886 -4.2896 1.9247 18 6 5.6182 -2.5131 0.0575 19 1 -0.4850 -0.8367 -0.0747 20 1 2.8728 -3.9446 0.5603 21 1 3.0202 -3.6972 -1.2019 22 1 4.4402 -5.6344 0.2250 23 1 4.9964 -4.9341 -1.3291 24 1 7.2800 -5.5987 0.0197 25 1 7.8473 -3.9432 -0.4711 26 1 7.8995 -3.1727 1.8541 27 1 8.0824 -4.9382 2.2397 28 1 5.5820 -3.5131 2.5726 29 1 5.6569 -5.2906 2.2004 30 1 6.0703 -2.2954 -0.9102 31 1 6.0258 -1.8551 0.8249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307439047.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:09 Heat of formation + Delta-G solvation = -36.515052 kcal Electronic energy + Delta-G solvation = -14050.380249 eV Core-core repulsion = 11717.388206 eV Total energy + Delta-G solvation = -2332.992042 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.08815 -37.42792 -34.75969 -32.87125 -29.79959 -28.05298 -25.85647 -25.50840 -23.09515 -21.41808 -19.33290 -18.23571 -17.41114 -15.62654 -15.34475 -15.12357 -14.49945 -14.14258 -13.27906 -13.07360 -12.72904 -12.48542 -12.23917 -11.94106 -11.69316 -11.54040 -11.24952 -10.87277 -10.36050 -10.27427 -10.17617 -10.06496 -9.88036 -9.14468 -8.94532 -7.92347 -7.52804 -6.97442 -4.89879 3.59942 3.69096 4.03926 4.29441 4.34540 4.56843 4.60266 4.69854 4.79806 4.92316 5.21816 5.48826 5.50268 5.59645 5.64163 5.74648 5.83168 5.93785 6.00841 6.08918 6.19703 6.31675 6.35449 6.43600 6.54421 6.58226 7.08401 7.71843 7.79176 8.18835 8.85898 9.07913 10.06138 10.35167 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053995 B = 0.009131 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.445975 B = 3065.594704 C = 3359.013127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.060 3.940 3 Si 1.129 2.871 4 H -0.322 1.322 5 H -0.281 1.281 6 H -0.291 1.291 7 C -0.592 4.592 8 H 0.071 0.929 9 C 0.567 3.433 10 O -0.617 6.617 11 N -0.636 5.636 12 C 0.123 3.877 13 C -0.120 4.120 14 C -0.096 4.096 15 C -0.125 4.125 16 C -0.140 4.140 17 C -0.125 4.125 18 C 0.137 3.863 19 H 0.277 0.723 20 H 0.054 0.946 21 H 0.054 0.946 22 H 0.072 0.928 23 H 0.071 0.929 24 H 0.081 0.919 25 H 0.068 0.932 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.052 0.948 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.610 -10.666 0.575 15.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.461 5.461 2 C -0.157 4.157 3 Si 0.962 3.038 4 H -0.253 1.253 5 H -0.208 1.208 6 H -0.219 1.219 7 C -0.628 4.628 8 H 0.090 0.910 9 C 0.378 3.622 10 O -0.510 6.510 11 N -0.372 5.372 12 C -0.001 4.001 13 C -0.158 4.158 14 C -0.097 4.097 15 C -0.162 4.162 16 C -0.178 4.178 17 C -0.162 4.162 18 C 0.014 3.986 19 H 0.088 0.912 20 H 0.072 0.928 21 H 0.073 0.927 22 H 0.091 0.909 23 H 0.089 0.911 24 H 0.099 0.901 25 H 0.087 0.913 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.600 -8.534 0.744 13.629 hybrid contribution -0.004 -2.114 -0.146 2.119 sum 10.596 -10.648 0.598 15.034 Atomic orbital electron populations 1.70655 1.07549 1.31939 1.35949 1.27167 0.95342 1.04958 0.88258 0.82399 0.71432 0.70805 0.79167 1.25335 1.20784 1.21869 1.22063 0.89605 0.96309 1.54816 0.91031 1.18229 0.88403 0.79933 0.75654 1.90145 1.70725 1.30417 1.59711 1.48276 1.04602 1.07147 1.77163 1.21643 0.94990 0.83156 1.00348 1.22466 0.95195 0.97697 1.00394 1.22024 0.94824 0.96410 0.96399 1.22667 0.95737 1.00795 0.97050 1.22911 0.96595 1.01696 0.96551 1.22688 0.96034 1.01738 0.95725 1.21486 0.84224 0.92958 0.99978 0.91247 0.92775 0.92721 0.90907 0.91060 0.90065 0.91296 0.90176 0.91772 0.91125 0.90206 0.92971 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.53 13.64 55.55 0.76 -23.78 16 2 C 0.06 1.78 5.52 -17.36 -0.10 1.68 16 3 Si 1.13 30.70 25.99 -169.99 -4.42 26.28 16 4 H -0.32 -8.35 7.11 56.52 0.40 -7.95 16 5 H -0.28 -7.86 6.78 56.52 0.38 -7.48 16 6 H -0.29 -7.95 7.11 56.52 0.40 -7.55 16 7 C -0.59 -17.28 9.48 -35.63 -0.34 -17.62 16 8 H 0.07 2.06 7.37 -52.49 -0.39 1.67 16 9 C 0.57 15.90 7.61 -12.99 -0.10 15.80 16 10 O -0.62 -18.58 12.34 5.20 0.06 -18.52 16 11 N -0.64 -14.57 3.34 -172.45 -0.58 -15.15 16 12 C 0.12 2.31 6.08 -2.87 -0.02 2.29 16 13 C -0.12 -1.69 6.34 -25.51 -0.16 -1.85 16 14 C -0.10 -1.38 0.93 -154.50 -0.14 -1.53 16 15 C -0.12 -1.43 7.45 -26.53 -0.20 -1.62 16 16 C -0.14 -1.60 7.99 -25.68 -0.21 -1.80 16 17 C -0.12 -1.66 7.40 -26.53 -0.20 -1.86 16 18 C 0.14 2.60 6.18 -3.02 -0.02 2.58 16 19 H 0.28 7.82 8.72 -40.82 -0.36 7.46 16 20 H 0.05 1.04 8.12 -51.93 -0.42 0.62 16 21 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 22 H 0.07 0.88 7.99 -51.93 -0.42 0.47 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 26 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 1.08 8.13 -51.92 -0.42 0.66 16 29 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.07 1.35 8.00 -51.93 -0.42 0.93 16 LS Contribution 254.62 15.07 3.84 3.84 Total: -1.00 -32.38 254.62 -6.41 -38.79 By element: Atomic # 1 Polarization: -2.93 SS G_CDS: -4.61 Total: -7.53 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.47 Total: -3.93 kcal Atomic # 7 Polarization: -39.11 SS G_CDS: 0.18 Total: -38.93 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.06 Total: -18.52 kcal Atomic # 14 Polarization: 30.70 SS G_CDS: -4.42 Total: 26.28 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -32.38 -6.41 -38.79 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307439047.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.279 kcal (2) G-P(sol) polarization free energy of solvation -32.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds