Wall clock time and date at job start Sun Mar 29 2020 22:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.46866 * 2 1 4 4 C 1.36934 * 119.99896 * 266.13366 * 3 2 1 5 5 H 1.07995 * 120.00091 * 146.04739 * 4 3 2 6 6 C 1.38818 * 120.00120 * 326.05516 * 4 3 2 7 7 N 1.31619 * 119.99764 * 337.74789 * 6 4 3 8 8 Si 1.86798 * 119.99970 * 157.75326 * 6 4 3 9 9 H 1.48503 * 109.47289 * 59.99769 * 8 6 4 10 10 H 1.48501 * 109.47012 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47224 * 299.99610 * 8 6 4 12 12 C 1.46500 * 119.99964 * 86.13868 * 3 2 1 13 13 C 1.50700 * 109.47100 * 89.99713 * 12 3 2 14 14 C 1.34673 * 126.58654 * 94.95979 * 13 12 3 15 15 N 1.34133 * 108.01578 * 180.02562 * 14 13 12 16 16 C 1.30505 * 109.25726 * 359.72598 * 15 14 13 17 17 N 1.35044 * 108.69638 * 0.43960 * 16 15 14 18 18 C 1.46501 * 126.39282 * 179.82476 * 17 16 15 19 19 H 1.08995 * 109.47587 * 299.99868 * 1 2 3 20 20 H 1.09004 * 109.46972 * 60.00639 * 1 2 3 21 21 H 1.09005 * 109.46848 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47587 * 240.00132 * 2 1 3 23 23 H 1.09004 * 109.46972 * 119.99360 * 2 1 3 24 24 H 0.97003 * 119.99742 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.47049 * 329.99607 * 12 3 2 26 26 H 1.08999 * 109.46731 * 210.00017 * 12 3 2 27 27 H 1.08001 * 125.99530 * 0.02911 * 14 13 12 28 28 H 1.07994 * 125.64616 * 180.29243 * 16 15 14 29 29 H 1.08994 * 109.47281 * 269.68937 * 18 17 16 30 30 H 1.08997 * 109.47027 * 149.69132 * 18 17 16 31 31 H 1.08996 * 109.47078 * 29.69268 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3218 2.0002 -1.1832 5 1 2.1494 3.0601 -1.2980 6 6 2.8510 1.2651 -2.2352 7 7 3.4628 0.1240 -1.9985 8 14 2.6950 1.8956 -3.9866 9 1 3.3649 3.2161 -4.0989 10 1 3.3380 0.9341 -4.9179 11 1 1.2586 2.0379 -4.3354 12 6 2.1818 2.1004 1.2658 13 6 3.5744 1.8744 1.7956 14 6 4.6419 2.6752 1.6144 15 7 5.6884 2.1204 2.2440 16 6 5.3084 1.0092 2.8132 17 7 3.9975 0.8156 2.5529 18 6 3.1796 -0.3136 3.0024 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.8329 -0.3894 -2.7336 25 1 1.4538 1.7329 1.9891 26 1 2.0242 3.1663 1.1011 27 1 4.6535 3.6018 1.0596 28 1 5.9386 0.3521 3.3941 29 1 3.2181 -1.1091 2.2582 30 1 2.1479 0.0136 3.1312 31 1 3.5641 -0.6855 3.9520 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308103149.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:12 Heat of formation + Delta-G solvation = 81.832382 kcal Electronic energy + Delta-G solvation = -14223.604932 eV Core-core repulsion = 11928.037571 eV Total energy + Delta-G solvation = -2295.567361 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.19601 -35.95629 -33.28166 -31.64864 -30.58689 -28.24864 -26.40938 -25.28603 -23.34315 -20.84034 -20.47788 -18.94674 -16.69682 -16.26814 -15.26852 -14.71573 -14.04745 -13.74467 -13.35714 -13.21635 -12.59226 -12.48568 -12.23895 -12.09950 -11.62508 -11.34408 -11.00921 -10.81357 -10.62646 -10.05907 -10.04089 -9.65243 -9.20780 -8.78889 -8.49597 -7.49104 -6.67101 -5.80991 -3.33933 2.87834 3.38271 3.43759 3.45484 3.54324 4.00251 4.49675 5.12786 5.31206 5.34418 5.47117 5.55375 5.69643 5.75991 5.98431 6.21063 6.28738 6.46643 6.50176 6.61340 6.69650 6.78315 7.19010 7.23285 7.61540 7.68923 7.79472 7.98241 8.46809 8.87228 9.15124 9.77282 10.32729 11.20386 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031220 B = 0.012177 C = 0.010168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.648515 B = 2298.797986 C = 2753.086842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 N -0.572 5.572 4 C -0.258 4.258 5 H 0.065 0.935 6 C 0.012 3.988 7 N -0.885 5.885 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.291 1.291 11 H -0.283 1.283 12 C 0.209 3.791 13 C 0.000 4.000 14 C -0.037 4.037 15 N -0.499 5.499 16 C 0.148 3.852 17 N -0.455 5.455 18 C 0.080 3.920 19 H 0.032 0.968 20 H 0.051 0.949 21 H 0.034 0.966 22 H 0.099 0.901 23 H 0.019 0.981 24 H 0.254 0.746 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.158 0.842 28 H 0.191 0.809 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 -1.616 8.263 9.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.009 3.991 3 N -0.291 5.291 4 C -0.388 4.388 5 H 0.083 0.917 6 C -0.189 4.189 7 N -0.527 5.527 8 Si 0.729 3.271 9 H -0.206 1.206 10 H -0.217 1.217 11 H -0.209 1.209 12 C 0.080 3.920 13 C -0.118 4.118 14 C -0.184 4.184 15 N -0.218 5.218 16 C -0.133 4.133 17 N -0.140 5.140 18 C -0.063 4.063 19 H 0.051 0.949 20 H 0.070 0.930 21 H 0.053 0.947 22 H 0.116 0.884 23 H 0.037 0.963 24 H 0.064 0.936 25 H 0.059 0.941 26 H 0.088 0.912 27 H 0.176 0.824 28 H 0.207 0.793 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.492 -1.535 8.193 8.700 hybrid contribution -0.624 -0.332 -1.025 1.245 sum -3.116 -1.867 7.168 8.036 Atomic orbital electron populations 1.22312 1.00709 0.98723 1.00545 1.21045 0.89853 0.86415 1.01824 1.44080 1.72868 1.11876 1.00304 1.19058 1.36596 0.94216 0.88907 0.91706 1.25125 0.96604 0.97861 0.99274 1.69987 1.35963 1.15928 1.30802 0.86418 0.77870 0.78259 0.84563 1.20613 1.21707 1.20907 1.19574 0.86525 0.97650 0.88220 1.22925 1.01589 0.89117 0.98169 1.21794 0.88584 1.02370 1.05673 1.70093 1.30542 1.08159 1.12973 1.24535 0.83531 0.98750 1.06493 1.45126 1.10041 1.18716 1.40122 1.21910 0.95865 0.88544 1.00023 0.94918 0.93032 0.94691 0.88390 0.96313 0.93573 0.94107 0.91219 0.82448 0.79266 0.90652 0.90238 0.90620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.24 37.15 0.38 -2.76 16 2 C 0.13 3.03 5.98 -4.04 -0.02 3.01 16 3 N -0.57 -13.71 2.44 -174.61 -0.43 -14.13 16 4 C -0.26 -6.90 9.49 -15.06 -0.14 -7.05 16 5 H 0.07 1.72 7.92 -52.49 -0.42 1.30 16 6 C 0.01 0.32 4.93 -17.43 -0.09 0.24 16 7 N -0.88 -25.49 11.32 55.49 0.63 -24.86 16 8 Si 0.90 21.61 29.61 -169.99 -5.03 16.58 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.21 4.29 5.92 -5.19 -0.03 4.26 16 13 C 0.00 0.00 6.54 -81.60 -0.53 -0.54 16 14 C -0.04 -0.82 11.79 -17.81 -0.21 -1.03 16 15 N -0.50 -10.93 11.25 -14.66 -0.16 -11.10 16 16 C 0.15 2.78 12.56 -90.37 -1.14 1.64 16 17 N -0.46 -8.48 3.15 -121.37 -0.38 -8.86 16 18 C 0.08 1.12 9.76 59.85 0.58 1.71 16 19 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 20 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 21 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.10 2.57 5.32 -51.93 -0.28 2.30 16 23 H 0.02 0.39 5.63 -51.93 -0.29 0.10 16 24 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.04 0.74 7.31 -51.93 -0.38 0.36 16 26 H 0.07 1.39 8.04 -51.93 -0.42 0.97 16 27 H 0.16 3.37 8.06 -52.49 -0.42 2.95 16 28 H 0.19 2.71 8.06 -52.49 -0.42 2.28 16 29 H 0.07 1.14 7.18 -51.93 -0.37 0.76 16 30 H 0.08 1.05 7.27 -51.93 -0.38 0.67 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 261.96 15.07 3.95 3.95 Total: -1.00 -31.56 261.96 -6.83 -38.39 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.20 Total: 0.55 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: -1.20 Total: -0.51 kcal Atomic # 7 Polarization: -58.61 SS G_CDS: -0.34 Total: -58.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -31.56 -6.83 -38.39 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308103149.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.220 kcal (2) G-P(sol) polarization free energy of solvation -31.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.388 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds