Wall clock time and date at job start Sun Mar 29 2020 21:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.46655 * 2 1 4 4 C 1.50701 * 109.46987 * 120.00071 * 2 1 3 5 5 C 1.39866 * 126.03801 * 80.02799 * 4 2 1 6 6 N 1.30841 * 108.20425 * 179.97438 * 5 4 2 7 7 N 1.40081 * 108.20027 * 359.97438 * 6 5 4 8 8 C 1.46504 * 126.03541 * 180.02562 * 7 6 5 9 9 C 1.34950 * 107.92953 * 359.75938 * 7 6 5 10 10 N 1.46503 * 109.47162 * 240.00226 * 2 1 3 11 11 C 1.46496 * 119.99998 * 300.00147 * 10 2 1 12 12 C 1.36936 * 119.99797 * 119.99877 * 10 2 1 13 13 H 1.07994 * 120.00090 * 334.84344 * 12 10 2 14 14 C 1.38818 * 119.99692 * 154.84331 * 12 10 2 15 15 N 1.31618 * 119.99903 * 4.57128 * 14 12 10 16 16 Si 1.86800 * 119.99547 * 184.56862 * 14 12 10 17 17 H 1.48496 * 109.47372 * 90.00305 * 16 14 12 18 18 H 1.48506 * 109.46573 * 209.99724 * 16 14 12 19 19 H 1.48498 * 109.47266 * 329.99623 * 16 14 12 20 20 H 1.08996 * 109.47174 * 300.00005 * 1 2 3 21 21 H 1.08996 * 109.46674 * 59.99844 * 1 2 3 22 22 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 23 23 H 1.08000 * 125.90176 * 359.97438 * 5 4 2 24 24 H 1.08996 * 109.47261 * 89.97280 * 8 7 6 25 25 H 1.09006 * 109.46847 * 209.97468 * 8 7 6 26 26 H 1.09003 * 109.46638 * 329.96519 * 8 7 6 27 27 H 1.08001 * 126.13044 * 180.24235 * 9 7 6 28 28 H 1.08996 * 109.46913 * 264.53733 * 11 10 2 29 29 H 1.09003 * 109.47079 * 144.53357 * 11 10 2 30 30 H 1.09004 * 109.47159 * 24.53269 * 11 10 2 31 31 H 0.96996 * 119.99876 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1220 -2.0957 1.4019 6 7 2.6031 -2.3295 2.5960 7 7 2.8357 -1.0985 3.2227 8 6 3.3732 -0.9063 4.5720 9 6 2.4828 -0.1208 2.3620 10 7 2.0185 -0.6906 -1.1962 11 6 1.6645 -2.0931 -1.4281 12 6 2.8057 -0.0250 -2.0975 13 1 2.7466 1.0505 -2.1753 14 6 3.6797 -0.7328 -2.9113 15 7 3.6876 -2.0486 -2.8809 16 14 4.8443 0.1823 -4.0495 17 1 6.1195 0.4540 -3.3387 18 1 5.1147 -0.6468 -5.2516 19 1 4.2247 1.4668 -4.4633 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8424 -2.8432 0.6743 24 1 4.4604 -0.8448 4.5247 25 1 2.9750 0.0168 4.9936 26 1 3.0837 -1.7477 5.2016 27 1 2.5457 0.9418 2.5448 28 1 2.4633 -2.7354 -1.0574 29 1 1.5288 -2.2617 -2.4964 30 1 0.7381 -2.3257 -0.9030 31 1 4.2985 -2.5432 -3.4492 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307621360.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:15 Heat of formation + Delta-G solvation = 110.059361 kcal Electronic energy + Delta-G solvation = -13994.068087 eV Core-core repulsion = 11699.724740 eV Total energy + Delta-G solvation = -2294.343348 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.55614 -36.09882 -32.87932 -31.89824 -29.70196 -28.22065 -26.36053 -25.75677 -23.37658 -20.84061 -20.37445 -18.92461 -16.71834 -16.08354 -14.98758 -14.84828 -13.95452 -13.77097 -13.37812 -12.92784 -12.50977 -12.33199 -12.15201 -11.86866 -11.55923 -10.97512 -10.78623 -10.64947 -10.58392 -10.17441 -9.91918 -9.75664 -9.63964 -8.78716 -8.40855 -7.66653 -6.63243 -5.64113 -3.08768 2.47043 3.05703 3.42806 3.48942 3.50082 3.57287 4.56287 4.87707 5.29952 5.33911 5.50481 5.51887 5.64312 5.73907 6.06881 6.25089 6.30608 6.41695 6.44589 6.69172 6.90524 7.00358 7.11085 7.36424 7.58497 7.60891 7.84874 7.94886 8.33114 8.52977 9.36190 9.98449 10.49123 11.40373 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.009454 C = 0.008906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.073265 B = 2961.132360 C = 3143.288118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.240 3.760 3 H 0.064 0.936 4 C -0.214 4.214 5 C 0.066 3.934 6 N -0.316 5.316 7 N -0.392 5.392 8 C 0.109 3.891 9 C 0.032 3.968 10 N -0.594 5.594 11 C 0.163 3.837 12 C -0.250 4.250 13 H 0.068 0.932 14 C 0.004 3.996 15 N -0.908 5.908 16 Si 0.901 3.099 17 H -0.289 1.289 18 H -0.292 1.292 19 H -0.280 1.280 20 H 0.040 0.960 21 H 0.051 0.949 22 H 0.049 0.951 23 H 0.186 0.814 24 H 0.065 0.935 25 H 0.079 0.921 26 H 0.081 0.919 27 H 0.164 0.836 28 H 0.026 0.974 29 H 0.052 0.948 30 H -0.005 1.005 31 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.409 3.583 10.712 11.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.130 3.870 3 H 0.083 0.917 4 C -0.227 4.227 5 C -0.120 4.120 6 N -0.138 5.138 7 N -0.176 5.176 8 C -0.033 4.033 9 C -0.113 4.113 10 N -0.315 5.315 11 C 0.019 3.981 12 C -0.380 4.380 13 H 0.086 0.914 14 C -0.194 4.194 15 N -0.554 5.554 16 Si 0.731 3.269 17 H -0.216 1.216 18 H -0.218 1.218 19 H -0.206 1.206 20 H 0.059 0.941 21 H 0.070 0.930 22 H 0.068 0.932 23 H 0.203 0.797 24 H 0.084 0.916 25 H 0.098 0.902 26 H 0.100 0.900 27 H 0.181 0.819 28 H 0.044 0.956 29 H 0.070 0.930 30 H 0.014 0.986 31 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.904 2.592 11.564 12.202 hybrid contribution 0.726 1.046 -1.137 1.707 sum -2.178 3.638 10.427 11.256 Atomic orbital electron populations 1.22227 0.98122 1.01088 0.99834 1.18700 0.91227 0.94314 0.82714 0.91731 1.21238 1.09863 0.93940 0.97678 1.24159 0.97407 0.97004 0.93454 1.77247 1.23499 1.03290 1.09748 1.48332 1.51890 1.04257 1.13112 1.21645 0.98944 1.02731 0.79968 1.22191 1.02818 0.94791 0.91456 1.43916 1.58463 1.09765 1.19394 1.20970 0.93260 0.84507 0.99381 1.19235 1.14096 0.91415 1.13250 0.91400 1.25155 0.98074 0.95600 1.00532 1.70081 1.38924 1.04716 1.41636 0.86300 0.81699 0.78931 0.79930 1.21609 1.21796 1.20582 0.94072 0.92955 0.93214 0.79739 0.91628 0.90234 0.90045 0.81860 0.95580 0.92965 0.98624 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.17 37.16 0.34 -2.42 16 2 C 0.24 5.04 3.18 -69.07 -0.22 4.82 16 3 H 0.06 1.33 7.87 -51.93 -0.41 0.93 16 4 C -0.21 -4.32 5.09 -105.06 -0.53 -4.85 16 5 C 0.07 1.38 10.67 -17.36 -0.19 1.19 16 6 N -0.32 -6.39 12.58 30.62 0.39 -6.01 16 7 N -0.39 -6.66 4.01 -68.16 -0.27 -6.93 16 8 C 0.11 1.23 11.47 59.85 0.69 1.91 16 9 C 0.03 0.55 11.40 -17.22 -0.20 0.36 16 10 N -0.59 -15.03 2.81 -174.80 -0.49 -15.53 16 11 C 0.16 4.06 6.67 59.84 0.40 4.46 16 12 C -0.25 -6.95 9.59 -15.06 -0.14 -7.09 16 13 H 0.07 1.83 7.81 -52.49 -0.41 1.42 16 14 C 0.00 0.12 5.39 -17.43 -0.09 0.02 16 15 N -0.91 -26.79 10.10 55.49 0.56 -26.23 16 16 Si 0.90 22.17 29.56 -169.99 -5.02 17.14 16 17 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 18 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 21 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 22 H 0.05 0.91 6.67 -51.93 -0.35 0.56 16 23 H 0.19 3.90 5.11 -52.49 -0.27 3.64 16 24 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.16 2.20 8.06 -52.49 -0.42 1.78 16 28 H 0.03 0.70 6.25 -51.93 -0.32 0.38 16 29 H 0.05 1.42 7.00 -51.93 -0.36 1.06 16 30 H 0.00 -0.10 5.83 -51.93 -0.30 -0.40 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 256.60 15.07 3.87 3.87 Total: -1.00 -32.29 256.60 -5.02 -37.31 By element: Atomic # 1 Polarization: 2.08 SS G_CDS: -4.09 Total: -2.01 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: 0.05 Total: -1.61 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: 0.18 Total: -54.70 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -32.29 -5.02 -37.31 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307621360.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.367 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 110.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds