Wall clock time and date at job start Sun Mar 29 2020 21:34:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86813 * 119.99723 * 2 1 4 4 H 1.48501 * 109.46995 * 269.99801 * 3 2 1 5 5 H 1.48498 * 109.47138 * 30.00178 * 3 2 1 6 6 H 1.48499 * 109.46779 * 150.00233 * 3 2 1 7 7 C 1.38941 * 120.00308 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99975 * 359.97438 * 7 2 1 9 9 N 1.37096 * 120.00162 * 180.02562 * 7 2 1 10 10 C 1.34784 * 120.00152 * 179.97438 * 9 7 2 11 11 O 1.21287 * 119.99563 * 359.97438 * 10 9 7 12 12 C 1.50698 * 119.99927 * 179.97438 * 10 9 7 13 13 C 1.50701 * 109.47031 * 179.97438 * 12 10 9 14 14 C 1.29445 * 117.95895 * 94.73363 * 13 12 10 15 15 C 1.50074 * 124.07477 * 180.75080 * 14 13 12 16 16 C 1.53016 * 110.14671 * 342.87319 * 15 14 13 17 17 C 1.53391 * 108.44058 * 49.43435 * 16 15 14 18 18 C 1.50066 * 117.96583 * 275.00349 * 13 12 10 19 19 H 0.97001 * 120.00007 * 359.97438 * 1 2 3 20 20 H 0.96998 * 120.00301 * 359.97438 * 9 7 2 21 21 H 1.08999 * 109.47012 * 59.99745 * 12 10 9 22 22 H 1.08997 * 109.47081 * 299.99927 * 12 10 9 23 23 H 1.07999 * 117.96176 * 0.73020 * 14 13 12 24 24 H 1.09002 * 109.35609 * 222.66402 * 15 14 13 25 25 H 1.09003 * 109.35439 * 103.08085 * 15 14 13 26 26 H 1.09003 * 109.64533 * 289.75036 * 16 15 14 27 27 H 1.09000 * 109.64519 * 169.11862 * 16 15 14 28 28 H 1.09001 * 109.64689 * 172.88318 * 17 16 15 29 29 H 1.09003 * 109.64136 * 52.25083 * 17 16 15 30 30 H 1.09003 * 109.35468 * 282.79297 * 18 13 12 31 31 H 1.08998 * 109.35916 * 42.51411 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6179 0.0000 4 1 2.4956 2.0465 -1.4001 5 1 1.4455 2.6528 0.7001 6 1 3.5457 1.4403 0.7000 7 6 2.0089 -1.2032 -0.0005 8 1 1.4690 -2.1385 -0.0005 9 7 3.3798 -1.2032 0.0000 10 6 4.0538 -2.3704 0.0000 11 8 3.4474 -3.4208 0.0000 12 6 5.5608 -2.3703 0.0000 13 6 6.0632 -3.7911 0.0006 14 6 6.3545 -4.3324 -1.1386 15 6 6.8491 -5.7402 -1.2987 16 6 7.3547 -6.2768 0.0421 17 6 6.2856 -6.0047 1.1079 18 6 6.1888 -4.4925 1.3213 19 1 -0.4850 0.8401 0.0004 20 1 3.8648 -0.3632 0.0004 21 1 5.9241 -1.8564 0.8899 22 1 5.9241 -1.8565 -0.8900 23 1 6.2338 -3.7336 -2.0293 24 1 7.6621 -5.7571 -2.0245 25 1 6.0349 -6.3706 -1.6564 26 1 8.2805 -5.7699 0.3141 27 1 7.5301 -7.3498 -0.0353 28 1 6.5683 -6.4892 2.0425 29 1 5.3238 -6.3892 0.7686 30 1 7.0852 -4.1417 1.8329 31 1 5.3140 -4.2712 1.9326 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307467899.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:54 Heat of formation + Delta-G solvation = -64.055471 kcal Electronic energy + Delta-G solvation = -13552.015844 eV Core-core repulsion = 11217.829560 eV Total energy + Delta-G solvation = -2334.186284 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.60820 -39.00155 -36.03086 -33.89512 -33.50198 -31.57918 -28.88071 -26.24639 -24.08548 -22.64626 -21.26802 -20.26196 -18.41359 -17.64681 -16.88477 -16.43489 -15.96906 -15.47475 -15.00693 -14.64305 -14.45506 -14.33396 -14.16158 -13.41818 -13.05509 -13.03578 -12.91288 -12.49883 -12.42517 -11.99973 -11.62677 -11.53004 -11.28213 -11.03352 -10.52429 -10.26534 -9.57029 -8.43277 -6.04332 1.28744 1.34006 1.36613 1.43736 1.95308 2.21506 3.07544 3.13601 3.75370 3.86079 4.09588 4.26199 4.36783 4.44973 4.51713 4.62926 4.73094 4.79940 4.81331 5.02969 5.07509 5.12764 5.23907 5.36176 5.49994 5.53911 5.80663 5.94175 6.19927 6.57073 6.85990 7.38077 7.95412 8.74603 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.063545 B = 0.006965 C = 0.006766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 440.526281 B = 4018.971028 C = 4137.481556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.965 3.035 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.232 1.232 7 C -0.331 4.331 8 H 0.053 0.947 9 N -0.593 5.593 10 C 0.452 3.548 11 O -0.619 6.619 12 C -0.097 4.097 13 C -0.108 4.108 14 C -0.163 4.163 15 C -0.087 4.087 16 C -0.112 4.112 17 C -0.120 4.120 18 C -0.080 4.080 19 H 0.279 0.721 20 H 0.390 0.610 21 H 0.113 0.887 22 H 0.111 0.889 23 H 0.097 0.903 24 H 0.089 0.911 25 H 0.061 0.939 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.093 0.907 31 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.677 -3.644 0.308 19.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.214 4.214 3 Si 0.785 3.215 4 H -0.181 1.181 5 H -0.198 1.198 6 H -0.155 1.155 7 C -0.461 4.461 8 H 0.071 0.929 9 N -0.234 5.234 10 C 0.240 3.760 11 O -0.504 6.504 12 C -0.137 4.137 13 C -0.108 4.108 14 C -0.181 4.181 15 C -0.124 4.124 16 C -0.149 4.149 17 C -0.157 4.157 18 C -0.117 4.117 19 H 0.089 0.911 20 H 0.226 0.774 21 H 0.131 0.869 22 H 0.129 0.871 23 H 0.116 0.884 24 H 0.107 0.893 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.112 0.888 31 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 18.071 -4.233 0.307 18.562 hybrid contribution -0.730 1.029 -0.087 1.265 sum 17.340 -3.205 0.220 17.635 Atomic orbital electron populations 1.69807 1.08149 1.29285 1.50318 1.26131 0.96489 1.02742 0.95997 0.85362 0.79492 0.76653 0.80009 1.18082 1.19818 1.15494 1.19027 0.81628 0.94915 1.50484 0.92854 1.42107 1.05793 1.07677 1.67862 1.21039 0.90944 0.83172 0.80805 1.90536 1.71705 1.32855 1.55348 1.20808 0.89512 0.97429 1.05916 1.20477 0.99187 0.94906 0.96270 1.22062 1.01519 0.97950 0.96594 1.20451 1.00586 0.92568 0.98816 1.21581 0.98123 1.01498 0.93710 1.21588 0.98981 0.95040 1.00099 1.20364 1.01523 0.95608 0.94242 0.91103 0.77448 0.86921 0.87081 0.88445 0.89265 0.92099 0.90505 0.90243 0.90116 0.94276 0.88848 0.93660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.27 13.96 21.66 0.30 -56.97 16 2 C -0.02 -0.85 5.50 84.92 0.47 -0.39 16 3 Si 0.97 39.47 27.74 68.60 1.90 41.37 16 4 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 6 H -0.23 -8.01 6.52 99.48 0.65 -7.37 16 7 C -0.33 -19.94 10.16 84.04 0.85 -19.09 16 8 H 0.05 3.82 7.39 -2.91 -0.02 3.79 16 9 N -0.59 -28.96 5.09 -306.99 -1.56 -30.53 16 10 C 0.45 21.23 7.78 87.66 0.68 21.91 16 11 O -0.62 -35.52 15.61 -3.05 -0.05 -35.57 16 12 C -0.10 -3.13 5.71 29.10 0.17 -2.96 16 13 C -0.11 -3.39 4.33 -15.10 -0.07 -3.46 16 14 C -0.16 -4.76 9.37 27.04 0.25 -4.51 16 15 C -0.09 -2.04 6.11 29.66 0.18 -1.86 16 16 C -0.11 -2.27 6.01 30.73 0.18 -2.08 16 17 C -0.12 -3.02 6.01 30.73 0.18 -2.84 16 18 C -0.08 -2.30 5.80 29.66 0.17 -2.13 16 19 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 20 H 0.39 15.76 5.76 -92.71 -0.53 15.23 16 21 H 0.11 2.99 8.11 -2.39 -0.02 2.97 16 22 H 0.11 2.97 7.80 -2.39 -0.02 2.95 16 23 H 0.10 2.80 7.74 -2.91 -0.02 2.78 16 24 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.08 1.35 8.12 -2.39 -0.02 1.33 16 27 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.19 8.12 -2.39 -0.02 1.17 16 30 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -75.42 260.12 4.19 -71.23 By element: Atomic # 1 Polarization: 27.34 SS G_CDS: 0.52 Total: 27.87 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: 3.08 Total: -17.40 kcal Atomic # 7 Polarization: -86.24 SS G_CDS: -1.26 Total: -87.50 kcal Atomic # 8 Polarization: -35.52 SS G_CDS: -0.05 Total: -35.57 kcal Atomic # 14 Polarization: 39.47 SS G_CDS: 1.90 Total: 41.37 kcal Total: -75.42 4.19 -71.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307467899.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.173 kcal (2) G-P(sol) polarization free energy of solvation -75.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds