Wall clock time and date at job start Sun Mar 29 2020 21:53:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.34770 * 120.00256 * 84.99846 * 12 2 1 14 14 O 1.21283 * 120.00026 * 359.97438 * 13 12 2 15 15 C 1.50701 * 119.99922 * 180.02562 * 13 12 2 16 16 C 1.54631 * 111.03821 * 292.02119 * 15 13 12 17 17 C 1.51100 * 104.72910 * 217.33724 * 16 15 13 18 18 C 1.30532 * 111.10238 * 16.43612 * 17 16 15 19 19 C 1.51099 * 111.10594 * 359.97438 * 18 17 16 20 20 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 21 21 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 22 22 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 23 23 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 24 24 H 0.97005 * 119.99374 * 264.99912 * 12 2 1 25 25 H 1.08998 * 110.91247 * 56.03561 * 15 13 12 26 26 H 1.09008 * 110.38622 * 336.14788 * 16 15 13 27 27 H 1.08998 * 110.38688 * 98.52258 * 16 15 13 28 28 H 1.07998 * 124.44949 * 196.45997 * 17 16 15 29 29 H 1.08001 * 124.44875 * 180.02562 * 18 17 16 30 30 H 1.09000 * 110.38846 * 224.75567 * 19 18 17 31 31 H 1.08997 * 110.38754 * 102.37374 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8582 1.1586 -2.4116 15 6 2.6490 -0.7286 -3.5877 16 6 4.1350 -1.1267 -3.4317 17 6 4.7341 -0.9203 -4.8034 18 6 3.9599 -0.1781 -5.5476 19 6 2.7152 0.2336 -4.7964 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 0.7094 1.1615 3.4845 24 1 2.2491 -1.6317 -1.1527 25 1 2.0319 -1.5982 -3.8138 26 1 4.6260 -0.4826 -2.7021 27 1 4.2188 -2.1719 -3.1341 28 1 5.6785 -1.3329 -5.1260 29 1 4.1797 0.1039 -6.5667 30 1 1.8341 0.1135 -5.4267 31 1 2.8013 1.2652 -4.4553 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307748696.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:12 Heat of formation + Delta-G solvation = -52.914416 kcal Electronic energy + Delta-G solvation = -13650.532616 eV Core-core repulsion = 11316.829444 eV Total energy + Delta-G solvation = -2333.703172 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.07328 -38.57734 -36.65949 -34.33244 -31.54406 -29.73584 -29.00300 -27.35402 -24.14555 -22.08695 -20.82438 -19.61427 -18.93178 -17.62487 -17.21562 -16.93274 -16.21667 -15.37497 -15.21511 -14.43761 -13.86166 -13.68322 -13.47493 -13.00773 -12.97373 -12.92757 -12.80045 -12.58346 -12.27913 -12.16717 -12.04561 -12.00727 -11.12211 -10.70617 -10.56135 -9.79162 -9.73775 -8.18366 -6.36252 1.40217 1.44805 1.45432 1.56362 1.80281 2.35112 2.63310 3.12008 3.56770 3.73229 4.03672 4.31722 4.40915 4.61499 4.73892 4.81492 4.84770 4.90328 4.98148 5.07650 5.09868 5.23660 5.42789 5.60442 5.62369 5.68401 5.89974 6.05395 6.08914 6.71899 6.96732 7.31580 7.55879 8.88188 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.052700 B = 0.007388 C = 0.006754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.181667 B = 3788.816304 C = 4144.463296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.268 3.732 3 H -0.005 1.005 4 C -0.547 4.547 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.974 3.026 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.258 1.258 12 N -0.702 5.702 13 C 0.505 3.495 14 O -0.603 6.603 15 C -0.111 4.111 16 C -0.090 4.090 17 C -0.165 4.165 18 C -0.166 4.166 19 C -0.093 4.093 20 H 0.042 0.958 21 H 0.066 0.934 22 H 0.011 0.989 23 H 0.265 0.735 24 H 0.405 0.595 25 H 0.126 0.874 26 H 0.059 0.941 27 H 0.100 0.900 28 H 0.152 0.848 29 H 0.149 0.851 30 H 0.082 0.918 31 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.728 -7.693 -11.803 15.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.164 3.836 3 H 0.013 0.987 4 C -0.585 4.585 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.799 3.201 9 H -0.204 1.204 10 H -0.209 1.209 11 H -0.182 1.182 12 N -0.351 5.351 13 C 0.292 3.708 14 O -0.485 6.485 15 C -0.132 4.132 16 C -0.127 4.127 17 C -0.183 4.183 18 C -0.183 4.183 19 C -0.130 4.130 20 H 0.061 0.939 21 H 0.085 0.915 22 H 0.030 0.970 23 H 0.075 0.925 24 H 0.241 0.759 25 H 0.144 0.856 26 H 0.077 0.923 27 H 0.119 0.881 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.100 0.900 31 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 5.423 -6.761 -11.668 14.535 hybrid contribution 0.036 -0.163 1.073 1.086 sum 5.459 -6.924 -10.595 13.784 Atomic orbital electron populations 1.21898 0.98325 0.99518 0.99502 1.18356 0.91157 0.91869 0.82190 0.98672 1.21554 1.32572 1.13594 0.90752 0.90724 1.25842 0.94842 0.95614 1.02451 1.70067 1.37031 1.24027 1.24627 0.85308 0.77741 0.79221 0.77856 1.20354 1.20943 1.18221 1.46269 1.64906 1.14217 1.09662 1.21153 0.77040 0.86938 0.85672 1.90611 1.53338 1.18638 1.85963 1.22218 0.99109 1.00003 0.91889 1.21342 0.91408 1.02917 0.97068 1.23405 1.00529 1.00126 0.94194 1.23416 0.95776 0.98847 1.00279 1.21292 0.98451 0.98958 0.94331 0.93923 0.91516 0.97035 0.92542 0.75940 0.85580 0.92288 0.88130 0.83014 0.83343 0.89982 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.26 16 2 C 0.27 14.21 2.56 44.25 0.11 14.32 16 3 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 4 C -0.55 -29.21 8.73 25.60 0.22 -28.99 16 5 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.67 5.30 84.65 0.45 1.12 16 7 N -0.92 -53.39 11.32 21.45 0.24 -53.15 16 8 Si 0.97 42.10 29.54 68.60 2.03 44.12 16 9 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 12 N -0.70 -29.68 5.07 -446.09 -2.26 -31.94 16 13 C 0.50 20.70 7.03 87.66 0.62 21.32 16 14 O -0.60 -30.70 15.17 -3.04 -0.05 -30.74 16 15 C -0.11 -3.18 3.55 -10.43 -0.04 -3.22 16 16 C -0.09 -2.18 6.37 30.53 0.19 -1.99 16 17 C -0.16 -3.31 10.78 26.26 0.28 -3.03 16 18 C -0.17 -3.49 10.78 26.26 0.28 -3.20 16 19 C -0.09 -2.55 6.18 30.53 0.19 -2.37 16 20 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 21 H 0.07 3.77 6.07 -2.39 -0.01 3.76 16 22 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 24 H 0.41 14.26 8.54 -92.70 -0.79 13.47 16 25 H 0.13 2.93 8.14 -2.39 -0.02 2.91 16 26 H 0.06 1.71 7.88 -2.38 -0.02 1.69 16 27 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 29 H 0.15 2.35 8.06 -2.91 -0.02 2.33 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.06 2.15 6.96 -2.39 -0.02 2.13 16 Total: -1.00 -67.53 262.84 3.27 -64.27 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.32 Total: 19.74 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 2.98 Total: -12.29 kcal Atomic # 7 Polarization: -83.08 SS G_CDS: -2.02 Total: -85.10 kcal Atomic # 8 Polarization: -30.70 SS G_CDS: -0.05 Total: -30.74 kcal Atomic # 14 Polarization: 42.10 SS G_CDS: 2.03 Total: 44.12 kcal Total: -67.53 3.27 -64.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307748696.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.353 kcal (2) G-P(sol) polarization free energy of solvation -67.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds