Wall clock time and date at job start Sun Mar 29 2020 22:00:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.46866 * 2 1 4 4 C 1.36934 * 119.99896 * 266.13366 * 3 2 1 5 5 H 1.07995 * 120.00091 * 146.04739 * 4 3 2 6 6 C 1.38818 * 120.00120 * 326.05516 * 4 3 2 7 7 N 1.31619 * 119.99764 * 337.74789 * 6 4 3 8 8 Si 1.86798 * 119.99970 * 157.75326 * 6 4 3 9 9 H 1.48503 * 109.47289 * 59.99769 * 8 6 4 10 10 H 1.48501 * 109.47012 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47224 * 299.99610 * 8 6 4 12 12 C 1.46500 * 119.99964 * 86.13868 * 3 2 1 13 13 C 1.50700 * 109.47100 * 89.99713 * 12 3 2 14 14 C 1.34673 * 126.58654 * 94.95979 * 13 12 3 15 15 N 1.34133 * 108.01578 * 180.02562 * 14 13 12 16 16 C 1.30505 * 109.25726 * 359.72598 * 15 14 13 17 17 N 1.35044 * 108.69638 * 0.43960 * 16 15 14 18 18 C 1.46501 * 126.39282 * 179.82476 * 17 16 15 19 19 H 1.08995 * 109.47587 * 299.99868 * 1 2 3 20 20 H 1.09004 * 109.46972 * 60.00639 * 1 2 3 21 21 H 1.09005 * 109.46848 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47587 * 240.00132 * 2 1 3 23 23 H 1.09004 * 109.46972 * 119.99360 * 2 1 3 24 24 H 0.97003 * 119.99742 * 180.02562 * 7 6 4 25 25 H 1.09001 * 109.47049 * 329.99607 * 12 3 2 26 26 H 1.08999 * 109.46731 * 210.00017 * 12 3 2 27 27 H 1.08001 * 125.99530 * 0.02911 * 14 13 12 28 28 H 1.07994 * 125.64616 * 180.29243 * 16 15 14 29 29 H 1.08994 * 109.47281 * 269.68937 * 18 17 16 30 30 H 1.08997 * 109.47027 * 149.69132 * 18 17 16 31 31 H 1.08996 * 109.47078 * 29.69268 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3218 2.0002 -1.1832 5 1 2.1494 3.0601 -1.2980 6 6 2.8510 1.2651 -2.2352 7 7 3.4628 0.1240 -1.9985 8 14 2.6950 1.8956 -3.9866 9 1 3.3649 3.2161 -4.0989 10 1 3.3380 0.9341 -4.9179 11 1 1.2586 2.0379 -4.3354 12 6 2.1818 2.1004 1.2658 13 6 3.5744 1.8744 1.7956 14 6 4.6419 2.6752 1.6144 15 7 5.6884 2.1204 2.2440 16 6 5.3084 1.0092 2.8132 17 7 3.9975 0.8156 2.5529 18 6 3.1796 -0.3136 3.0024 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8901 24 1 3.8329 -0.3894 -2.7336 25 1 1.4538 1.7329 1.9891 26 1 2.0242 3.1663 1.1011 27 1 4.6535 3.6018 1.0596 28 1 5.9386 0.3521 3.3941 29 1 3.2181 -1.1091 2.2582 30 1 2.1479 0.0136 3.1312 31 1 3.5641 -0.6855 3.9520 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308103149.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:12 Heat of formation + Delta-G solvation = 63.465130 kcal Electronic energy + Delta-G solvation = -14224.401396 eV Core-core repulsion = 11928.037571 eV Total energy + Delta-G solvation = -2296.363825 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.71907 -37.76430 -34.72632 -33.59092 -32.22249 -29.97989 -27.68833 -27.09562 -25.09324 -22.58218 -22.02297 -20.53640 -18.57708 -17.79008 -16.87752 -16.50970 -15.75649 -15.40457 -14.96457 -14.81781 -14.17052 -14.03583 -13.64984 -13.49353 -13.23476 -13.08654 -12.69894 -12.64049 -12.42193 -11.99842 -11.82947 -11.42710 -10.81809 -10.48401 -10.27085 -9.11169 -8.60793 -7.83861 -5.39306 1.33707 1.46737 1.48279 1.54533 2.18851 2.38055 2.53828 3.26268 3.80512 3.98290 4.07829 4.18793 4.36562 4.46383 4.52288 4.70096 4.73939 4.87372 4.96869 5.02041 5.14012 5.18199 5.54108 5.66273 5.68321 5.87806 6.01497 6.45214 6.57633 7.16897 7.31931 7.85663 8.34820 9.13373 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031220 B = 0.012177 C = 0.010168 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 896.648515 B = 2298.797986 C = 2753.086842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.132 3.868 3 N -0.585 5.585 4 C -0.261 4.261 5 H 0.061 0.939 6 C -0.037 4.037 7 N -0.915 5.915 8 Si 0.954 3.046 9 H -0.279 1.279 10 H -0.297 1.297 11 H -0.276 1.276 12 C 0.211 3.789 13 C -0.013 4.013 14 C -0.067 4.067 15 N -0.537 5.537 16 C 0.159 3.841 17 N -0.456 5.456 18 C 0.074 3.926 19 H 0.052 0.948 20 H 0.031 0.969 21 H 0.058 0.942 22 H 0.061 0.939 23 H 0.035 0.965 24 H 0.247 0.753 25 H 0.070 0.930 26 H 0.069 0.931 27 H 0.149 0.851 28 H 0.235 0.765 29 H 0.064 0.936 30 H 0.090 0.910 31 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.095 -2.319 9.696 10.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.007 3.993 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.079 0.921 6 C -0.234 4.234 7 N -0.559 5.559 8 Si 0.783 3.217 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.202 1.202 12 C 0.083 3.917 13 C -0.131 4.131 14 C -0.214 4.214 15 N -0.256 5.256 16 C -0.123 4.123 17 N -0.140 5.140 18 C -0.068 4.068 19 H 0.071 0.929 20 H 0.050 0.950 21 H 0.077 0.923 22 H 0.079 0.921 23 H 0.053 0.947 24 H 0.057 0.943 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.167 0.833 28 H 0.251 0.749 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -3.349 -2.236 9.646 10.453 hybrid contribution -0.353 -0.128 -1.345 1.396 sum -3.701 -2.364 8.301 9.391 Atomic orbital electron populations 1.22133 0.97990 1.00295 1.00528 1.21014 0.91935 0.85599 1.00787 1.44228 1.73217 1.12364 1.00671 1.19288 1.35297 0.94181 0.90354 0.92138 1.25733 0.97070 0.98336 1.02285 1.70127 1.37604 1.17156 1.31051 0.85550 0.77910 0.77419 0.80846 1.20494 1.22328 1.20156 1.19617 0.87098 0.97501 0.87435 1.22858 1.01283 0.90046 0.98957 1.21916 0.89683 1.03045 1.06749 1.70050 1.31082 1.09997 1.14493 1.25413 0.83933 0.97972 1.04940 1.45377 1.10452 1.18935 1.39197 1.22220 0.96253 0.86681 1.01617 0.92883 0.94982 0.92341 0.92126 0.94712 0.94343 0.91196 0.91228 0.83315 0.74881 0.91715 0.89146 0.86252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 10.24 71.98 0.74 -4.69 16 2 C 0.13 5.80 5.98 86.38 0.52 6.32 16 3 N -0.58 -27.59 2.44 -706.34 -1.72 -29.31 16 4 C -0.26 -13.99 9.49 84.04 0.80 -13.19 16 5 H 0.06 3.23 7.92 -2.91 -0.02 3.20 16 6 C -0.04 -2.05 4.93 84.86 0.42 -1.63 16 7 N -0.92 -53.60 11.32 21.65 0.25 -53.35 16 8 Si 0.95 44.98 29.61 68.60 2.03 47.01 16 9 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 C 0.21 8.39 5.92 85.63 0.51 8.90 16 13 C -0.01 -0.52 6.54 40.95 0.27 -0.25 16 14 C -0.07 -3.01 11.79 83.52 0.98 -2.02 16 15 N -0.54 -23.18 11.25 -200.30 -2.25 -25.44 16 16 C 0.16 5.59 12.56 180.26 2.26 7.86 16 17 N -0.46 -15.87 3.15 -537.90 -1.70 -17.57 16 18 C 0.07 1.80 9.76 127.77 1.25 3.05 16 19 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 20 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 21 H 0.06 1.82 8.14 -2.38 -0.02 1.80 16 22 H 0.06 3.20 5.32 -2.39 -0.01 3.18 16 23 H 0.03 1.38 5.63 -2.39 -0.01 1.37 16 24 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 25 H 0.07 2.34 7.31 -2.39 -0.02 2.33 16 26 H 0.07 2.73 8.04 -2.39 -0.02 2.71 16 27 H 0.15 6.63 8.06 -2.91 -0.02 6.61 16 28 H 0.24 5.71 8.06 -2.91 -0.02 5.69 16 29 H 0.06 1.76 7.18 -2.39 -0.02 1.74 16 30 H 0.09 2.02 7.27 -2.39 -0.02 2.01 16 31 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 Total: -1.00 -68.42 261.96 5.45 -62.97 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: 1.11 Total: 11.33 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 7.74 Total: 4.34 kcal Atomic # 7 Polarization: -120.24 SS G_CDS: -5.42 Total: -125.66 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -68.42 5.45 -62.97 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308103149.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.437 kcal (2) G-P(sol) polarization free energy of solvation -68.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.972 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds