Wall clock time and date at job start Sun Mar 29 2020 21:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.34770 * 120.00256 * 84.99846 * 12 2 1 14 14 O 1.21283 * 120.00026 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99922 * 180.02562 * 13 12 2 16 16 C 1.54631 * 111.03821 * 292.02119 * 15 13 12 17 17 C 1.51100 * 104.72910 * 217.33724 * 16 15 13 18 18 C 1.30532 * 111.10238 * 16.43612 * 17 16 15 19 19 C 1.51099 * 111.10594 * 359.97438 * 18 17 16 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 23 23 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 24 24 H 0.97005 * 119.99374 * 264.99912 * 12 2 1 25 25 H 1.08998 * 110.91247 * 56.03561 * 15 13 12 26 26 H 1.09008 * 110.38622 * 336.14788 * 16 15 13 27 27 H 1.08998 * 110.38688 * 98.52258 * 16 15 13 28 28 H 1.07998 * 124.44949 * 196.45997 * 17 16 15 29 29 H 1.08001 * 124.44875 * 180.02562 * 18 17 16 30 30 H 1.09000 * 110.38846 * 224.75567 * 19 18 17 31 31 H 1.08997 * 110.38754 * 102.37374 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8582 1.1586 -2.4116 15 6 2.6490 -0.7286 -3.5877 16 6 4.1350 -1.1267 -3.4317 17 6 4.7341 -0.9203 -4.8034 18 6 3.9599 -0.1781 -5.5476 19 6 2.7152 0.2336 -4.7964 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7094 1.1615 3.4845 24 1 2.2491 -1.6317 -1.1527 25 1 2.0319 -1.5982 -3.8138 26 1 4.6260 -0.4826 -2.7021 27 1 4.2188 -2.1719 -3.1341 28 1 5.6785 -1.3329 -5.1260 29 1 4.1797 0.1039 -6.5667 30 1 1.8341 0.1135 -5.4267 31 1 2.8013 1.2652 -4.4553 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307748696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:12 Heat of formation + Delta-G solvation = -33.067137 kcal Electronic energy + Delta-G solvation = -13649.671973 eV Core-core repulsion = 11316.829444 eV Total energy + Delta-G solvation = -2332.842529 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.58415 -37.22740 -34.72031 -32.36671 -29.93026 -28.27769 -27.85335 -25.24358 -22.57147 -20.34812 -19.16212 -18.65589 -17.24687 -16.02768 -15.80987 -15.17054 -14.45508 -13.72841 -13.52793 -12.61638 -12.42299 -12.09589 -12.04170 -11.74702 -11.48031 -11.20190 -11.02037 -10.96972 -10.93491 -10.63560 -10.28750 -10.22197 -9.04140 -8.94601 -8.79250 -8.53354 -7.87781 -6.11326 -4.20551 2.31779 3.25004 3.31511 3.33364 3.42318 4.11616 4.39451 4.68768 4.83436 5.20936 5.26834 5.33265 5.55057 5.78146 5.81503 5.94928 6.05142 6.11622 6.39088 6.57508 6.84431 6.95072 6.98835 7.17207 7.49291 7.58776 7.71442 7.93490 8.16691 8.70537 8.80044 9.17033 9.47288 10.94724 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052700 B = 0.007388 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.181667 B = 3788.816304 C = 4144.463296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.048 0.952 4 C -0.533 4.533 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.708 5.708 13 C 0.509 3.491 14 O -0.555 6.555 15 C -0.118 4.118 16 C -0.089 4.089 17 C -0.171 4.171 18 C -0.164 4.164 19 C -0.088 4.088 20 H 0.026 0.974 21 H 0.090 0.910 22 H 0.014 0.986 23 H 0.264 0.736 24 H 0.389 0.611 25 H 0.097 0.903 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.123 0.877 29 H 0.123 0.877 30 H 0.070 0.930 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.506 -5.306 -11.019 13.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.161 3.839 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.138 4.138 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.355 5.355 13 C 0.294 3.706 14 O -0.435 6.435 15 C -0.139 4.139 16 C -0.126 4.126 17 C -0.189 4.189 18 C -0.182 4.182 19 C -0.125 4.125 20 H 0.045 0.955 21 H 0.108 0.892 22 H 0.033 0.967 23 H 0.074 0.926 24 H 0.221 0.779 25 H 0.116 0.884 26 H 0.100 0.900 27 H 0.094 0.906 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.088 0.912 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.186 -4.334 -10.857 12.417 hybrid contribution 0.434 -0.963 0.856 1.360 sum 4.620 -5.297 -10.001 12.224 Atomic orbital electron populations 1.22075 0.98518 0.99077 1.00874 1.18742 0.91020 0.93999 0.80140 0.93434 1.21227 1.32368 1.13199 0.90360 0.92085 1.24897 0.94817 0.94985 0.99074 1.69913 1.35888 1.22495 1.23845 0.86444 0.78594 0.79831 0.82194 1.20568 1.21072 1.19854 1.46510 1.64891 1.13528 1.10535 1.20193 0.78396 0.87370 0.84637 1.90632 1.51506 1.16232 1.85106 1.22193 0.97464 0.99552 0.94724 1.21301 0.93175 1.01961 0.96196 1.23231 0.99668 1.00360 0.95629 1.23327 0.97051 0.98705 0.99101 1.21274 0.96207 1.00884 0.94147 0.95492 0.89179 0.96674 0.92592 0.77929 0.88445 0.90046 0.90629 0.85928 0.85958 0.91169 0.88684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.80 2.56 -69.08 -0.18 6.62 16 3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.25 8.73 -34.44 -0.30 -14.55 16 5 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -25.14 11.32 55.43 0.63 -24.51 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.71 -14.95 5.07 -54.93 -0.28 -15.23 16 13 C 0.51 10.35 7.03 -10.99 -0.08 10.27 16 14 O -0.56 -13.55 15.17 5.55 0.08 -13.47 16 15 C -0.12 -1.78 3.55 -90.06 -0.32 -2.10 16 16 C -0.09 -1.19 6.37 -26.83 -0.17 -1.36 16 17 C -0.17 -2.01 10.78 -35.70 -0.38 -2.39 16 18 C -0.16 -1.96 10.78 -35.70 -0.38 -2.35 16 19 C -0.09 -1.26 6.18 -26.83 -0.17 -1.42 16 20 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 21 H 0.09 2.47 6.07 -51.93 -0.32 2.15 16 22 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 23 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 24 H 0.39 7.10 8.54 -40.82 -0.35 6.75 16 25 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 26 H 0.08 1.22 7.88 -51.92 -0.41 0.81 16 27 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 28 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 29 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 30 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.10 1.59 6.96 -51.93 -0.36 1.22 16 LS Contribution 262.84 15.07 3.96 3.96 Total: -1.00 -30.36 262.84 -6.69 -37.04 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -4.33 Total: 5.47 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.73 Total: -8.97 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.35 Total: -39.74 kcal Atomic # 8 Polarization: -13.55 SS G_CDS: 0.08 Total: -13.47 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -30.36 -6.69 -37.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.974 kcal (2) G-P(sol) polarization free energy of solvation -30.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds