Wall clock time and date at job start Sun Mar 29 2020 21:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.50696 * 109.46996 * 240.00332 * 2 1 3 5 5 H 1.08000 * 119.99925 * 239.99847 * 4 2 1 6 6 C 1.37873 * 120.00616 * 59.99875 * 4 2 1 7 7 N 1.31521 * 119.99448 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00491 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46983 * 59.99694 * 8 6 4 10 10 H 1.48498 * 109.47202 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47313 * 300.00006 * 8 6 4 12 12 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 13 13 C 1.34784 * 119.99971 * 275.00026 * 12 2 1 14 14 O 1.21274 * 119.99897 * 359.72827 * 13 12 2 15 15 C 1.50695 * 119.99635 * 179.97438 * 13 12 2 16 16 C 1.54634 * 111.03896 * 292.02428 * 15 13 12 17 17 C 1.51110 * 104.72331 * 217.33716 * 16 15 13 18 18 C 1.30521 * 111.10738 * 16.43637 * 17 16 15 19 19 C 1.51105 * 111.10368 * 0.02562 * 18 17 16 20 20 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 21 21 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 22 22 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 23 23 H 0.97001 * 119.99446 * 180.02562 * 7 6 4 24 24 H 0.96999 * 119.99984 * 94.99874 * 12 2 1 25 25 H 1.08996 * 110.91830 * 56.03807 * 15 13 12 26 26 H 1.08995 * 110.38833 * 336.14338 * 16 15 13 27 27 H 1.08998 * 110.38845 * 98.52363 * 16 15 13 28 28 H 1.08004 * 124.44513 * 196.45493 * 17 16 15 29 29 H 1.07997 * 124.44864 * 180.02562 * 18 17 16 30 30 H 1.09003 * 110.38734 * 224.75811 * 19 18 17 31 31 H 1.08995 * 110.39122 * 102.37206 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0079 9 1 1.8258 -2.5202 -4.0077 10 1 1.8259 -0.4205 -5.2204 11 1 3.8063 -1.1209 -4.0082 12 7 2.0184 -0.6906 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8633 1.1597 2.4104 15 6 2.6489 -0.7287 3.5877 16 6 1.6213 -1.7722 4.0840 17 6 1.6982 -1.7000 5.5914 18 6 2.2948 -0.6060 5.9798 19 6 2.7149 0.2341 4.7962 20 1 -0.3634 0.5139 -0.8899 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 0.7089 1.1615 -3.4844 24 1 2.2491 -1.6317 1.1526 25 1 3.6184 -1.1910 3.4020 26 1 0.6199 -1.5114 3.7420 27 1 1.8944 -2.7688 3.7372 28 1 1.3105 -2.4547 6.2598 29 1 2.4658 -0.3367 7.0116 30 1 3.7320 0.6015 4.9332 31 1 2.0251 1.0665 4.6573 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307748695.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:10 Heat of formation + Delta-G solvation = -52.817465 kcal Electronic energy + Delta-G solvation = -13655.546891 eV Core-core repulsion = 11321.847923 eV Total energy + Delta-G solvation = -2333.698968 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.07537 -38.57404 -36.66224 -34.33210 -31.54114 -29.73466 -29.01418 -27.34947 -24.11973 -22.13561 -20.80608 -19.60062 -18.90302 -17.67729 -17.28696 -16.84821 -16.12154 -15.64256 -14.99152 -14.40228 -13.97579 -13.73259 -13.38927 -13.04401 -12.98752 -12.89374 -12.78526 -12.52937 -12.29637 -12.21554 -12.03970 -12.00371 -11.13069 -10.70309 -10.55666 -9.78511 -9.74481 -8.18078 -6.36219 1.40404 1.44981 1.47353 1.55283 1.80273 2.35354 2.63421 3.12142 3.56536 3.73212 4.03453 4.31712 4.40914 4.61544 4.73837 4.81293 4.85042 4.89734 4.98362 5.07188 5.09605 5.23732 5.42598 5.60267 5.62328 5.68172 5.90135 6.05552 6.08827 6.71681 6.96708 7.31633 7.55864 8.88252 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062880 B = 0.006969 C = 0.006750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.184888 B = 4017.003445 C = 4147.090948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.268 3.732 3 H -0.004 1.004 4 C -0.548 4.548 5 H 0.074 0.926 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.975 3.025 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.270 1.270 12 N -0.702 5.702 13 C 0.505 3.495 14 O -0.603 6.603 15 C -0.112 4.112 16 C -0.089 4.089 17 C -0.164 4.164 18 C -0.166 4.166 19 C -0.093 4.093 20 H 0.066 0.934 21 H 0.041 0.959 22 H 0.009 0.991 23 H 0.266 0.734 24 H 0.405 0.595 25 H 0.124 0.876 26 H 0.061 0.939 27 H 0.101 0.899 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.080 0.920 31 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.061 -8.379 12.443 15.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.165 3.835 3 H 0.014 0.986 4 C -0.587 4.587 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.187 1.187 10 H -0.212 1.212 11 H -0.195 1.195 12 N -0.351 5.351 13 C 0.292 3.708 14 O -0.485 6.485 15 C -0.133 4.133 16 C -0.126 4.126 17 C -0.182 4.182 18 C -0.184 4.184 19 C -0.131 4.131 20 H 0.085 0.915 21 H 0.061 0.939 22 H 0.028 0.972 23 H 0.075 0.925 24 H 0.241 0.759 25 H 0.142 0.858 26 H 0.080 0.920 27 H 0.119 0.881 28 H 0.171 0.829 29 H 0.166 0.834 30 H 0.098 0.902 31 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 2.771 -7.436 12.302 14.639 hybrid contribution 0.132 -0.151 -1.078 1.096 sum 2.903 -7.587 11.224 13.855 Atomic orbital electron populations 1.21891 0.98349 0.99477 0.99432 1.18349 0.91134 0.91879 0.82174 0.98639 1.21525 1.32708 1.13634 0.90784 0.90750 1.25843 0.94832 0.95580 1.02447 1.70060 1.36995 1.23969 1.24709 0.85353 0.78629 0.78700 0.77383 1.18748 1.21179 1.19545 1.46271 1.64990 1.14200 1.09605 1.21152 0.77147 0.86909 0.85585 1.90608 1.53518 1.18534 1.85883 1.22225 1.01774 0.97757 0.91550 1.21339 0.97690 0.98986 0.94603 1.23409 1.00159 0.99150 0.95461 1.23407 1.00230 0.95709 0.99020 1.21297 1.02370 0.97804 0.91580 0.91504 0.93945 0.97173 0.92523 0.75940 0.85789 0.92046 0.88100 0.82945 0.83383 0.90178 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.88 9.26 71.98 0.67 -6.22 16 2 C 0.27 14.23 2.56 44.24 0.11 14.35 16 3 H 0.00 -0.27 7.57 -2.38 -0.02 -0.29 16 4 C -0.55 -29.33 8.73 25.60 0.22 -29.11 16 5 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.70 5.30 84.65 0.45 1.15 16 7 N -0.92 -53.38 11.32 21.45 0.24 -53.14 16 8 Si 0.98 42.07 29.54 68.60 2.03 44.10 16 9 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 10 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 12 N -0.70 -29.71 5.07 -446.10 -2.26 -31.98 16 13 C 0.50 20.73 7.03 87.65 0.62 21.34 16 14 O -0.60 -30.72 15.17 -3.01 -0.05 -30.77 16 15 C -0.11 -3.21 3.55 -10.42 -0.04 -3.25 16 16 C -0.09 -2.10 6.37 30.53 0.19 -1.90 16 17 C -0.16 -3.22 10.77 26.27 0.28 -2.94 16 18 C -0.17 -3.47 10.77 26.27 0.28 -3.19 16 19 C -0.09 -2.57 6.18 30.54 0.19 -2.38 16 20 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 21 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 22 H 0.01 0.48 8.14 -2.38 -0.02 0.46 16 23 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 24 H 0.41 14.27 8.54 -92.71 -0.79 13.47 16 25 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 26 H 0.06 1.70 7.88 -2.39 -0.02 1.68 16 27 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.15 2.14 8.06 -2.91 -0.02 2.11 16 29 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.06 2.16 6.96 -2.39 -0.02 2.15 16 Total: -1.00 -67.51 262.84 3.27 -64.25 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: 0.32 Total: 19.68 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 2.98 Total: -12.14 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -2.02 Total: -85.12 kcal Atomic # 8 Polarization: -30.72 SS G_CDS: -0.05 Total: -30.77 kcal Atomic # 14 Polarization: 42.07 SS G_CDS: 2.03 Total: 44.10 kcal Total: -67.51 3.27 -64.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748695.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.431 kcal (2) G-P(sol) polarization free energy of solvation -67.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds