Wall clock time and date at job start Sun Mar 29 2020 21:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21293 * 120.00006 * 240.00291 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.37104 * 119.99773 * 179.72591 * 6 4 2 8 8 H 1.08002 * 119.99671 * 0.27660 * 7 6 4 9 9 C 1.38950 * 120.00030 * 180.27703 * 7 6 4 10 10 N 1.31413 * 119.99930 * 179.97438 * 9 7 6 11 11 Si 1.86800 * 119.99918 * 0.02562 * 9 7 6 12 12 H 1.48498 * 109.47112 * 89.99702 * 11 9 7 13 13 H 1.48498 * 109.47011 * 209.99970 * 11 9 7 14 14 H 1.48494 * 109.47201 * 329.99943 * 11 9 7 15 15 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 16 16 C 1.36878 * 126.39789 * 239.99998 * 15 2 1 17 17 C 1.34667 * 106.81613 * 180.02562 * 16 15 2 18 18 N 1.34125 * 108.02327 * 0.02562 * 17 16 15 19 19 C 1.30500 * 109.25454 * 359.72497 * 18 17 16 20 20 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 21 21 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 23 23 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 24 24 H 0.96999 * 119.99993 * 179.97438 * 10 9 7 25 25 H 1.08000 * 126.58974 * 0.04066 * 16 15 2 26 26 H 1.07997 * 125.98879 * 180.02562 * 17 16 15 27 27 H 1.08001 * 125.65234 * 180.28940 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7297 -1.6966 -1.1190 6 7 1.7067 -0.2501 -2.4545 7 6 2.1684 -0.8931 -3.5739 8 1 2.7894 -1.7712 -3.4747 9 6 1.8374 -0.4151 -4.8359 10 7 2.2804 -1.0312 -5.9088 11 14 0.7640 1.1040 -5.0074 12 1 1.6227 2.3150 -5.0463 13 1 -0.0232 1.0147 -6.2634 14 1 -0.1607 1.1901 -3.8487 15 7 2.0183 -0.6905 1.1963 16 6 2.8084 -0.1552 2.1775 17 6 3.0191 -1.1295 3.0829 18 7 2.3756 -2.2299 2.6657 19 6 1.7694 -1.9728 1.5391 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 1.1493 0.5388 -2.5436 24 1 2.0491 -0.6977 -6.7899 25 1 3.1894 0.8545 2.2178 26 1 3.6037 -1.0405 3.9866 27 1 1.1698 -2.6706 0.9733 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307632964.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:29 Heat of formation + Delta-G solvation = 8.377610 kcal Electronic energy + Delta-G solvation = -13521.287225 eV Core-core repulsion = 11086.701531 eV Total energy + Delta-G solvation = -2434.585694 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.00546 -40.39397 -36.24925 -35.68139 -33.84523 -31.36408 -30.02939 -27.34402 -25.27503 -22.48986 -22.15616 -21.21755 -20.42578 -18.19337 -17.83568 -16.81223 -16.20769 -15.77452 -15.29974 -15.10540 -14.78853 -14.58979 -14.36295 -14.11548 -13.47892 -13.24523 -13.00819 -12.73605 -12.46016 -11.99510 -11.59784 -11.03238 -10.91228 -10.35036 -10.28575 -9.34953 -8.47101 -6.10805 1.14990 1.28439 1.33428 1.44518 1.74487 1.83971 2.20072 2.29070 2.72065 3.07827 3.73178 3.84417 3.89413 3.91524 4.08798 4.57268 4.67026 4.67778 4.80856 5.07251 5.41387 5.45875 5.84066 5.91823 6.23011 6.48489 6.76705 7.19153 7.24801 7.77568 8.69856 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.059883 B = 0.008358 C = 0.007780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 467.463054 B = 3349.186041 C = 3598.154331 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.155 0.845 4 C 0.434 3.566 5 O -0.615 6.615 6 N -0.570 5.570 7 C -0.334 4.334 8 H 0.054 0.946 9 C -0.010 4.010 10 N -0.928 5.928 11 Si 0.963 3.037 12 H -0.255 1.255 13 H -0.276 1.276 14 H -0.222 1.222 15 N -0.438 5.438 16 C -0.053 4.053 17 C -0.056 4.056 18 N -0.538 5.538 19 C 0.193 3.807 20 H 0.098 0.902 21 H 0.058 0.942 22 H 0.100 0.900 23 H 0.393 0.607 24 H 0.282 0.718 25 H 0.211 0.789 26 H 0.191 0.809 27 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 10.992 11.390 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.020 3.980 3 H 0.172 0.828 4 C 0.220 3.780 5 O -0.500 6.500 6 N -0.210 5.210 7 C -0.463 4.463 8 H 0.072 0.928 9 C -0.210 4.210 10 N -0.568 5.568 11 Si 0.781 3.219 12 H -0.179 1.179 13 H -0.201 1.201 14 H -0.144 1.144 15 N -0.120 5.120 16 C -0.186 4.186 17 C -0.203 4.203 18 N -0.257 5.257 19 C -0.090 4.090 20 H 0.116 0.884 21 H 0.078 0.922 22 H 0.119 0.881 23 H 0.230 0.770 24 H 0.091 0.909 25 H 0.228 0.772 26 H 0.208 0.792 27 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -6.448 9.634 11.511 16.337 hybrid contribution -0.049 0.819 -1.282 1.522 sum -6.497 10.453 10.229 16.003 Atomic orbital electron populations 1.22176 0.89044 1.04149 1.05733 1.21414 0.98245 0.97738 0.80575 0.82795 1.20778 0.84806 0.87152 0.85263 1.90637 1.42782 1.29963 1.86617 1.41858 1.46749 1.27884 1.04513 1.18972 1.31238 1.11641 0.84458 0.92826 1.26175 0.98906 1.02323 0.93577 1.69801 1.45625 1.42276 0.99077 0.85410 0.78884 0.77222 0.80339 1.17929 1.20064 1.14449 1.45321 1.37918 1.11354 1.17446 1.23311 1.01423 1.02750 0.91108 1.22741 1.05393 0.89318 1.02881 1.70245 1.14004 1.29275 1.12187 1.24744 1.03413 0.86045 0.94799 0.88361 0.92243 0.88147 0.76989 0.90877 0.77244 0.79241 0.79159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.16 9.14 71.98 0.66 -2.51 15 2 C 0.13 3.53 3.39 44.24 0.15 3.68 15 3 H 0.15 3.05 8.08 -2.39 -0.02 3.03 15 4 C 0.43 18.26 7.07 87.66 0.62 18.88 15 5 O -0.62 -33.35 15.06 -3.07 -0.05 -33.40 15 6 N -0.57 -24.62 4.98 -306.98 -1.53 -26.15 15 7 C -0.33 -18.63 10.16 84.04 0.85 -17.78 15 8 H 0.05 3.64 7.39 -2.91 -0.02 3.62 15 9 C -0.01 -0.53 5.50 84.93 0.47 -0.06 15 10 N -0.93 -53.99 13.96 21.66 0.30 -53.69 15 11 Si 0.96 35.48 27.74 68.60 1.90 37.38 15 12 H -0.25 -8.89 7.11 99.48 0.71 -8.18 15 13 H -0.28 -10.26 7.11 99.48 0.71 -9.56 15 14 H -0.22 -6.44 6.52 99.48 0.65 -5.79 15 15 N -0.44 -13.65 2.40 -510.45 -1.22 -14.88 15 16 C -0.05 -1.42 11.54 83.09 0.96 -0.46 15 17 C -0.06 -1.69 11.87 83.52 0.99 -0.70 15 18 N -0.54 -19.88 11.25 -200.31 -2.25 -22.13 15 19 C 0.19 6.95 10.76 180.26 1.94 8.89 15 20 H 0.10 1.71 7.56 -2.39 -0.02 1.69 15 21 H 0.06 1.40 7.94 -2.39 -0.02 1.38 15 22 H 0.10 1.53 8.14 -2.39 -0.02 1.51 15 23 H 0.39 13.43 5.18 -92.71 -0.48 12.95 15 24 H 0.28 14.91 8.31 -92.71 -0.77 14.14 15 25 H 0.21 3.61 8.06 -2.91 -0.02 3.59 15 26 H 0.19 4.35 8.06 -2.91 -0.02 4.33 15 27 H 0.19 6.74 8.06 -2.91 -0.02 6.71 15 Total: -1.00 -77.92 242.34 4.43 -73.49 By element: Atomic # 1 Polarization: 28.78 SS G_CDS: 0.64 Total: 29.42 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: 6.64 Total: 9.95 kcal Atomic # 7 Polarization: -112.14 SS G_CDS: -4.71 Total: -116.84 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.05 Total: -33.40 kcal Atomic # 14 Polarization: 35.48 SS G_CDS: 1.90 Total: 37.38 kcal Total: -77.92 4.43 -73.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307632964.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.865 kcal (2) G-P(sol) polarization free energy of solvation -77.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds