Wall clock time and date at job start Sun Mar 29 2020 21:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21293 * 120.00006 * 240.00291 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 2 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31413 * 119.99930 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99918 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47112 * 89.99702 * 11 9 7 13 13 H 1.48498 * 109.47011 * 209.99970 * 11 9 7 14 14 H 1.48494 * 109.47201 * 329.99943 * 11 9 7 15 15 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 16 16 C 1.36878 * 126.39789 * 239.99998 * 15 2 1 17 17 C 1.34667 * 106.81613 * 180.02562 * 16 15 2 18 18 N 1.34125 * 108.02327 * 0.02562 * 17 16 15 19 19 C 1.30500 * 109.25454 * 359.72497 * 18 17 16 20 20 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 21 21 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 23 23 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 24 24 H 0.96999 * 119.99993 * 179.97438 * 10 9 7 25 25 H 1.08000 * 126.58974 * 0.04066 * 16 15 2 26 26 H 1.07997 * 125.98879 * 180.02562 * 17 16 15 27 27 H 1.08001 * 125.65234 * 180.28940 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7067 -0.2501 -2.4545 7 6 2.1684 -0.8931 -3.5739 8 1 2.7894 -1.7712 -3.4747 9 6 1.8374 -0.4151 -4.8359 10 7 2.2804 -1.0312 -5.9088 11 14 0.7640 1.1040 -5.0074 12 1 1.6227 2.3150 -5.0463 13 1 -0.0232 1.0147 -6.2634 14 1 -0.1607 1.1901 -3.8487 15 7 2.0183 -0.6905 1.1963 16 6 2.8084 -0.1552 2.1775 17 6 3.0191 -1.1295 3.0829 18 7 2.3756 -2.2299 2.6657 19 6 1.7694 -1.9728 1.5391 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.1493 0.5388 -2.5436 24 1 2.0491 -0.6977 -6.7899 25 1 3.1894 0.8545 2.2178 26 1 3.6037 -1.0405 3.9866 27 1 1.1698 -2.6706 0.9733 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307632964.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:29 Heat of formation + Delta-G solvation = 32.056658 kcal Electronic energy + Delta-G solvation = -13520.260424 eV Core-core repulsion = 11086.701531 eV Total energy + Delta-G solvation = -2433.558893 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.73191 -38.66440 -34.55897 -34.09587 -31.90493 -30.10548 -28.80574 -25.60983 -23.85882 -21.04500 -20.89562 -19.48741 -18.75266 -16.71866 -16.24882 -15.08986 -14.87387 -14.19541 -13.90494 -13.61294 -13.35705 -13.16570 -12.95691 -12.41082 -12.21082 -12.10797 -11.65789 -11.30820 -10.75067 -10.14635 -9.78872 -9.63953 -9.54202 -8.63532 -8.39570 -8.12610 -6.48638 -4.01786 2.42071 2.87300 2.92890 3.02552 3.06313 3.39748 3.57475 3.93808 4.27009 4.85006 4.93270 5.06380 5.15072 5.18145 5.40555 5.58333 5.65638 5.78045 5.97773 6.02019 6.65207 7.07496 7.33323 7.53738 7.91328 8.35886 8.46117 8.73809 9.19535 9.53164 10.63548 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.059883 B = 0.008358 C = 0.007780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.463054 B = 3349.186041 C = 3598.154331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.117 3.883 3 H 0.111 0.889 4 C 0.431 3.569 5 O -0.559 6.559 6 N -0.574 5.574 7 C -0.311 4.311 8 H 0.122 0.878 9 C 0.046 3.954 10 N -0.871 5.871 11 Si 0.879 3.121 12 H -0.269 1.269 13 H -0.273 1.273 14 H -0.268 1.268 15 N -0.433 5.433 16 C -0.064 4.064 17 C -0.035 4.035 18 N -0.509 5.509 19 C 0.219 3.781 20 H 0.080 0.920 21 H 0.071 0.929 22 H 0.068 0.932 23 H 0.372 0.628 24 H 0.277 0.723 25 H 0.168 0.832 26 H 0.164 0.836 27 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.171 7.385 10.047 13.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.009 3.991 3 H 0.129 0.871 4 C 0.216 3.784 5 O -0.441 6.441 6 N -0.212 5.212 7 C -0.439 4.439 8 H 0.139 0.861 9 C -0.158 4.158 10 N -0.510 5.510 11 Si 0.705 3.295 12 H -0.194 1.194 13 H -0.198 1.198 14 H -0.194 1.194 15 N -0.115 5.115 16 C -0.197 4.197 17 C -0.183 4.183 18 N -0.227 5.227 19 C -0.064 4.064 20 H 0.098 0.902 21 H 0.091 0.909 22 H 0.087 0.913 23 H 0.205 0.795 24 H 0.087 0.913 25 H 0.185 0.815 26 H 0.181 0.819 27 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -4.737 6.018 10.135 12.703 hybrid contribution -0.700 2.057 -0.929 2.364 sum -5.437 8.075 9.206 13.399 Atomic orbital electron populations 1.22135 0.91980 1.04109 1.03335 1.21297 0.96123 0.97282 0.84377 0.87075 1.19574 0.86882 0.88171 0.83806 1.90652 1.40680 1.27343 1.85421 1.42124 1.46202 1.27345 1.05512 1.19449 1.30344 1.12270 0.81847 0.86067 1.25065 0.97629 0.98108 0.95025 1.69614 1.43685 1.39583 0.98102 0.86684 0.80742 0.83218 0.78847 1.19388 1.19841 1.19399 1.45144 1.37682 1.11661 1.16976 1.22601 1.03329 1.01302 0.92508 1.22154 1.05023 0.89761 1.01384 1.70291 1.13237 1.27608 1.11591 1.24740 1.02321 0.84958 0.94354 0.90153 0.90950 0.91259 0.79470 0.91274 0.81451 0.81859 0.78629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 9.14 37.16 0.34 -1.62 15 2 C 0.12 1.83 3.39 -69.08 -0.23 1.59 15 3 H 0.11 1.43 8.08 -51.93 -0.42 1.01 15 4 C 0.43 9.23 7.07 -10.99 -0.08 9.16 15 5 O -0.56 -14.64 15.06 5.55 0.08 -14.56 15 6 N -0.57 -12.70 4.98 -10.96 -0.05 -12.75 15 7 C -0.31 -8.37 10.16 -14.93 -0.15 -8.52 15 8 H 0.12 3.79 7.39 -52.49 -0.39 3.40 15 9 C 0.05 1.21 5.50 -17.47 -0.10 1.11 15 10 N -0.87 -24.43 13.96 55.50 0.77 -23.66 15 11 Si 0.88 18.10 27.74 -169.99 -4.71 13.38 15 12 H -0.27 -5.43 7.11 56.52 0.40 -5.03 15 13 H -0.27 -5.68 7.11 56.52 0.40 -5.28 15 14 H -0.27 -4.90 6.52 56.52 0.37 -4.53 15 15 N -0.43 -7.25 2.40 -112.69 -0.27 -7.52 15 16 C -0.06 -0.97 11.54 -16.56 -0.19 -1.16 15 17 C -0.04 -0.56 11.87 -17.81 -0.21 -0.77 15 18 N -0.51 -9.49 11.25 -14.67 -0.17 -9.66 15 19 C 0.22 3.97 10.76 -90.37 -0.97 2.99 15 20 H 0.08 0.92 7.56 -51.93 -0.39 0.53 15 21 H 0.07 0.94 7.94 -51.93 -0.41 0.53 15 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 23 H 0.37 7.05 5.18 -40.82 -0.21 6.84 15 24 H 0.28 7.13 8.31 -40.82 -0.34 6.79 15 25 H 0.17 1.90 8.06 -52.49 -0.42 1.48 15 26 H 0.16 2.08 8.06 -52.49 -0.42 1.65 15 27 H 0.20 3.31 8.06 -52.49 -0.42 2.89 15 LS Contribution 242.34 15.07 3.65 3.65 Total: -1.00 -32.76 242.34 -4.97 -37.74 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -2.68 Total: 10.59 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -1.60 Total: 2.78 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.28 Total: -53.59 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -4.71 Total: 13.38 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -32.76 -4.97 -37.74 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307632964.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.794 kcal (2) G-P(sol) polarization free energy of solvation -32.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds