Wall clock time and date at job start Sun Mar 29 2020 21:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47177 * 2 1 4 4 C 1.39641 * 126.05965 * 124.99186 * 3 2 1 5 5 C 1.38523 * 105.34702 * 180.02562 * 4 3 2 6 6 C 1.47026 * 126.89185 * 180.02562 * 5 4 3 7 7 O 1.21669 * 120.00449 * 359.72700 * 6 5 4 8 8 N 1.34777 * 119.99763 * 179.97438 * 6 5 4 9 9 C 1.36835 * 120.00241 * 179.97438 * 8 6 5 10 10 H 1.07999 * 119.99721 * 0.02562 * 9 8 6 11 11 C 1.39050 * 120.00379 * 180.02562 * 9 8 6 12 12 N 1.31366 * 119.99725 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 120.00240 * 180.02562 * 11 9 8 14 14 H 1.48494 * 109.47196 * 59.99588 * 13 11 9 15 15 H 1.48494 * 109.47285 * 180.02562 * 13 11 9 16 16 H 1.48505 * 109.46819 * 300.00085 * 13 11 9 17 17 N 1.36642 * 106.21192 * 0.26406 * 5 4 3 18 18 H 0.96993 * 125.19879 * 179.73381 * 17 5 4 19 19 N 1.28443 * 109.60659 * 359.55723 * 17 5 4 20 20 H 1.09006 * 109.46934 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.47661 * 300.00139 * 1 2 3 22 22 H 1.09002 * 109.47024 * 60.00034 * 1 2 3 23 23 H 1.08995 * 109.47474 * 240.00372 * 2 1 3 24 24 H 1.09004 * 109.47299 * 119.99505 * 2 1 3 25 25 H 1.07996 * 127.32670 * 0.02562 * 4 3 2 26 26 H 0.96999 * 120.00043 * 0.02562 * 8 6 5 27 27 H 0.97005 * 119.99929 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9167 1.9800 0.9248 5 6 3.0832 3.2954 0.5238 6 6 3.9232 4.3152 1.1689 7 8 4.5602 4.0361 2.1672 8 7 3.9835 5.5607 0.6574 9 6 4.7647 6.5100 1.2580 10 1 5.3334 6.2611 2.1418 11 6 4.8266 7.7951 0.7306 12 7 4.1345 8.0979 -0.3442 13 14 5.8937 9.0908 1.5502 14 1 7.3075 8.6367 1.5554 15 1 5.7861 10.3677 0.7998 16 1 5.4352 9.2981 2.9474 17 7 2.3061 3.4565 -0.5885 18 1 2.2156 4.2800 -1.0929 19 7 1.7166 2.3497 -0.8664 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8933 -0.5137 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.3735 1.4910 1.7724 26 1 3.4725 5.7843 -0.1362 27 1 4.1780 8.9943 -0.7124 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307687138.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:56 Heat of formation + Delta-G solvation = 17.965972 kcal Electronic energy + Delta-G solvation = -13079.124689 eV Core-core repulsion = 10644.954777 eV Total energy + Delta-G solvation = -2434.169911 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -41.96703 -38.01926 -34.29550 -34.07118 -31.53451 -30.28453 -29.59517 -25.41234 -23.97274 -22.25467 -20.18605 -19.22399 -18.48310 -17.45334 -15.37031 -15.13687 -14.73304 -14.14375 -13.94578 -13.85114 -13.27796 -13.01755 -12.85027 -12.05698 -11.73304 -11.34047 -11.21064 -11.14001 -10.58808 -10.42825 -10.19872 -9.75580 -8.78473 -8.71363 -8.50563 -8.22532 -6.66591 -4.02835 1.96594 2.97817 3.14621 3.15708 3.19717 3.34565 3.99542 4.16053 4.64259 4.93343 5.14640 5.17023 5.42695 5.53883 5.76531 5.86726 5.96205 6.10939 6.26993 6.34364 6.40247 6.97247 7.33489 7.42321 7.82945 8.32114 8.49087 8.92623 9.23875 9.75466 10.50306 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.078623 B = 0.006630 C = 0.006213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 356.044743 B = 4222.189832 C = 4505.842268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.033 4.033 3 C 0.022 3.978 4 C -0.187 4.187 5 C 0.010 3.990 6 C 0.495 3.505 7 O -0.579 6.579 8 N -0.544 5.544 9 C -0.301 4.301 10 H 0.110 0.890 11 C 0.026 3.974 12 N -0.892 5.892 13 Si 0.938 3.062 14 H -0.270 1.270 15 H -0.282 1.282 16 H -0.270 1.270 17 N -0.388 5.388 18 H 0.443 0.557 19 N -0.293 5.293 20 H 0.054 0.946 21 H 0.053 0.947 22 H 0.059 0.941 23 H 0.073 0.927 24 H 0.078 0.922 25 H 0.156 0.844 26 H 0.389 0.611 27 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.928 -8.404 -1.853 9.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.072 4.072 3 C -0.137 4.137 4 C -0.216 4.216 5 C -0.119 4.119 6 C 0.281 3.719 7 O -0.462 6.462 8 N -0.178 5.178 9 C -0.430 4.430 10 H 0.128 0.872 11 C -0.178 4.178 12 N -0.532 5.532 13 Si 0.764 3.236 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.195 1.195 17 N -0.103 5.103 18 H 0.288 0.712 19 N -0.126 5.126 20 H 0.073 0.927 21 H 0.072 0.928 22 H 0.078 0.922 23 H 0.091 0.909 24 H 0.097 0.903 25 H 0.174 0.826 26 H 0.222 0.778 27 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -5.127 -8.186 -2.221 9.911 hybrid contribution 0.636 1.260 0.240 1.432 sum -4.491 -6.926 -1.981 8.489 Atomic orbital electron populations 1.21708 0.94974 1.01166 1.02445 1.19797 0.95814 0.88967 1.02630 1.21890 1.00610 0.96475 0.94733 1.21860 1.03967 0.92638 1.03172 1.22383 0.99780 0.97829 0.91956 1.16608 0.86353 0.81955 0.87019 1.90665 1.48517 1.80081 1.26964 1.41797 1.40937 1.08442 1.26621 1.19771 1.22640 0.89396 1.11228 0.87203 1.25397 0.97756 0.98486 0.96124 1.69562 1.40277 1.22316 1.21020 0.85793 0.79984 0.78717 0.79111 1.19535 1.20738 1.19539 1.43650 1.33567 1.10883 1.22169 0.71242 1.72916 1.20820 0.93100 1.25733 0.92690 0.92761 0.92223 0.90868 0.90315 0.82643 0.77827 0.91246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.87 37.16 0.37 -1.23 15 2 C -0.03 -0.40 6.51 -27.88 -0.18 -0.59 15 3 C 0.02 0.36 6.49 -82.47 -0.54 -0.18 15 4 C -0.19 -3.50 10.77 -38.95 -0.42 -3.92 15 5 C 0.01 0.21 7.15 -82.06 -0.59 -0.38 15 6 C 0.49 12.16 7.75 -12.70 -0.10 12.06 15 7 O -0.58 -16.08 16.49 5.22 0.09 -15.99 15 8 N -0.54 -13.57 5.27 -12.08 -0.06 -13.64 15 9 C -0.30 -8.12 9.68 -15.02 -0.15 -8.27 15 10 H 0.11 3.08 7.15 -52.49 -0.38 2.71 15 11 C 0.03 0.67 5.50 -17.45 -0.10 0.57 15 12 N -0.89 -23.08 13.05 55.50 0.72 -22.36 15 13 Si 0.94 20.13 29.55 -169.99 -5.02 15.11 15 14 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 15 H -0.28 -5.90 7.11 56.52 0.40 -5.50 15 16 H -0.27 -5.77 7.11 56.52 0.40 -5.37 15 17 N -0.39 -6.93 6.85 33.48 0.23 -6.70 15 18 H 0.44 6.95 8.22 -190.46 -1.57 5.38 15 19 N -0.29 -5.11 12.11 33.63 0.41 -4.71 15 20 H 0.05 0.48 8.14 -51.93 -0.42 0.06 15 21 H 0.05 0.63 8.14 -51.93 -0.42 0.20 15 22 H 0.06 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.07 0.81 8.14 -51.93 -0.42 0.39 15 24 H 0.08 0.83 8.12 -51.93 -0.42 0.41 15 25 H 0.16 2.73 8.06 -52.49 -0.42 2.31 15 26 H 0.39 9.02 7.08 -40.82 -0.29 8.74 15 27 H 0.28 6.78 8.31 -40.82 -0.34 6.44 15 LS Contribution 247.89 15.07 3.74 3.74 Total: -1.00 -30.29 247.89 -5.50 -35.79 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -3.90 Total: 10.68 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: -1.70 Total: -1.93 kcal Atomic # 7 Polarization: -48.70 SS G_CDS: 1.30 Total: -47.41 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: 0.09 Total: -15.99 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -30.29 -5.50 -35.79 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307687138.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.759 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds