Wall clock time and date at job start Sun Mar 29 2020 21:54:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37092 * 120.00454 * 2 1 4 4 H 1.07995 * 120.00452 * 201.70191 * 3 2 1 5 5 C 1.38951 * 119.99786 * 21.70258 * 3 2 1 6 6 N 1.31410 * 120.00266 * 14.83637 * 5 3 2 7 7 Si 1.86807 * 119.99976 * 194.83634 * 5 3 2 8 8 H 1.48503 * 109.46864 * 59.99999 * 7 5 3 9 9 H 1.48493 * 109.46887 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46810 * 300.00100 * 7 5 3 11 11 C 1.34776 * 119.99304 * 180.02562 * 2 1 3 12 12 O 1.21296 * 119.99592 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00673 * 359.97438 * 11 2 1 14 14 H 1.09003 * 115.57632 * 325.63034 * 13 11 2 15 15 C 1.53120 * 117.51288 * 111.38770 * 13 11 2 16 16 C 1.52463 * 59.90994 * 107.47529 * 15 13 11 17 17 C 1.53261 * 128.58324 * 242.37930 * 16 15 13 18 18 C 1.53883 * 86.88136 * 194.88848 * 17 16 15 19 19 C 1.53256 * 128.58505 * 117.58557 * 16 15 13 20 20 H 1.09002 * 109.46991 * 270.61558 * 1 2 3 21 21 H 1.09005 * 109.46589 * 30.61375 * 1 2 3 22 22 H 1.08995 * 109.47719 * 150.61135 * 1 2 3 23 23 H 0.97003 * 120.00267 * 179.97438 * 6 5 3 24 24 H 1.09001 * 117.51612 * 0.02562 * 15 13 11 25 25 H 1.09001 * 117.51423 * 214.94318 * 15 13 11 26 26 H 1.08998 * 113.64306 * 309.38627 * 17 16 15 27 27 H 1.09001 * 113.64447 * 80.38875 * 17 16 15 28 28 H 1.08997 * 113.59183 * 270.39325 * 18 17 16 29 29 H 1.09004 * 113.58927 * 139.57290 * 18 17 16 30 30 H 1.09003 * 113.64189 * 279.60276 * 19 16 15 31 31 H 1.08994 * 113.64829 * 50.61174 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1731 1.2203 -0.3458 5 6 1.5298 2.3479 0.4450 6 7 0.4105 2.2735 1.1296 7 14 2.2862 4.0144 0.0701 8 1 2.3767 4.1972 -1.4008 9 1 1.4366 5.0853 0.6502 10 1 3.6461 4.0851 0.6624 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4724 -0.0005 14 1 0.4474 -2.4742 0.5549 15 6 1.4600 -3.3323 -1.2653 16 6 2.2041 -3.7598 -0.0051 17 6 3.7127 -3.9346 0.2012 18 6 3.3628 -4.7004 1.4892 19 6 2.0050 -5.0223 0.8405 20 1 -0.3633 0.0110 1.0276 21 1 -0.3633 0.8845 -0.5234 22 1 -0.3634 -0.8953 -0.5043 23 1 -0.0227 3.0837 1.4405 24 1 2.0545 -2.9541 -2.0969 25 1 0.5711 -3.8992 -1.5420 26 1 4.1892 -4.5531 -0.5595 27 1 4.2410 -2.9979 0.3792 28 1 3.2854 -4.0618 2.3691 29 1 3.9854 -5.5794 1.6569 30 1 1.1642 -4.9576 1.5313 31 1 2.0062 -5.9435 0.2579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307751295.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:26 Heat of formation + Delta-G solvation = 20.369272 kcal Electronic energy + Delta-G solvation = -13939.259130 eV Core-core repulsion = 11608.733777 eV Total energy + Delta-G solvation = -2330.525353 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.54252 -37.48644 -34.56063 -33.07705 -31.44902 -26.43406 -25.24838 -24.93772 -22.82801 -22.23211 -19.17853 -17.39267 -16.85805 -16.11915 -14.90047 -14.81760 -14.61020 -13.92588 -13.72815 -13.09579 -12.19733 -11.95188 -11.85000 -11.42969 -11.29830 -11.16999 -11.13511 -10.87285 -10.78026 -10.37667 -10.26669 -9.86308 -9.48303 -9.26112 -8.97000 -8.16400 -7.63096 -6.28623 -3.82321 3.19859 3.26108 3.30277 3.66408 4.14738 4.40722 4.65406 5.01130 5.09202 5.17315 5.22681 5.40522 5.48011 5.79897 5.90509 5.98912 6.05731 6.12185 6.12330 6.22998 6.40009 6.52526 6.65993 6.76515 6.90817 6.97184 7.24506 7.60164 8.18300 8.54449 9.24272 9.48866 10.07180 10.75807 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.055958 B = 0.008297 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.257108 B = 3373.906970 C = 3572.854819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.444 5.444 3 C -0.306 4.306 4 H 0.098 0.902 5 C 0.029 3.971 6 N -0.882 5.882 7 Si 0.926 3.074 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.475 3.525 12 O -0.585 6.585 13 C -0.139 4.139 14 H 0.110 0.890 15 C -0.150 4.150 16 C -0.130 4.130 17 C -0.107 4.107 18 C -0.137 4.137 19 C -0.101 4.101 20 H 0.054 0.946 21 H 0.068 0.932 22 H 0.029 0.971 23 H 0.267 0.733 24 H 0.094 0.906 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.101 0.899 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.305 -9.455 -1.639 9.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.162 5.162 3 C -0.434 4.434 4 H 0.116 0.884 5 C -0.174 4.174 6 N -0.521 5.521 7 Si 0.752 3.248 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.263 3.737 12 O -0.470 6.470 13 C -0.160 4.160 14 H 0.128 0.872 15 C -0.188 4.188 16 C -0.131 4.131 17 C -0.144 4.144 18 C -0.174 4.174 19 C -0.138 4.138 20 H 0.072 0.928 21 H 0.086 0.914 22 H 0.047 0.953 23 H 0.077 0.923 24 H 0.113 0.887 25 H 0.111 0.889 26 H 0.090 0.910 27 H 0.119 0.881 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.868 -9.269 -1.542 9.436 hybrid contribution -0.105 0.966 -0.067 0.974 sum -0.973 -8.302 -1.609 8.513 Atomic orbital electron populations 1.21461 0.81248 0.99044 1.01273 1.43526 1.05490 1.04615 1.62585 1.19610 0.99195 0.83665 1.40946 0.88419 1.25317 0.96647 1.00004 0.95388 1.70014 1.18800 1.29274 1.34049 0.86012 0.78965 0.80990 0.78808 1.19960 1.20968 1.19810 1.19163 0.87357 0.83659 0.83494 1.90423 1.13815 1.86684 1.56071 1.22101 1.00409 0.90982 1.02511 0.87179 1.22760 1.02084 1.02406 0.91549 1.22027 0.96348 0.94809 0.99868 1.22576 0.94048 1.01788 0.95961 1.22719 0.96740 0.99825 0.98147 1.22497 0.97929 0.95696 0.97663 0.92759 0.91361 0.95280 0.92262 0.88718 0.88872 0.90954 0.88098 0.90321 0.92035 0.91856 0.90112 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.62 8.29 59.85 0.50 3.12 16 2 N -0.44 -11.78 3.02 -122.19 -0.37 -12.15 16 3 C -0.31 -8.76 9.29 -14.94 -0.14 -8.90 16 4 H 0.10 2.91 7.41 -52.49 -0.39 2.52 16 5 C 0.03 0.80 5.03 -17.47 -0.09 0.71 16 6 N -0.88 -24.01 10.77 55.50 0.60 -23.41 16 7 Si 0.93 21.10 29.58 -169.99 -5.03 16.07 16 8 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 9 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 C 0.48 11.99 7.41 -10.99 -0.08 11.91 16 12 O -0.58 -16.34 13.80 5.54 0.08 -16.26 16 13 C -0.14 -2.74 4.80 -91.92 -0.44 -3.18 16 14 H 0.11 2.02 7.26 -51.93 -0.38 1.65 16 15 C -0.15 -2.51 10.23 -26.94 -0.28 -2.79 16 16 C -0.13 -2.25 2.88 -154.73 -0.45 -2.69 16 17 C -0.11 -1.85 7.64 -26.14 -0.20 -2.05 16 18 C -0.14 -2.01 8.08 -25.81 -0.21 -2.22 16 19 C -0.10 -1.40 8.10 -26.14 -0.21 -1.61 16 20 H 0.05 1.29 7.63 -51.93 -0.40 0.90 16 21 H 0.07 1.64 7.00 -51.93 -0.36 1.28 16 22 H 0.03 0.56 6.61 -51.93 -0.34 0.22 16 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.09 1.66 8.14 -51.93 -0.42 1.24 16 25 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.10 2.12 5.84 -51.93 -0.30 1.82 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 257.27 15.07 3.88 3.88 Total: -1.00 -30.57 257.27 -6.71 -37.28 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.27 Total: 2.30 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -1.59 Total: -7.70 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: 0.23 Total: -35.56 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.08 Total: -16.26 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -30.57 -6.71 -37.28 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751295.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.645 kcal (2) G-P(sol) polarization free energy of solvation -30.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds