Wall clock time and date at job start Sun Mar 29 2020 21:54:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37092 * 120.00454 * 2 1 4 4 H 1.07995 * 120.00452 * 201.70191 * 3 2 1 5 5 C 1.38951 * 119.99786 * 21.70258 * 3 2 1 6 6 N 1.31410 * 120.00266 * 14.83637 * 5 3 2 7 7 Si 1.86807 * 119.99976 * 194.83634 * 5 3 2 8 8 H 1.48503 * 109.46864 * 59.99999 * 7 5 3 9 9 H 1.48493 * 109.46887 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.46810 * 300.00100 * 7 5 3 11 11 C 1.34776 * 119.99304 * 180.02562 * 2 1 3 12 12 O 1.21296 * 119.99592 * 179.97438 * 11 2 1 13 13 C 1.50698 * 120.00673 * 359.97438 * 11 2 1 14 14 H 1.09003 * 115.57632 * 325.63034 * 13 11 2 15 15 C 1.53120 * 117.51288 * 111.38770 * 13 11 2 16 16 C 1.52463 * 59.90994 * 107.47529 * 15 13 11 17 17 C 1.53261 * 128.58324 * 242.37930 * 16 15 13 18 18 C 1.53883 * 86.88136 * 194.88848 * 17 16 15 19 19 C 1.53256 * 128.58505 * 117.58557 * 16 15 13 20 20 H 1.09002 * 109.46991 * 270.61558 * 1 2 3 21 21 H 1.09005 * 109.46589 * 30.61375 * 1 2 3 22 22 H 1.08995 * 109.47719 * 150.61135 * 1 2 3 23 23 H 0.97003 * 120.00267 * 179.97438 * 6 5 3 24 24 H 1.09001 * 117.51612 * 0.02562 * 15 13 11 25 25 H 1.09001 * 117.51423 * 214.94318 * 15 13 11 26 26 H 1.08998 * 113.64306 * 309.38627 * 17 16 15 27 27 H 1.09001 * 113.64447 * 80.38875 * 17 16 15 28 28 H 1.08997 * 113.59183 * 270.39325 * 18 17 16 29 29 H 1.09004 * 113.58927 * 139.57290 * 18 17 16 30 30 H 1.09003 * 113.64189 * 279.60276 * 19 16 15 31 31 H 1.08994 * 113.64829 * 50.61174 * 19 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1506 1.1872 0.0000 4 1 3.1731 1.2203 -0.3458 5 6 1.5298 2.3479 0.4450 6 7 0.4105 2.2735 1.1296 7 14 2.2862 4.0144 0.0701 8 1 2.3767 4.1972 -1.4008 9 1 1.4366 5.0853 0.6502 10 1 3.6461 4.0851 0.6624 11 6 2.1388 -1.1673 -0.0005 12 8 3.3517 -1.1673 -0.0010 13 6 1.3853 -2.4724 -0.0005 14 1 0.4474 -2.4742 0.5549 15 6 1.4600 -3.3323 -1.2653 16 6 2.2041 -3.7598 -0.0051 17 6 3.7127 -3.9346 0.2012 18 6 3.3628 -4.7004 1.4892 19 6 2.0050 -5.0223 0.8405 20 1 -0.3633 0.0110 1.0276 21 1 -0.3633 0.8845 -0.5234 22 1 -0.3634 -0.8953 -0.5043 23 1 -0.0227 3.0837 1.4405 24 1 2.0545 -2.9541 -2.0969 25 1 0.5711 -3.8992 -1.5420 26 1 4.1892 -4.5531 -0.5595 27 1 4.2410 -2.9979 0.3792 28 1 3.2854 -4.0618 2.3691 29 1 3.9854 -5.5794 1.6569 30 1 1.1642 -4.9576 1.5313 31 1 2.0062 -5.9435 0.2579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307751295.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:25 Heat of formation + Delta-G solvation = 1.922401 kcal Electronic energy + Delta-G solvation = -13940.059047 eV Core-core repulsion = 11608.733777 eV Total energy + Delta-G solvation = -2331.325269 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -41.10836 -39.18925 -36.58181 -34.53834 -33.48203 -28.41822 -26.83835 -26.46248 -24.51456 -23.50949 -20.83677 -18.93690 -18.84898 -17.97074 -16.72405 -16.21230 -16.01372 -15.74444 -15.58476 -14.82341 -13.78046 -13.70255 -13.31590 -13.21548 -13.04035 -12.81790 -12.62127 -12.43883 -12.32835 -12.22361 -12.08622 -11.16482 -11.03968 -10.84715 -10.60047 -10.07880 -9.69715 -8.35510 -5.98704 1.36265 1.38461 1.49615 1.89831 2.26042 2.82359 2.99571 3.17715 3.64013 3.75011 3.92970 4.01766 4.09458 4.33719 4.54958 4.65008 4.73001 4.84361 4.88494 4.92909 5.00517 5.08187 5.14090 5.33578 5.39593 5.43053 5.49147 5.61888 6.08532 6.48879 7.16718 7.47934 8.06640 8.67173 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.055958 B = 0.008297 C = 0.007835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.257108 B = 3373.906970 C = 3572.854819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.125 3.875 2 N -0.464 5.464 3 C -0.348 4.348 4 H 0.070 0.930 5 C -0.004 4.004 6 N -0.896 5.896 7 Si 0.990 3.010 8 H -0.267 1.267 9 H -0.268 1.268 10 H -0.277 1.277 11 C 0.463 3.537 12 O -0.625 6.625 13 C -0.164 4.164 14 H 0.127 0.873 15 C -0.127 4.127 16 C -0.137 4.137 17 C -0.120 4.120 18 C -0.133 4.133 19 C -0.079 4.079 20 H 0.042 0.958 21 H 0.052 0.948 22 H 0.068 0.932 23 H 0.274 0.726 24 H 0.079 0.921 25 H 0.135 0.865 26 H 0.092 0.908 27 H 0.052 0.948 28 H 0.059 0.941 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 -11.003 -1.938 11.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.018 4.018 2 N -0.182 5.182 3 C -0.476 4.476 4 H 0.088 0.912 5 C -0.205 4.205 6 N -0.535 5.535 7 Si 0.813 3.187 8 H -0.192 1.192 9 H -0.192 1.192 10 H -0.202 1.202 11 C 0.253 3.747 12 O -0.513 6.513 13 C -0.185 4.185 14 H 0.145 0.855 15 C -0.165 4.165 16 C -0.137 4.137 17 C -0.157 4.157 18 C -0.170 4.170 19 C -0.116 4.116 20 H 0.061 0.939 21 H 0.071 0.929 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.098 0.902 25 H 0.153 0.847 26 H 0.111 0.889 27 H 0.071 0.929 28 H 0.078 0.922 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -2.090 -10.827 -1.838 11.179 hybrid contribution 0.326 1.431 0.037 1.469 sum -1.764 -9.396 -1.800 9.728 Atomic orbital electron populations 1.21386 0.79454 1.00170 1.00763 1.43820 1.06757 1.04595 1.63007 1.19578 0.98934 0.85737 1.43328 0.91228 1.26099 0.97052 1.02903 0.94481 1.70082 1.19302 1.30497 1.33617 0.85060 0.78002 0.76722 0.78916 1.19197 1.19197 1.20238 1.20190 0.87391 0.85293 0.81800 1.90401 1.15834 1.87668 1.57376 1.21978 1.01266 0.89013 1.06197 0.85533 1.22873 1.03106 1.00481 0.90001 1.22332 0.96169 0.94760 1.00473 1.22647 0.94113 1.00484 0.98484 1.22688 0.98148 1.00079 0.96084 1.22504 0.97394 0.94800 0.96923 0.93917 0.92906 0.91381 0.91644 0.90235 0.84714 0.88918 0.92887 0.92191 0.89102 0.90671 0.86830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.80 8.29 127.77 1.06 6.86 16 2 N -0.46 -25.30 3.02 -658.89 -1.99 -27.29 16 3 C -0.35 -20.69 9.29 84.04 0.78 -19.91 16 4 H 0.07 4.41 7.41 -2.91 -0.02 4.39 16 5 C 0.00 -0.20 5.03 84.93 0.43 0.23 16 6 N -0.90 -49.05 10.77 21.66 0.23 -48.82 16 7 Si 0.99 43.67 29.58 68.60 2.03 45.70 16 8 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 9 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 C 0.46 24.07 7.41 87.66 0.65 24.72 16 12 O -0.63 -36.83 13.80 -3.08 -0.04 -36.88 16 13 C -0.16 -6.29 4.80 -11.64 -0.06 -6.35 16 14 H 0.13 4.39 7.26 -2.39 -0.02 4.37 16 15 C -0.13 -3.92 10.23 30.46 0.31 -3.61 16 16 C -0.14 -4.45 2.88 -52.33 -0.15 -4.60 16 17 C -0.12 -4.09 7.64 30.98 0.24 -3.85 16 18 C -0.13 -3.61 8.08 31.19 0.25 -3.36 16 19 C -0.08 -1.88 8.10 30.98 0.25 -1.63 16 20 H 0.04 2.04 7.63 -2.39 -0.02 2.02 16 21 H 0.05 2.56 7.00 -2.38 -0.02 2.54 16 22 H 0.07 2.55 6.61 -2.39 -0.02 2.54 16 23 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 24 H 0.08 2.69 8.14 -2.39 -0.02 2.68 16 25 H 0.13 3.04 8.14 -2.39 -0.02 3.03 16 26 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 27 H 0.05 2.33 5.84 -2.39 -0.01 2.32 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.09 1.94 8.14 -2.38 -0.02 1.92 16 30 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.11 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -69.37 257.27 5.10 -64.27 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.11 Total: 14.51 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 3.76 Total: -11.49 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -1.75 Total: -76.11 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.04 Total: -36.88 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -69.37 5.10 -64.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307751295.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.188 kcal (2) G-P(sol) polarization free energy of solvation -69.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds