Wall clock time and date at job start Sun Mar 29 2020 21:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30671 * 1 3 3 Si 1.86798 * 120.00322 * 2 1 4 4 H 1.48502 * 109.47051 * 359.97438 * 3 2 1 5 5 H 1.48498 * 109.47774 * 119.99783 * 3 2 1 6 6 H 1.48497 * 109.47414 * 240.00287 * 3 2 1 7 7 C 1.40054 * 120.00084 * 179.72314 * 2 1 3 8 8 H 1.07998 * 119.99711 * 4.52920 * 7 2 1 9 9 C 1.46373 * 120.00289 * 184.53297 * 7 2 1 10 10 O 1.21689 * 119.99871 * 6.33318 * 9 7 2 11 11 N 1.34778 * 120.00125 * 186.33337 * 9 7 2 12 12 C 1.47127 * 125.59141 * 0.02715 * 11 9 7 13 13 C 1.54581 * 107.35936 * 180.89662 * 12 11 9 14 14 C 1.53748 * 102.74734 * 20.84464 * 13 12 11 15 15 C 1.52317 * 116.26320 * 197.34078 * 14 13 12 16 16 C 1.54052 * 86.61082 * 216.60720 * 15 14 13 17 17 C 1.52315 * 116.25538 * 95.00422 * 14 13 12 18 18 C 1.47706 * 125.59202 * 179.71403 * 11 9 7 19 19 H 0.96998 * 119.99892 * 174.89684 * 1 2 3 20 20 H 1.09002 * 109.86718 * 300.34301 * 12 11 9 21 21 H 1.09008 * 109.86698 * 61.45269 * 12 11 9 22 22 H 1.09003 * 110.75510 * 139.15873 * 13 12 11 23 23 H 1.09001 * 110.75682 * 262.34520 * 13 12 11 24 24 H 1.09001 * 113.69107 * 331.03857 * 15 14 13 25 25 H 1.08998 * 113.68690 * 102.17695 * 15 14 13 26 26 H 1.08997 * 113.56365 * 269.69795 * 16 15 14 27 27 H 1.08999 * 113.56683 * 138.94746 * 16 15 14 28 28 H 1.09007 * 113.68432 * 257.82835 * 17 14 13 29 29 H 1.08998 * 113.69163 * 28.96739 * 17 14 13 30 30 H 1.09004 * 110.39758 * 276.27773 * 18 11 9 31 31 H 1.09001 * 110.39429 * 38.67914 * 18 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2408 1.6177 0.0000 4 1 1.2758 2.7464 -0.0006 5 1 3.0945 1.6965 1.2125 6 1 3.0945 1.6964 -1.2125 7 6 2.0070 -1.2129 0.0059 8 1 1.4695 -2.1470 -0.0635 9 6 3.4673 -1.2144 0.1061 10 8 4.0649 -0.1723 0.2999 11 7 4.1500 -2.3701 -0.0164 12 6 3.5553 -3.6950 -0.2522 13 6 4.7130 -4.7183 -0.2990 14 6 5.8445 -3.9846 0.4393 15 6 7.2512 -4.5293 0.2283 16 6 7.5096 -4.1797 1.7062 17 6 5.9886 -4.2896 1.9247 18 6 5.6182 -2.5131 0.0575 19 1 -0.4850 -0.8367 -0.0747 20 1 2.8728 -3.9446 0.5603 21 1 3.0202 -3.6972 -1.2019 22 1 4.4402 -5.6344 0.2250 23 1 4.9964 -4.9341 -1.3291 24 1 7.2800 -5.5987 0.0197 25 1 7.8473 -3.9432 -0.4711 26 1 7.8995 -3.1727 1.8541 27 1 8.0824 -4.9382 2.2397 28 1 5.5820 -3.5131 2.5726 29 1 5.6569 -5.2906 2.2004 30 1 6.0703 -2.2954 -0.9102 31 1 6.0258 -1.8551 0.8249 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307439047.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:09 Heat of formation + Delta-G solvation = -58.016118 kcal Electronic energy + Delta-G solvation = -14051.312605 eV Core-core repulsion = 11717.388206 eV Total energy + Delta-G solvation = -2333.924398 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.39450 -39.35190 -36.38265 -35.15067 -31.32457 -29.72095 -27.65279 -26.60490 -24.64237 -22.61693 -21.36310 -19.64502 -19.21317 -17.56817 -16.93177 -16.42099 -16.08923 -15.83191 -15.07905 -14.75668 -14.62909 -14.08600 -13.62361 -13.38636 -13.24064 -13.00179 -12.61898 -12.41250 -12.36224 -11.96165 -11.39608 -11.31744 -11.23301 -11.11603 -10.96098 -10.15043 -9.40485 -9.26104 -7.18583 1.37910 1.49300 1.90974 2.13720 2.32887 2.65897 3.21279 3.41435 3.58554 3.68254 3.96038 4.01049 4.27975 4.39973 4.48142 4.65515 4.80732 4.83031 4.88126 4.94108 4.97793 5.08702 5.10740 5.23928 5.25353 5.43843 5.45932 5.55924 5.70424 6.04649 6.58027 7.04724 7.88420 8.05892 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053995 B = 0.009131 C = 0.008334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 518.445975 B = 3065.594704 C = 3359.013127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.844 5.844 2 C 0.029 3.971 3 Si 1.161 2.839 4 H -0.301 1.301 5 H -0.298 1.298 6 H -0.296 1.296 7 C -0.609 4.609 8 H 0.067 0.933 9 C 0.558 3.442 10 O -0.645 6.645 11 N -0.642 5.642 12 C 0.113 3.887 13 C -0.103 4.103 14 C -0.098 4.098 15 C -0.108 4.108 16 C -0.135 4.135 17 C -0.129 4.129 18 C 0.130 3.870 19 H 0.278 0.722 20 H 0.045 0.955 21 H 0.048 0.952 22 H 0.103 0.897 23 H 0.090 0.910 24 H 0.111 0.889 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.057 0.943 31 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.148 -12.756 0.313 17.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.185 4.185 3 Si 0.993 3.007 4 H -0.231 1.231 5 H -0.226 1.226 6 H -0.224 1.224 7 C -0.646 4.646 8 H 0.085 0.915 9 C 0.367 3.633 10 O -0.541 6.541 11 N -0.376 5.376 12 C -0.010 4.010 13 C -0.141 4.141 14 C -0.099 4.099 15 C -0.146 4.146 16 C -0.172 4.172 17 C -0.166 4.166 18 C 0.007 3.993 19 H 0.088 0.912 20 H 0.063 0.937 21 H 0.067 0.933 22 H 0.122 0.878 23 H 0.109 0.891 24 H 0.129 0.871 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.107 0.893 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.075 0.925 31 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 12.134 -10.669 0.472 16.164 hybrid contribution -0.466 -1.523 -0.051 1.593 sum 11.668 -12.192 0.421 16.881 Atomic orbital electron populations 1.70659 1.07615 1.32111 1.36846 1.27823 0.95751 1.06689 0.88247 0.81970 0.70752 0.70004 0.78017 1.23115 1.22599 1.22414 1.22208 0.90754 0.96160 1.55445 0.91524 1.18163 0.88418 0.81125 0.75606 1.90111 1.71259 1.31963 1.60745 1.48230 1.06741 1.07298 1.75292 1.21914 0.96988 0.82528 0.99595 1.22471 0.92516 0.97005 1.02088 1.22038 0.97279 0.93050 0.97523 1.22671 0.92625 1.02353 0.96915 1.22887 0.95291 1.01990 0.97048 1.22780 0.97657 1.01958 0.94197 1.21718 0.81511 0.96263 0.99761 0.91161 0.93653 0.93317 0.87837 0.89101 0.87110 0.90927 0.91323 0.89253 0.94257 0.87820 0.92482 0.93484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -49.95 13.64 21.84 0.30 -49.65 16 2 C 0.03 1.76 5.52 85.31 0.47 2.23 16 3 Si 1.16 63.05 25.99 68.60 1.78 64.83 16 4 H -0.30 -15.11 7.11 99.48 0.71 -14.41 16 5 H -0.30 -16.88 6.78 99.48 0.67 -16.21 16 6 H -0.30 -16.17 7.11 99.48 0.71 -15.46 16 7 C -0.61 -36.24 9.48 24.83 0.24 -36.01 16 8 H 0.07 3.92 7.37 -2.91 -0.02 3.90 16 9 C 0.56 31.88 7.61 86.36 0.66 32.54 16 10 O -0.65 -39.67 12.34 -4.31 -0.05 -39.72 16 11 N -0.64 -29.50 3.34 -817.74 -2.73 -32.23 16 12 C 0.11 4.13 6.08 86.80 0.53 4.66 16 13 C -0.10 -2.55 6.34 31.38 0.20 -2.35 16 14 C -0.10 -2.56 0.93 -52.18 -0.05 -2.61 16 15 C -0.11 -2.00 7.45 30.72 0.23 -1.77 16 16 C -0.13 -2.63 7.99 31.28 0.25 -2.38 16 17 C -0.13 -3.10 7.40 30.72 0.23 -2.88 16 18 C 0.13 4.84 6.18 86.38 0.53 5.38 16 19 H 0.28 15.85 8.72 -92.71 -0.81 15.04 16 20 H 0.05 1.72 8.12 -2.39 -0.02 1.70 16 21 H 0.05 1.82 8.14 -2.38 -0.02 1.81 16 22 H 0.10 2.00 7.99 -2.39 -0.02 1.98 16 23 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 24 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.07 1.33 8.12 -2.39 -0.02 1.31 16 26 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.04 1.18 8.13 -2.38 -0.02 1.16 16 29 H 0.10 2.02 8.05 -2.39 -0.02 2.00 16 30 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 31 H 0.05 1.92 8.00 -2.39 -0.02 1.90 16 Total: -1.00 -70.62 254.62 3.61 -67.01 By element: Atomic # 1 Polarization: -8.09 SS G_CDS: 1.03 Total: -7.06 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: 3.28 Total: -3.19 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -2.43 Total: -81.88 kcal Atomic # 8 Polarization: -39.67 SS G_CDS: -0.05 Total: -39.72 kcal Atomic # 14 Polarization: 63.05 SS G_CDS: 1.78 Total: 64.83 kcal Total: -70.62 3.61 -67.01 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307439047.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.996 kcal (2) G-P(sol) polarization free energy of solvation -70.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds