Wall clock time and date at job start Sun Mar 29 2020 21:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 H 1.09001 * 109.46655 * 2 1 4 4 C 1.50701 * 109.46987 * 120.00071 * 2 1 3 5 5 C 1.39866 * 126.03801 * 80.02799 * 4 2 1 6 6 N 1.30841 * 108.20425 * 179.97438 * 5 4 2 7 7 N 1.40081 * 108.20027 * 359.97438 * 6 5 4 8 8 C 1.46504 * 126.03541 * 180.02562 * 7 6 5 9 9 C 1.34950 * 107.92953 * 359.75938 * 7 6 5 10 10 N 1.46503 * 109.47162 * 240.00226 * 2 1 3 11 11 C 1.46496 * 119.99998 * 300.00147 * 10 2 1 12 12 C 1.36936 * 119.99797 * 119.99877 * 10 2 1 13 13 H 1.07994 * 120.00090 * 334.84344 * 12 10 2 14 14 C 1.38818 * 119.99692 * 154.84331 * 12 10 2 15 15 N 1.31618 * 119.99903 * 4.57128 * 14 12 10 16 16 Si 1.86800 * 119.99547 * 184.56862 * 14 12 10 17 17 H 1.48496 * 109.47372 * 90.00305 * 16 14 12 18 18 H 1.48506 * 109.46573 * 209.99724 * 16 14 12 19 19 H 1.48498 * 109.47266 * 329.99623 * 16 14 12 20 20 H 1.08996 * 109.47174 * 300.00005 * 1 2 3 21 21 H 1.08996 * 109.46674 * 59.99844 * 1 2 3 22 22 H 1.09001 * 109.46979 * 179.97438 * 1 2 3 23 23 H 1.08000 * 125.90176 * 359.97438 * 5 4 2 24 24 H 1.08996 * 109.47261 * 89.97280 * 8 7 6 25 25 H 1.09006 * 109.46847 * 209.97468 * 8 7 6 26 26 H 1.09003 * 109.46638 * 329.96519 * 8 7 6 27 27 H 1.08001 * 126.13044 * 180.24235 * 9 7 6 28 28 H 1.08996 * 109.46913 * 264.53733 * 11 10 2 29 29 H 1.09003 * 109.47079 * 144.53357 * 11 10 2 30 30 H 1.09004 * 109.47159 * 24.53269 * 11 10 2 31 31 H 0.96996 * 119.99876 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 6 2.1220 -2.0957 1.4019 6 7 2.6031 -2.3295 2.5960 7 7 2.8357 -1.0985 3.2227 8 6 3.3732 -0.9063 4.5720 9 6 2.4828 -0.1208 2.3620 10 7 2.0185 -0.6906 -1.1962 11 6 1.6645 -2.0931 -1.4281 12 6 2.8057 -0.0250 -2.0975 13 1 2.7466 1.0505 -2.1753 14 6 3.6797 -0.7328 -2.9113 15 7 3.6876 -2.0486 -2.8809 16 14 4.8443 0.1823 -4.0495 17 1 6.1195 0.4540 -3.3387 18 1 5.1147 -0.6468 -5.2516 19 1 4.2247 1.4668 -4.4633 20 1 -0.3633 0.5138 0.8899 21 1 -0.3632 0.5139 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8424 -2.8432 0.6743 24 1 4.4604 -0.8448 4.5247 25 1 2.9750 0.0168 4.9936 26 1 3.0837 -1.7477 5.2016 27 1 2.5457 0.9418 2.5448 28 1 2.4633 -2.7354 -1.0574 29 1 1.5288 -2.2617 -2.4964 30 1 0.7381 -2.3257 -0.9030 31 1 4.2985 -2.5432 -3.4492 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307621360.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:15 Heat of formation + Delta-G solvation = 88.890981 kcal Electronic energy + Delta-G solvation = -13994.986017 eV Core-core repulsion = 11699.724740 eV Total energy + Delta-G solvation = -2295.261277 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.98052 -37.89690 -34.52184 -33.44316 -31.47574 -29.72384 -28.19114 -27.16344 -25.22221 -22.50657 -21.77653 -20.47765 -18.72967 -17.53502 -16.74474 -16.20747 -15.64681 -15.41181 -14.98967 -14.44677 -14.16728 -13.67660 -13.39893 -13.30942 -13.22104 -12.76014 -12.58352 -12.47664 -12.24764 -12.12723 -11.78737 -11.71007 -11.19825 -10.53791 -10.17870 -9.10451 -8.66856 -7.75872 -5.22176 1.08127 1.48059 1.49401 1.57911 1.86722 2.02543 2.55344 3.38892 3.74391 3.90840 4.16294 4.41644 4.49240 4.55618 4.68222 4.71657 4.79502 4.89348 5.02008 5.04952 5.30482 5.41361 5.48041 5.62802 5.71221 5.85695 5.86830 6.33916 6.44098 6.87503 7.25414 7.99086 8.44390 9.27354 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.036927 B = 0.009454 C = 0.008906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.073265 B = 2961.132360 C = 3143.288118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.237 3.763 3 H 0.068 0.932 4 C -0.247 4.247 5 C 0.044 3.956 6 N -0.343 5.343 7 N -0.384 5.384 8 C 0.097 3.903 9 C 0.053 3.947 10 N -0.609 5.609 11 C 0.186 3.814 12 C -0.257 4.257 13 H 0.075 0.925 14 C -0.055 4.055 15 N -0.940 5.940 16 Si 0.966 3.034 17 H -0.290 1.290 18 H -0.297 1.297 19 H -0.265 1.265 20 H 0.071 0.929 21 H 0.047 0.953 22 H 0.041 0.959 23 H 0.169 0.831 24 H 0.077 0.923 25 H 0.119 0.881 26 H 0.089 0.911 27 H 0.208 0.792 28 H -0.001 1.001 29 H 0.019 0.981 30 H 0.021 0.979 31 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.406 5.731 12.463 14.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.130 3.870 3 H 0.087 0.913 4 C -0.260 4.260 5 C -0.141 4.141 6 N -0.166 5.166 7 N -0.168 5.168 8 C -0.043 4.043 9 C -0.094 4.094 10 N -0.332 5.332 11 C 0.041 3.959 12 C -0.387 4.387 13 H 0.093 0.907 14 C -0.249 4.249 15 N -0.588 5.588 16 Si 0.795 3.205 17 H -0.218 1.218 18 H -0.224 1.224 19 H -0.190 1.190 20 H 0.090 0.910 21 H 0.066 0.934 22 H 0.060 0.940 23 H 0.186 0.814 24 H 0.095 0.905 25 H 0.138 0.862 26 H 0.108 0.892 27 H 0.225 0.775 28 H 0.017 0.983 29 H 0.038 0.962 30 H 0.040 0.960 31 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.918 4.756 13.360 14.478 hybrid contribution 0.703 0.429 -1.515 1.725 sum -2.215 5.186 11.845 13.118 Atomic orbital electron populations 1.22084 0.95897 1.00956 1.01118 1.18852 0.92723 0.93933 0.81528 0.91350 1.21142 1.12474 0.93642 0.98782 1.24009 0.98734 0.97457 0.93878 1.77165 1.24291 1.05430 1.09740 1.48780 1.50231 1.03162 1.14601 1.22139 0.99765 1.05133 0.77280 1.22742 0.99937 0.96544 0.90165 1.44143 1.58476 1.09639 1.20949 1.20589 0.93439 0.84628 0.97256 1.19632 1.13718 0.91908 1.13425 0.90681 1.25907 0.99926 0.96359 1.02747 1.70283 1.39657 1.06067 1.42757 0.85274 0.79407 0.78132 0.77717 1.21761 1.22414 1.19000 0.91005 0.93350 0.94029 0.81417 0.90479 0.86248 0.89237 0.77538 0.98274 0.96187 0.96031 0.94649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.84 9.17 71.99 0.66 -4.18 16 2 C 0.24 9.66 3.18 44.25 0.14 9.80 16 3 H 0.07 2.68 7.87 -2.39 -0.02 2.66 16 4 C -0.25 -9.63 5.09 -20.15 -0.10 -9.73 16 5 C 0.04 1.85 10.67 85.23 0.91 2.75 16 6 N -0.34 -13.62 12.58 -57.02 -0.72 -14.34 16 7 N -0.38 -11.94 4.01 -369.55 -1.48 -13.43 16 8 C 0.10 1.78 11.47 127.77 1.47 3.24 16 9 C 0.05 1.64 11.40 83.54 0.95 2.59 16 10 N -0.61 -31.03 2.81 -706.96 -1.98 -33.01 16 11 C 0.19 9.55 6.67 127.77 0.85 10.40 16 12 C -0.26 -14.25 9.59 84.04 0.81 -13.44 16 13 H 0.08 3.97 7.81 -2.91 -0.02 3.95 16 14 C -0.06 -3.16 5.39 84.86 0.46 -2.70 16 15 N -0.94 -57.19 10.10 21.65 0.22 -56.98 16 16 Si 0.97 45.96 29.56 68.60 2.03 47.99 16 17 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 18 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 19 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 20 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 21 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 22 H 0.04 1.47 6.67 -2.39 -0.02 1.45 16 23 H 0.17 7.43 5.11 -2.91 -0.01 7.42 16 24 H 0.08 1.30 8.14 -2.39 -0.02 1.29 16 25 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 26 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.21 4.45 8.06 -2.91 -0.02 4.42 16 28 H 0.00 -0.05 6.25 -2.39 -0.01 -0.07 16 29 H 0.02 1.11 7.00 -2.39 -0.02 1.10 16 30 H 0.02 0.97 5.83 -2.38 -0.01 0.95 16 31 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -70.77 256.60 5.31 -65.46 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.11 Total: 5.57 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: 6.14 Total: -1.26 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -3.97 Total: -117.75 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -70.77 5.31 -65.46 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307621360.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.348 kcal (2) G-P(sol) polarization free energy of solvation -70.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds