Wall clock time and date at job start Sun Mar 29 2020 22:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46496 * 109.47170 * 2 1 4 4 C 1.36942 * 119.99931 * 274.13087 * 3 2 1 5 5 H 1.07994 * 119.99714 * 38.78509 * 4 3 2 6 6 C 1.38813 * 120.00046 * 218.77432 * 4 3 2 7 7 N 1.31622 * 119.99915 * 18.89361 * 6 4 3 8 8 Si 1.86799 * 119.99979 * 198.88980 * 6 4 3 9 9 H 1.48499 * 109.47186 * 60.00182 * 8 6 4 10 10 H 1.48499 * 109.46902 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47182 * 300.00058 * 8 6 4 12 12 C 1.46504 * 120.00273 * 94.13463 * 3 2 1 13 13 C 1.50694 * 109.46853 * 270.00025 * 12 3 2 14 14 N 1.30840 * 125.90279 * 90.02829 * 13 12 3 15 15 N 1.40081 * 108.21071 * 179.97438 * 14 13 12 16 16 H 0.96996 * 126.04221 * 180.02562 * 15 14 13 17 17 C 1.34950 * 107.92251 * 0.25318 * 15 14 13 18 18 C 1.35313 * 107.74407 * 359.58591 * 17 15 14 19 19 C 1.50710 * 126.03668 * 180.15969 * 18 17 15 20 20 H 1.09002 * 109.47524 * 300.00257 * 1 2 3 21 21 H 1.09006 * 109.47220 * 59.99943 * 1 2 3 22 22 H 1.08998 * 109.47386 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47524 * 239.99743 * 2 1 3 24 24 H 1.09006 * 109.47220 * 120.00057 * 2 1 3 25 25 H 0.96999 * 120.00013 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47473 * 150.00070 * 12 3 2 27 27 H 1.09001 * 109.46814 * 29.99763 * 12 3 2 28 28 H 1.08004 * 126.12570 * 179.73863 * 17 15 14 29 29 H 1.08995 * 109.46792 * 270.30272 * 19 18 17 30 30 H 1.08996 * 109.47139 * 30.30558 * 19 18 17 31 31 H 1.09002 * 109.46536 * 150.30326 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1659 2.0552 -1.1829 5 1 1.4380 1.9292 -1.9706 6 6 3.2511 2.9005 -1.3693 7 7 4.3141 2.7858 -0.6015 8 14 3.2029 4.2006 -2.7097 9 1 2.0669 5.1245 -2.4625 10 1 4.4751 4.9665 -2.7023 11 1 3.0287 3.5440 -4.0302 12 6 2.3487 2.0414 1.2654 13 6 1.1259 2.7400 1.8017 14 7 0.2337 2.2179 2.6037 15 7 -0.7405 3.1895 2.8666 16 1 -1.5208 3.0770 3.4317 17 6 -0.4044 4.3082 2.1908 18 6 0.7491 4.0590 1.5286 19 6 1.4929 5.0294 0.6475 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 5.0723 3.3767 -0.7315 26 1 3.1405 2.7716 1.0984 27 1 2.6871 1.2969 1.9861 28 1 -0.9559 5.2368 2.1821 29 1 1.1313 4.9406 -0.3769 30 1 1.3266 6.0456 1.0048 31 1 2.5589 4.8036 0.6774 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308168743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:08 Heat of formation + Delta-G solvation = 87.950849 kcal Electronic energy + Delta-G solvation = -14352.877284 eV Core-core repulsion = 12057.575240 eV Total energy + Delta-G solvation = -2295.302045 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.37553 -35.82266 -31.99759 -31.71464 -30.68842 -28.75068 -25.96533 -25.49745 -23.50645 -20.55656 -20.06819 -18.55494 -17.04669 -16.47194 -14.81887 -14.18932 -13.86913 -13.52787 -13.30575 -12.52599 -12.27025 -12.20740 -12.00069 -11.78180 -11.32145 -10.93996 -10.80967 -10.54563 -10.51145 -10.11624 -9.99894 -9.75609 -9.57007 -8.52273 -8.41847 -7.61906 -6.51277 -5.74986 -3.33660 2.60508 3.38320 3.44861 3.46629 3.59983 3.64960 4.52869 5.35964 5.44509 5.67188 5.73286 6.07374 6.20322 6.23735 6.48040 6.51793 6.57165 6.61401 6.80361 6.83716 6.99553 7.03452 7.13211 7.31686 7.49595 7.69353 7.87902 7.98530 8.51836 8.63577 9.24123 9.85540 10.46172 11.26543 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.014850 C = 0.011367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.664594 B = 1885.046064 C = 2462.666922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.145 3.855 3 N -0.571 5.571 4 C -0.252 4.252 5 H 0.056 0.944 6 C 0.021 3.979 7 N -0.889 5.889 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.283 1.283 12 C 0.212 3.788 13 C 0.094 3.906 14 N -0.310 5.310 15 N -0.499 5.499 16 H 0.427 0.573 17 C 0.025 3.975 18 C -0.209 4.209 19 C -0.070 4.070 20 H 0.053 0.947 21 H 0.043 0.957 22 H 0.032 0.968 23 H 0.044 0.956 24 H 0.035 0.965 25 H 0.256 0.744 26 H 0.116 0.884 27 H 0.037 0.963 28 H 0.161 0.839 29 H 0.062 0.938 30 H 0.040 0.960 31 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.690 2.806 4.392 8.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.019 3.981 3 N -0.291 5.291 4 C -0.382 4.382 5 H 0.073 0.927 6 C -0.179 4.179 7 N -0.532 5.532 8 Si 0.717 3.283 9 H -0.203 1.203 10 H -0.215 1.215 11 H -0.209 1.209 12 C 0.084 3.916 13 C -0.076 4.076 14 N -0.134 5.134 15 N -0.206 5.206 16 H 0.268 0.732 17 C -0.121 4.121 18 C -0.221 4.221 19 C -0.128 4.128 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.063 0.937 24 H 0.053 0.947 25 H 0.066 0.934 26 H 0.133 0.867 27 H 0.056 0.944 28 H 0.178 0.822 29 H 0.081 0.919 30 H 0.059 0.941 31 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.831 1.851 5.006 8.668 hybrid contribution -0.548 1.541 -0.854 1.845 sum -7.379 3.392 4.151 9.121 Atomic orbital electron populations 1.22332 1.00194 0.98742 1.01554 1.20839 0.91652 0.86914 0.98683 1.43627 1.75841 1.08047 1.01631 1.18903 1.03784 1.22375 0.93090 0.92677 1.25104 0.94205 1.00939 0.97624 1.69924 1.04017 1.38330 1.40926 0.86658 0.77061 0.82404 0.82185 1.20341 1.21511 1.20932 1.19574 0.89837 0.96497 0.85740 1.24104 0.98010 0.92903 0.92624 1.77238 1.00865 1.12905 1.22361 1.46164 1.23263 1.09898 1.41280 0.73184 1.22120 0.98509 0.92571 0.98869 1.20096 0.98394 0.97065 1.06563 1.20081 1.00504 0.94427 0.97769 0.92754 0.93819 0.94917 0.93732 0.94705 0.93384 0.86682 0.94411 0.82179 0.91881 0.94059 0.91018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.47 10.22 37.15 0.38 -3.09 16 2 C 0.15 3.27 6.43 -4.05 -0.03 3.25 16 3 N -0.57 -14.45 2.41 -174.62 -0.42 -14.87 16 4 C -0.25 -6.78 9.47 -15.06 -0.14 -6.92 16 5 H 0.06 1.52 7.90 -52.49 -0.41 1.11 16 6 C 0.02 0.56 4.92 -17.43 -0.09 0.48 16 7 N -0.89 -24.54 11.40 55.49 0.63 -23.90 16 8 Si 0.89 20.92 29.20 -169.99 -4.96 15.96 16 9 H -0.28 -6.35 6.74 56.52 0.38 -5.97 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 C 0.21 5.17 5.70 -5.19 -0.03 5.14 16 13 C 0.09 2.09 6.62 -82.41 -0.55 1.55 16 14 N -0.31 -6.48 11.65 33.67 0.39 -6.09 16 15 N -0.50 -8.34 7.36 30.45 0.22 -8.11 16 16 H 0.43 5.35 8.96 -182.62 -1.64 3.71 16 17 C 0.03 0.42 11.90 -17.22 -0.21 0.21 16 18 C -0.21 -4.28 6.10 -105.05 -0.64 -4.92 16 19 C -0.07 -1.39 10.18 36.01 0.37 -1.02 16 20 H 0.05 1.17 6.87 -51.93 -0.36 0.81 16 21 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 22 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.04 1.00 8.07 -51.93 -0.42 0.58 16 24 H 0.03 0.75 7.85 -51.93 -0.41 0.34 16 25 H 0.26 6.83 8.31 -40.82 -0.34 6.50 16 26 H 0.12 3.02 4.62 -51.93 -0.24 2.79 16 27 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 28 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 29 H 0.06 1.34 7.37 -51.93 -0.38 0.96 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.07 1.56 7.16 -51.93 -0.37 1.19 16 LS Contribution 261.95 15.07 3.95 3.95 Total: -1.00 -29.53 261.95 -6.60 -36.13 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -5.48 Total: 2.27 kcal Atomic # 6 Polarization: -4.39 SS G_CDS: -0.93 Total: -5.32 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.83 Total: -52.98 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -4.96 Total: 15.96 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.53 -6.60 -36.13 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308168743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.076 kcal (2) G-P(sol) polarization free energy of solvation -29.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.126 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds