Wall clock time and date at job start Sun Mar 29 2020 21:53:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.50696 * 109.46996 * 240.00332 * 2 1 3 5 5 H 1.08000 * 119.99925 * 239.99847 * 4 2 1 6 6 C 1.37873 * 120.00616 * 59.99875 * 4 2 1 7 7 N 1.31521 * 119.99448 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00491 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46983 * 59.99694 * 8 6 4 10 10 H 1.48498 * 109.47202 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47313 * 300.00006 * 8 6 4 12 12 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 13 13 C 1.34784 * 119.99971 * 275.00026 * 12 2 1 14 14 O 1.21274 * 119.99897 * 359.72827 * 13 12 2 15 15 C 1.50695 * 119.99635 * 179.97438 * 13 12 2 16 16 C 1.54634 * 111.03896 * 292.02428 * 15 13 12 17 17 C 1.51110 * 104.72331 * 217.33716 * 16 15 13 18 18 C 1.30521 * 111.10738 * 16.43637 * 17 16 15 19 19 C 1.51105 * 111.10368 * 0.02562 * 18 17 16 20 20 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 21 21 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 23 23 H 0.97001 * 119.99446 * 180.02562 * 7 6 4 24 24 H 0.96999 * 119.99984 * 94.99874 * 12 2 1 25 25 H 1.08996 * 110.91830 * 56.03807 * 15 13 12 26 26 H 1.08995 * 110.38833 * 336.14338 * 16 15 13 27 27 H 1.08998 * 110.38845 * 98.52363 * 16 15 13 28 28 H 1.08004 * 124.44513 * 196.45493 * 17 16 15 29 29 H 1.07997 * 124.44864 * 180.02562 * 18 17 16 30 30 H 1.09003 * 110.38734 * 224.75811 * 19 18 17 31 31 H 1.08995 * 110.39122 * 102.37206 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2204 11 1 3.8063 -1.1209 -4.0082 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8633 1.1597 2.4104 15 6 2.6489 -0.7287 3.5877 16 6 1.6213 -1.7722 4.0840 17 6 1.6982 -1.7000 5.5914 18 6 2.2948 -0.6060 5.9798 19 6 2.7149 0.2341 4.7962 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1615 -3.4844 24 1 2.2491 -1.6317 1.1526 25 1 3.6184 -1.1910 3.4020 26 1 0.6199 -1.5114 3.7420 27 1 1.8944 -2.7688 3.7372 28 1 1.3105 -2.4547 6.2598 29 1 2.4658 -0.3367 7.0116 30 1 3.7320 0.6015 4.9332 31 1 2.0251 1.0665 4.6573 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307748695.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:11 Heat of formation + Delta-G solvation = -32.968838 kcal Electronic energy + Delta-G solvation = -13654.686190 eV Core-core repulsion = 11321.847923 eV Total energy + Delta-G solvation = -2332.838267 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.58895 -37.23036 -34.72191 -32.36554 -29.92974 -28.26889 -27.88558 -25.23831 -22.55229 -20.40322 -19.13657 -18.65361 -17.22557 -16.08497 -15.83526 -15.11922 -14.39492 -13.95513 -13.31185 -12.62383 -12.38858 -12.29938 -12.07037 -11.62370 -11.45537 -11.26475 -11.04033 -10.96796 -10.84824 -10.68349 -10.30007 -10.21916 -9.04239 -8.94991 -8.80400 -8.53072 -7.87745 -6.10974 -4.20370 2.30638 3.26251 3.31431 3.32600 3.42320 4.11741 4.39495 4.67862 4.82593 5.20706 5.26709 5.32110 5.54358 5.77250 5.80775 5.93386 6.04189 6.10933 6.38286 6.56433 6.84350 6.94002 6.98548 7.17145 7.49378 7.58730 7.71494 7.93603 8.16825 8.70553 8.80056 9.17092 9.47427 10.95024 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062880 B = 0.006969 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.184888 B = 4017.003445 C = 4147.090948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.708 5.708 13 C 0.510 3.490 14 O -0.555 6.555 15 C -0.118 4.118 16 C -0.088 4.088 17 C -0.172 4.172 18 C -0.163 4.163 19 C -0.088 4.088 20 H 0.090 0.910 21 H 0.026 0.974 22 H 0.014 0.986 23 H 0.265 0.735 24 H 0.388 0.612 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.070 0.930 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.212 -5.880 11.608 13.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.355 5.355 13 C 0.294 3.706 14 O -0.435 6.435 15 C -0.140 4.140 16 C -0.126 4.126 17 C -0.190 4.190 18 C -0.181 4.181 19 C -0.125 4.125 20 H 0.108 0.892 21 H 0.045 0.955 22 H 0.033 0.967 23 H 0.075 0.925 24 H 0.221 0.779 25 H 0.116 0.884 26 H 0.098 0.902 27 H 0.094 0.906 28 H 0.141 0.859 29 H 0.141 0.859 30 H 0.089 0.911 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.910 -4.896 11.439 12.589 hybrid contribution 0.402 -0.987 -0.842 1.358 sum 2.312 -5.883 10.597 12.339 Atomic orbital electron populations 1.22073 0.98524 0.99062 1.00850 1.18735 0.91009 0.93997 0.80123 0.93424 1.21190 1.32467 1.13212 0.90383 0.92146 1.24895 0.94824 0.94960 0.99060 1.69901 1.35856 1.22433 1.23964 0.86499 0.79152 0.79575 0.81805 1.20172 1.21123 1.20187 1.46512 1.64971 1.13506 1.10485 1.20190 0.78478 0.87348 0.84570 1.90630 1.51658 1.16120 1.85058 1.22203 1.00221 0.97261 0.94279 1.21294 0.99479 0.98648 0.93159 1.23224 1.00778 0.98594 0.96378 1.23333 0.99765 0.96167 0.98825 1.21282 1.02396 0.98322 0.90521 0.89184 0.95495 0.96717 0.92530 0.77934 0.88361 0.90191 0.90639 0.85932 0.85948 0.91127 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.36 16 2 C 0.26 6.81 2.56 -69.08 -0.18 6.63 16 3 H 0.05 1.42 7.57 -51.93 -0.39 1.03 16 4 C -0.53 -14.30 8.73 -34.44 -0.30 -14.60 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -25.15 11.32 55.43 0.63 -24.52 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.71 -14.96 5.07 -54.93 -0.28 -15.24 16 13 C 0.51 10.36 7.03 -10.98 -0.08 10.28 16 14 O -0.56 -13.55 15.17 5.56 0.08 -13.47 16 15 C -0.12 -1.78 3.55 -90.04 -0.32 -2.10 16 16 C -0.09 -1.16 6.37 -26.82 -0.17 -1.33 16 17 C -0.17 -1.99 10.77 -35.69 -0.38 -2.38 16 18 C -0.16 -1.93 10.77 -35.69 -0.38 -2.32 16 19 C -0.09 -1.26 6.18 -26.81 -0.17 -1.42 16 20 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 21 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.08 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.39 7.10 8.54 -40.82 -0.35 6.75 16 25 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 26 H 0.08 1.16 7.88 -51.93 -0.41 0.75 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 29 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.09 1.58 6.96 -51.93 -0.36 1.22 16 LS Contribution 262.84 15.07 3.96 3.96 Total: -1.00 -30.36 262.84 -6.69 -37.05 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.33 Total: 5.41 kcal Atomic # 6 Polarization: -7.18 SS G_CDS: -1.73 Total: -8.91 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.35 Total: -39.76 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.36 -6.69 -37.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748695.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.080 kcal (2) G-P(sol) polarization free energy of solvation -30.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds