Wall clock time and date at job start Sun Mar 29 2020 22:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46496 * 109.47170 * 2 1 4 4 C 1.36942 * 119.99931 * 274.13087 * 3 2 1 5 5 H 1.07994 * 119.99714 * 38.78509 * 4 3 2 6 6 C 1.38813 * 120.00046 * 218.77432 * 4 3 2 7 7 N 1.31622 * 119.99915 * 18.89361 * 6 4 3 8 8 Si 1.86799 * 119.99979 * 198.88980 * 6 4 3 9 9 H 1.48499 * 109.47186 * 60.00182 * 8 6 4 10 10 H 1.48499 * 109.46902 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47182 * 300.00058 * 8 6 4 12 12 C 1.46504 * 120.00273 * 94.13463 * 3 2 1 13 13 C 1.50694 * 109.46853 * 270.00025 * 12 3 2 14 14 N 1.30840 * 125.90279 * 90.02829 * 13 12 3 15 15 N 1.40081 * 108.21071 * 179.97438 * 14 13 12 16 16 H 0.96996 * 126.04221 * 180.02562 * 15 14 13 17 17 C 1.34950 * 107.92251 * 0.25318 * 15 14 13 18 18 C 1.35313 * 107.74407 * 359.58591 * 17 15 14 19 19 C 1.50710 * 126.03668 * 180.15969 * 18 17 15 20 20 H 1.09002 * 109.47524 * 300.00257 * 1 2 3 21 21 H 1.09006 * 109.47220 * 59.99943 * 1 2 3 22 22 H 1.08998 * 109.47386 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47524 * 239.99743 * 2 1 3 24 24 H 1.09006 * 109.47220 * 120.00057 * 2 1 3 25 25 H 0.96999 * 120.00013 * 180.02562 * 7 6 4 26 26 H 1.08998 * 109.47473 * 150.00070 * 12 3 2 27 27 H 1.09001 * 109.46814 * 29.99763 * 12 3 2 28 28 H 1.08004 * 126.12570 * 179.73863 * 17 15 14 29 29 H 1.08995 * 109.46792 * 270.30272 * 19 18 17 30 30 H 1.08996 * 109.47139 * 30.30558 * 19 18 17 31 31 H 1.09002 * 109.46536 * 150.30326 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1659 2.0552 -1.1829 5 1 1.4380 1.9292 -1.9706 6 6 3.2511 2.9005 -1.3693 7 7 4.3141 2.7858 -0.6015 8 14 3.2029 4.2006 -2.7097 9 1 2.0669 5.1245 -2.4625 10 1 4.4751 4.9665 -2.7023 11 1 3.0287 3.5440 -4.0302 12 6 2.3487 2.0414 1.2654 13 6 1.1259 2.7400 1.8017 14 7 0.2337 2.2179 2.6037 15 7 -0.7405 3.1895 2.8666 16 1 -1.5208 3.0770 3.4317 17 6 -0.4044 4.3082 2.1908 18 6 0.7491 4.0590 1.5286 19 6 1.4929 5.0294 0.6475 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 5.0723 3.3767 -0.7315 26 1 3.1405 2.7716 1.0984 27 1 2.6871 1.2969 1.9861 28 1 -0.9559 5.2368 2.1821 29 1 1.1313 4.9406 -0.3769 30 1 1.3266 6.0456 1.0048 31 1 2.5589 4.8036 0.6774 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308168743.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:07 Heat of formation + Delta-G solvation = 69.461310 kcal Electronic energy + Delta-G solvation = -14353.679051 eV Core-core repulsion = 12057.575240 eV Total energy + Delta-G solvation = -2296.103811 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.87524 -37.70147 -33.82695 -33.41379 -32.25427 -30.55022 -27.83048 -27.02435 -25.38124 -22.35177 -21.62281 -20.19429 -18.51750 -18.36893 -16.79824 -15.87182 -15.65156 -15.25428 -14.95020 -14.19137 -14.08971 -13.73071 -13.56829 -13.46280 -13.15214 -12.73995 -12.52740 -12.36592 -12.29823 -12.06474 -11.83884 -11.55345 -11.20310 -10.43898 -10.06555 -9.10413 -8.50859 -7.76861 -5.40657 1.16824 1.50342 1.52524 1.58899 2.02112 2.29051 2.58004 3.34501 3.88114 4.10046 4.18811 4.44344 4.59144 4.64526 4.77230 4.85170 4.96305 5.02947 5.06560 5.20327 5.27518 5.33931 5.55979 5.58563 5.64600 5.76848 5.99034 6.53801 6.74133 7.03631 7.22983 7.88240 8.45931 9.21896 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.027863 B = 0.014850 C = 0.011367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.664594 B = 1885.046064 C = 2462.666922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.141 3.859 3 N -0.585 5.585 4 C -0.263 4.263 5 H 0.044 0.956 6 C -0.009 4.009 7 N -0.914 5.914 8 Si 0.937 3.063 9 H -0.266 1.266 10 H -0.289 1.289 11 H -0.283 1.283 12 C 0.219 3.781 13 C 0.072 3.928 14 N -0.332 5.332 15 N -0.478 5.478 16 H 0.448 0.552 17 C 0.060 3.940 18 C -0.252 4.252 19 C -0.059 4.059 20 H 0.044 0.956 21 H 0.030 0.970 22 H 0.062 0.938 23 H 0.038 0.962 24 H 0.040 0.960 25 H 0.254 0.746 26 H 0.092 0.908 27 H 0.027 0.973 28 H 0.214 0.786 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.653 3.933 4.883 10.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.015 3.985 3 N -0.307 5.307 4 C -0.393 4.393 5 H 0.062 0.938 6 C -0.207 4.207 7 N -0.558 5.558 8 Si 0.765 3.235 9 H -0.191 1.191 10 H -0.215 1.215 11 H -0.210 1.210 12 C 0.091 3.909 13 C -0.097 4.097 14 N -0.157 5.157 15 N -0.187 5.187 16 H 0.294 0.706 17 C -0.087 4.087 18 C -0.264 4.264 19 C -0.117 4.117 20 H 0.063 0.937 21 H 0.049 0.951 22 H 0.081 0.919 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.064 0.936 26 H 0.110 0.890 27 H 0.046 0.954 28 H 0.230 0.770 29 H 0.061 0.939 30 H 0.095 0.905 31 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -8.822 2.955 5.519 10.818 hybrid contribution -0.005 1.164 -0.917 1.482 sum -8.827 4.119 4.602 10.773 Atomic orbital electron populations 1.22131 0.98319 1.00330 1.00331 1.20937 0.93079 0.85850 0.98622 1.43779 1.76356 1.09014 1.01515 1.18952 1.03600 1.23160 0.93577 0.93843 1.25595 0.93685 1.02111 0.99309 1.70035 1.04474 1.38926 1.42323 0.85880 0.77257 0.80524 0.79870 1.19098 1.21509 1.20965 1.19246 0.90691 0.95676 0.85306 1.23667 0.97886 0.94060 0.94071 1.77129 1.01689 1.14274 1.22603 1.46171 1.22854 1.09161 1.40548 0.70624 1.22741 0.96743 0.93621 0.95622 1.20292 1.00608 0.96621 1.08838 1.19925 0.98457 0.96439 0.96865 0.93667 0.95125 0.91875 0.94324 0.94150 0.93621 0.89014 0.95423 0.76966 0.93913 0.90524 0.94016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.10 10.22 71.98 0.74 -5.36 16 2 C 0.14 6.38 6.43 86.38 0.56 6.94 16 3 N -0.59 -30.20 2.41 -706.36 -1.70 -31.90 16 4 C -0.26 -14.42 9.47 84.03 0.80 -13.62 16 5 H 0.04 2.45 7.90 -2.91 -0.02 2.43 16 6 C -0.01 -0.48 4.92 84.86 0.42 -0.06 16 7 N -0.91 -51.70 11.40 21.65 0.25 -51.45 16 8 Si 0.94 43.18 29.20 68.60 2.00 45.18 16 9 H -0.27 -11.66 6.74 99.48 0.67 -10.99 16 10 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.22 10.97 5.70 85.63 0.49 11.46 16 13 C 0.07 3.18 6.62 43.10 0.29 3.46 16 14 N -0.33 -13.39 11.65 -47.39 -0.55 -13.94 16 15 N -0.48 -14.31 7.36 -57.59 -0.42 -14.73 16 16 H 0.45 9.35 8.96 -213.34 -1.91 7.44 16 17 C 0.06 1.77 11.90 83.54 0.99 2.77 16 18 C -0.25 -9.88 6.10 -20.14 -0.12 -10.00 16 19 C -0.06 -2.28 10.18 71.24 0.73 -1.56 16 20 H 0.04 1.89 6.87 -2.39 -0.02 1.87 16 21 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 22 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 23 H 0.04 1.76 8.07 -2.39 -0.02 1.74 16 24 H 0.04 1.75 7.85 -2.38 -0.02 1.73 16 25 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 26 H 0.09 5.03 4.62 -2.39 -0.01 5.02 16 27 H 0.03 1.37 7.86 -2.39 -0.02 1.35 16 28 H 0.21 3.95 8.06 -2.91 -0.02 3.93 16 29 H 0.04 1.78 7.37 -2.39 -0.02 1.76 16 30 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.04 1.83 7.16 -2.39 -0.02 1.82 16 Total: -1.00 -64.40 261.95 3.63 -60.77 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -0.82 Total: 12.06 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 4.87 Total: -5.98 kcal Atomic # 7 Polarization: -109.61 SS G_CDS: -2.43 Total: -112.03 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.00 Total: 45.18 kcal Total: -64.40 3.63 -60.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308168743.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.231 kcal (2) G-P(sol) polarization free energy of solvation -64.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds