Wall clock time and date at job start Sun Mar 29 2020 21:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86813 * 119.99723 * 2 1 4 4 H 1.48501 * 109.46995 * 269.99801 * 3 2 1 5 5 H 1.48498 * 109.47138 * 30.00178 * 3 2 1 6 6 H 1.48499 * 109.46779 * 150.00233 * 3 2 1 7 7 C 1.38941 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99975 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00162 * 180.02562 * 7 2 1 10 10 C 1.34784 * 120.00152 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99563 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99927 * 179.97438 * 10 9 7 13 13 C 1.50701 * 109.47031 * 179.97438 * 12 10 9 14 14 C 1.29445 * 117.95895 * 94.73363 * 13 12 10 15 15 C 1.50074 * 124.07477 * 180.75080 * 14 13 12 16 16 C 1.53016 * 110.14671 * 342.87319 * 15 14 13 17 17 C 1.53391 * 108.44058 * 49.43435 * 16 15 14 18 18 C 1.50066 * 117.96583 * 275.00349 * 13 12 10 19 19 H 0.97001 * 120.00007 * 359.97438 * 1 2 3 20 20 H 0.96998 * 120.00301 * 359.97438 * 9 7 2 21 21 H 1.08999 * 109.47012 * 59.99745 * 12 10 9 22 22 H 1.08997 * 109.47081 * 299.99927 * 12 10 9 23 23 H 1.07999 * 117.96176 * 0.73020 * 14 13 12 24 24 H 1.09002 * 109.35609 * 222.66402 * 15 14 13 25 25 H 1.09003 * 109.35439 * 103.08085 * 15 14 13 26 26 H 1.09003 * 109.64533 * 289.75036 * 16 15 14 27 27 H 1.09000 * 109.64519 * 169.11862 * 16 15 14 28 28 H 1.09001 * 109.64689 * 172.88318 * 17 16 15 29 29 H 1.09003 * 109.64136 * 52.25083 * 17 16 15 30 30 H 1.09003 * 109.35468 * 282.79297 * 18 13 12 31 31 H 1.08998 * 109.35916 * 42.51411 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6528 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1385 -0.0005 9 7 3.3798 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4208 0.0000 12 6 5.5608 -2.3703 0.0000 13 6 6.0632 -3.7911 0.0006 14 6 6.3545 -4.3324 -1.1386 15 6 6.8491 -5.7402 -1.2987 16 6 7.3547 -6.2768 0.0421 17 6 6.2856 -6.0047 1.1079 18 6 6.1888 -4.4925 1.3213 19 1 -0.4850 0.8401 0.0004 20 1 3.8648 -0.3632 0.0004 21 1 5.9241 -1.8564 0.8899 22 1 5.9241 -1.8565 -0.8900 23 1 6.2338 -3.7336 -2.0293 24 1 7.6621 -5.7571 -2.0245 25 1 6.0349 -6.3706 -1.6564 26 1 8.2805 -5.7699 0.3141 27 1 7.5301 -7.3498 -0.0353 28 1 6.5683 -6.4892 2.0425 29 1 5.3238 -6.3892 0.7686 30 1 7.0852 -4.1417 1.8329 31 1 5.3140 -4.2712 1.9326 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307467899.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:54 Heat of formation + Delta-G solvation = -42.221492 kcal Electronic energy + Delta-G solvation = -13551.069052 eV Core-core repulsion = 11217.829560 eV Total energy + Delta-G solvation = -2333.239492 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.00033 -37.55927 -33.98531 -32.40207 -31.58032 -30.48796 -27.37712 -24.35060 -22.96233 -21.48045 -19.32507 -18.29639 -17.25000 -15.80072 -15.36469 -14.82825 -14.35490 -14.16694 -13.56265 -13.27407 -12.89062 -12.64819 -12.43163 -12.14916 -11.90380 -11.73386 -11.36700 -11.05364 -10.61547 -10.57574 -10.23124 -9.98403 -9.92694 -9.54157 -8.68482 -8.22943 -8.14940 -6.28788 -3.79940 2.62217 3.04653 3.08719 3.16556 3.79925 4.12350 4.77554 4.92352 4.97022 5.08670 5.24426 5.45106 5.51474 5.62268 5.75067 5.78160 5.86714 5.96566 6.03470 6.08139 6.13065 6.15440 6.35195 6.42506 6.53750 6.99056 7.40534 7.60415 8.17819 8.62790 8.97838 9.45935 9.87346 10.84548 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.063545 B = 0.006965 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.526281 B = 4018.971028 C = 4137.481556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.041 3.959 3 Si 0.879 3.121 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.269 1.269 7 C -0.305 4.305 8 H 0.119 0.881 9 N -0.593 5.593 10 C 0.454 3.546 11 O -0.570 6.570 12 C -0.108 4.108 13 C -0.081 4.081 14 C -0.164 4.164 15 C -0.083 4.083 16 C -0.118 4.118 17 C -0.118 4.118 18 C -0.080 4.080 19 H 0.273 0.727 20 H 0.371 0.629 21 H 0.082 0.918 22 H 0.082 0.918 23 H 0.098 0.902 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.197 -4.994 0.349 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.162 4.162 3 Si 0.706 3.294 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.195 1.195 7 C -0.434 4.434 8 H 0.136 0.864 9 N -0.232 5.232 10 C 0.240 3.760 11 O -0.452 6.452 12 C -0.148 4.148 13 C -0.081 4.081 14 C -0.183 4.183 15 C -0.120 4.120 16 C -0.156 4.156 17 C -0.156 4.156 18 C -0.116 4.116 19 H 0.083 0.917 20 H 0.203 0.797 21 H 0.101 0.899 22 H 0.101 0.899 23 H 0.117 0.883 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.564 -5.574 0.347 15.598 hybrid contribution 0.428 1.584 -0.069 1.643 sum 14.992 -3.990 0.278 15.516 Atomic orbital electron populations 1.69624 1.05643 1.27439 1.49632 1.25037 0.95489 0.97959 0.97714 0.86674 0.79810 0.84055 0.78891 1.19639 1.20187 1.19462 1.19446 0.79397 0.96594 1.47944 0.86364 1.42266 1.07489 1.06251 1.67217 1.19775 0.88207 0.84404 0.83577 1.90558 1.69781 1.30999 1.53897 1.20794 0.95092 0.95784 1.03133 1.20288 0.97841 0.94853 0.95166 1.21730 1.02824 0.96696 0.97006 1.20352 1.00048 0.94409 0.97217 1.21590 0.98489 1.00078 0.95422 1.21573 0.99581 0.96047 0.98351 1.20335 1.01698 0.94485 0.95125 0.91662 0.79675 0.89921 0.89943 0.88347 0.91803 0.91183 0.92101 0.92213 0.92179 0.91355 0.91615 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.18 13.96 55.50 0.77 -25.40 16 2 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 3 Si 0.88 19.69 27.74 -169.99 -4.71 14.97 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 6 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 7 C -0.31 -8.81 10.16 -14.94 -0.15 -8.96 16 8 H 0.12 3.90 7.39 -52.49 -0.39 3.51 16 9 N -0.59 -14.52 5.09 -10.97 -0.06 -14.58 16 10 C 0.45 10.61 7.78 -10.98 -0.09 10.53 16 11 O -0.57 -15.63 15.61 5.55 0.09 -15.55 16 12 C -0.11 -1.86 5.71 -29.04 -0.17 -2.03 16 13 C -0.08 -1.34 4.33 -100.94 -0.44 -1.78 16 14 C -0.16 -2.55 9.37 -35.90 -0.34 -2.88 16 15 C -0.08 -1.07 6.11 -28.18 -0.17 -1.24 16 16 C -0.12 -1.37 6.01 -26.52 -0.16 -1.53 16 17 C -0.12 -1.57 6.01 -26.52 -0.16 -1.73 16 18 C -0.08 -1.19 5.80 -28.18 -0.16 -1.35 16 19 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 20 H 0.37 7.97 5.76 -40.82 -0.24 7.73 16 21 H 0.08 1.24 8.11 -51.93 -0.42 0.82 16 22 H 0.08 1.25 7.80 -51.93 -0.41 0.85 16 23 H 0.10 1.51 7.74 -52.49 -0.41 1.10 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 26 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 27 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 30 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 LS Contribution 260.12 15.07 3.92 3.92 Total: -1.00 -32.26 260.12 -6.32 -38.58 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -4.40 Total: 7.99 kcal Atomic # 6 Polarization: -8.01 SS G_CDS: -1.93 Total: -9.93 kcal Atomic # 7 Polarization: -40.70 SS G_CDS: 0.72 Total: -39.98 kcal Atomic # 8 Polarization: -15.63 SS G_CDS: 0.09 Total: -15.55 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.97 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -32.26 -6.32 -38.58 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307467899.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.641 kcal (2) G-P(sol) polarization free energy of solvation -32.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds