Wall clock time and date at job start Sun Mar 29 2020 21:34:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86802 * 119.99714 * 2 1 4 4 H 1.48499 * 109.46841 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47283 * 300.00387 * 3 2 1 6 6 H 1.48498 * 109.47056 * 60.00487 * 3 2 1 7 7 C 1.38945 * 119.99714 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99734 * 179.97438 * 7 2 1 9 9 N 1.37096 * 120.00440 * 0.02562 * 7 2 1 10 10 C 1.34779 * 119.99938 * 179.72086 * 9 7 2 11 11 O 1.21296 * 120.00170 * 0.27406 * 10 9 7 12 12 C 1.50703 * 119.99792 * 180.26903 * 10 9 7 13 13 H 1.09000 * 115.55149 * 61.43245 * 12 10 9 14 14 C 1.53091 * 117.51021 * 207.14668 * 12 10 9 15 15 C 1.52549 * 117.51092 * 275.71209 * 12 10 9 16 16 C 1.53870 * 120.82290 * 142.33723 * 15 12 10 17 17 C 1.54991 * 104.06319 * 192.36543 * 16 15 12 18 18 C 1.54919 * 102.82312 * 37.56084 * 17 16 15 19 19 C 1.53481 * 121.09204 * 2.96620 * 15 12 10 20 20 H 0.97006 * 120.00109 * 359.97438 * 1 2 3 21 21 H 0.96993 * 120.00032 * 359.97438 * 9 7 2 22 22 H 1.09001 * 117.51101 * 214.91607 * 14 12 10 23 23 H 1.08995 * 117.50818 * 0.02562 * 14 12 10 24 24 H 1.09002 * 110.51096 * 311.00912 * 16 15 12 25 25 H 1.09004 * 110.51483 * 73.71987 * 16 15 12 26 26 H 1.09008 * 110.74057 * 279.22882 * 17 16 15 27 27 H 1.09000 * 110.90060 * 155.97456 * 17 16 15 28 28 H 1.08991 * 110.48350 * 203.59506 * 18 17 16 29 29 H 1.09000 * 110.47815 * 80.96626 * 18 17 16 30 30 H 1.09001 * 110.06702 * 263.30676 * 19 15 12 31 31 H 1.08997 * 110.06535 * 24.77588 * 19 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8892 2.3965 -1.2124 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0010 9 7 1.3234 -2.3906 -0.0016 10 6 1.9973 -3.5578 -0.0078 11 8 3.2102 -3.5578 -0.0074 12 6 1.2438 -4.8629 -0.0151 13 1 0.6016 -5.0302 -0.8799 14 6 1.9364 -6.0828 0.5979 15 6 0.7745 -5.4132 1.3281 16 6 -0.5859 -6.1203 1.4586 17 6 -0.8104 -6.2254 2.9885 18 6 -0.2375 -4.8851 3.5130 19 6 1.0017 -4.6301 2.6284 20 1 -0.4850 0.8401 0.0004 21 1 0.3534 -2.3907 -0.0016 22 1 1.7493 -7.0526 0.1369 23 1 2.9368 -5.9411 1.0068 24 1 -1.3725 -5.5232 0.9972 25 1 -0.5452 -7.1126 1.0094 26 1 -0.2587 -7.0695 3.4025 27 1 -1.8721 -6.3089 3.2208 28 1 0.0533 -4.9780 4.5593 29 1 -0.9663 -4.0841 3.3885 30 1 1.8999 -4.9906 3.1300 31 1 1.0959 -3.5659 2.4125 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307577807.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:36 Heat of formation + Delta-G solvation = -53.817994 kcal Electronic energy + Delta-G solvation = -13825.568776 eV Core-core repulsion = 11491.826422 eV Total energy + Delta-G solvation = -2333.742354 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.94920 -38.92898 -36.06901 -34.87403 -33.24060 -29.62962 -27.66003 -26.38513 -24.34833 -21.73538 -20.85164 -20.07024 -19.39275 -17.67203 -16.76660 -16.63080 -16.14030 -15.81265 -14.95315 -14.84833 -14.18692 -13.86726 -13.52542 -13.24101 -12.99172 -12.91503 -12.45918 -12.15820 -11.96719 -11.95222 -11.80233 -11.58117 -11.39474 -11.10190 -10.71339 -10.26353 -10.05576 -8.50418 -5.99884 1.32932 1.38458 1.53168 1.93843 2.26453 2.75473 3.09732 3.23596 3.64205 3.75591 3.96405 3.98690 4.27924 4.37461 4.53400 4.58096 4.78792 4.82669 4.91680 4.93775 5.06507 5.11973 5.17820 5.25122 5.31873 5.36784 5.43580 5.51962 5.96020 6.54591 7.07424 7.51974 8.07591 8.67106 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.039956 B = 0.008794 C = 0.007920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.595645 B = 3183.152663 C = 3534.477183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.011 4.011 3 Si 0.994 3.006 4 H -0.274 1.274 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.339 4.339 8 H 0.077 0.923 9 N -0.561 5.561 10 C 0.467 3.533 11 O -0.641 6.641 12 C -0.182 4.182 13 H 0.134 0.866 14 C -0.129 4.129 15 C -0.101 4.101 16 C -0.084 4.084 17 C -0.111 4.111 18 C -0.119 4.119 19 C -0.101 4.101 20 H 0.279 0.721 21 H 0.396 0.604 22 H 0.132 0.868 23 H 0.077 0.923 24 H 0.071 0.929 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.291 -10.525 4.658 12.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.211 4.211 3 Si 0.817 3.183 4 H -0.199 1.199 5 H -0.193 1.193 6 H -0.194 1.194 7 C -0.468 4.468 8 H 0.095 0.905 9 N -0.196 5.196 10 C 0.255 3.745 11 O -0.530 6.530 12 C -0.203 4.203 13 H 0.151 0.849 14 C -0.166 4.166 15 C -0.101 4.101 16 C -0.121 4.121 17 C -0.149 4.149 18 C -0.156 4.156 19 C -0.139 4.139 20 H 0.088 0.912 21 H 0.229 0.771 22 H 0.150 0.850 23 H 0.096 0.904 24 H 0.090 0.910 25 H 0.108 0.892 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.646 -10.341 4.661 12.258 hybrid contribution 0.246 1.267 -0.273 1.319 sum -4.400 -9.075 4.388 10.998 Atomic orbital electron populations 1.69690 1.06840 1.29342 1.49821 1.26072 0.96576 1.02421 0.96001 0.84868 0.77966 0.76936 0.78540 1.19888 1.19288 1.19355 1.19727 0.92636 0.84120 1.50327 0.90548 1.41894 1.09217 1.04544 1.63932 1.19962 0.87285 0.85454 0.81752 1.90458 1.16197 1.88201 1.58128 1.22192 1.05195 0.92817 1.00117 0.84871 1.23043 0.96305 0.95622 1.01612 1.21966 0.97339 1.00356 0.90477 1.21970 0.92392 1.00176 0.97607 1.22455 1.01673 0.96579 0.94151 1.22331 0.95789 0.98594 0.98914 1.21709 0.99367 0.98235 0.94566 0.91164 0.77065 0.84989 0.90440 0.91035 0.89177 0.90241 0.89583 0.90520 0.92274 0.92243 0.94864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.52 13.05 21.66 0.28 -50.23 16 2 C -0.01 -0.58 5.50 84.92 0.47 -0.11 16 3 Si 0.99 43.85 29.55 68.60 2.03 45.87 16 4 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 5 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 6 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 7 C -0.34 -20.03 9.68 84.04 0.81 -19.22 16 8 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 9 N -0.56 -30.56 5.18 -306.97 -1.59 -32.15 16 10 C 0.47 24.06 6.24 87.66 0.55 24.61 16 11 O -0.64 -38.26 16.18 -3.08 -0.05 -38.31 16 12 C -0.18 -6.93 6.03 -11.66 -0.07 -7.00 16 13 H 0.13 4.44 8.14 -2.39 -0.02 4.42 16 14 C -0.13 -4.10 9.76 30.52 0.30 -3.80 16 15 C -0.10 -3.16 2.45 -51.98 -0.13 -3.29 16 16 C -0.08 -1.93 6.58 31.57 0.21 -1.72 16 17 C -0.11 -2.24 6.91 31.93 0.22 -2.02 16 18 C -0.12 -3.10 6.84 31.72 0.22 -2.88 16 19 C -0.10 -3.47 6.19 31.23 0.19 -3.28 16 20 H 0.28 14.25 8.31 -92.70 -0.77 13.48 16 21 H 0.40 20.75 7.90 -92.71 -0.73 20.01 16 22 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 23 H 0.08 2.83 7.93 -2.39 -0.02 2.81 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.09 1.64 8.11 -2.38 -0.02 1.62 16 26 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 27 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.03 1.42 7.16 -2.39 -0.02 1.40 16 Total: -1.00 -68.55 263.15 3.82 -64.73 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.39 Total: 28.80 kcal Atomic # 6 Polarization: -21.48 SS G_CDS: 2.77 Total: -18.71 kcal Atomic # 7 Polarization: -81.08 SS G_CDS: -1.31 Total: -82.39 kcal Atomic # 8 Polarization: -38.26 SS G_CDS: -0.05 Total: -38.31 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.87 kcal Total: -68.55 3.82 -64.73 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307577807.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.908 kcal (2) G-P(sol) polarization free energy of solvation -68.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds