Wall clock time and date at job start Sun Mar 29 2020 21:34:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48497 * 109.47025 * 240.00182 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47148 * 120.00386 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21281 * 120.00220 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00080 * 180.02562 * 12 11 10 15 15 C 1.54639 * 111.03534 * 292.02766 * 14 12 11 16 16 C 1.51104 * 104.72225 * 217.33126 * 15 14 12 17 17 C 1.30525 * 111.10361 * 16.43876 * 16 15 14 18 18 C 1.51098 * 111.10534 * 359.97438 * 17 16 15 19 19 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 21 21 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 22 22 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 23 23 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 24 24 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 25 25 H 1.08998 * 110.90874 * 56.03118 * 14 12 11 26 26 H 1.08996 * 110.38554 * 336.14404 * 15 14 12 27 27 H 1.09002 * 110.38790 * 98.51941 * 15 14 12 28 28 H 1.07999 * 124.44457 * 196.45615 * 16 15 14 29 29 H 1.08000 * 124.44479 * 180.02562 * 17 16 15 30 30 H 1.09001 * 110.38814 * 224.75144 * 18 17 16 31 31 H 1.09001 * 110.48306 * 102.42385 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9309 -0.0020 12 6 2.1864 -6.0980 -0.0076 13 8 3.3993 -6.0981 -0.0117 14 6 1.4329 -7.4032 -0.0087 15 6 0.6912 -7.6170 1.3312 16 6 0.8114 -9.0982 1.6046 17 6 1.7463 -9.6373 0.8703 18 6 2.4049 -8.6056 -0.0157 19 1 -0.4850 0.8400 0.0004 20 1 0.6246 -2.5564 -0.8919 21 1 0.6240 -2.5575 0.8881 22 1 2.8712 -3.6048 0.8890 23 1 2.8725 -3.6040 -0.8909 24 1 0.5425 -4.9308 -0.0028 25 1 0.7429 -7.4532 -0.8509 26 1 1.1695 -7.0442 2.1256 27 1 -0.3567 -7.3325 1.2348 28 1 0.2035 -9.6398 2.3142 29 1 2.0133 -10.6835 0.8925 30 1 2.5224 -8.9935 -1.0275 31 1 3.3722 -8.3136 0.3930 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308190258.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:47 Heat of formation + Delta-G solvation = -39.817645 kcal Electronic energy + Delta-G solvation = -13164.105790 eV Core-core repulsion = 10830.970536 eV Total energy + Delta-G solvation = -2333.135253 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.90153 -37.47002 -34.83834 -32.84857 -30.35005 -28.87231 -28.14304 -24.83716 -22.25680 -20.87143 -19.52771 -18.82840 -17.06260 -16.40851 -16.18238 -15.04414 -14.69105 -14.48528 -13.91166 -13.04244 -12.80531 -12.36488 -12.24814 -12.18814 -11.68736 -11.32775 -11.20165 -11.14991 -11.00520 -10.65298 -10.31946 -9.77897 -9.44883 -9.17427 -8.96172 -8.53774 -8.34924 -6.09466 -4.12406 2.16699 3.00076 3.31236 3.34992 3.37987 3.69635 4.41618 4.47665 4.61226 5.01541 5.15974 5.27526 5.27933 5.56250 5.61672 5.74304 5.84192 5.92664 6.16421 6.34930 6.35859 6.42137 6.73989 6.78961 6.93626 7.51388 7.61483 7.88581 8.03177 8.27805 8.66665 8.93402 9.52411 11.02124 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.077806 B = 0.005342 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.784413 B = 5240.132311 C = 5470.841138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.060 3.940 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.523 4.523 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.121 3.879 11 N -0.721 5.721 12 C 0.514 3.486 13 O -0.551 6.551 14 C -0.118 4.118 15 C -0.090 4.090 16 C -0.170 4.170 17 C -0.163 4.163 18 C -0.088 4.088 19 H 0.263 0.737 20 H 0.022 0.978 21 H 0.022 0.978 22 H 0.055 0.945 23 H 0.056 0.944 24 H 0.398 0.602 25 H 0.102 0.898 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.125 0.875 29 H 0.124 0.876 30 H 0.072 0.928 31 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.939 -15.502 1.220 15.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.142 4.142 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.561 4.561 8 H 0.077 0.923 9 C -0.025 4.025 10 C -0.002 4.002 11 N -0.370 5.370 12 C 0.299 3.701 13 O -0.429 6.429 14 C -0.139 4.139 15 C -0.127 4.127 16 C -0.188 4.188 17 C -0.181 4.181 18 C -0.125 4.125 19 H 0.072 0.928 20 H 0.041 0.959 21 H 0.041 0.959 22 H 0.074 0.926 23 H 0.074 0.926 24 H 0.231 0.769 25 H 0.120 0.880 26 H 0.099 0.901 27 H 0.097 0.903 28 H 0.143 0.857 29 H 0.142 0.858 30 H 0.090 0.910 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.215 -15.332 1.213 15.381 hybrid contribution -0.147 0.925 0.009 0.937 sum -0.362 -14.407 1.222 14.463 Atomic orbital electron populations 1.69942 1.06099 1.26990 1.50304 1.24992 0.94887 0.99392 0.94953 0.86569 0.79522 0.82642 0.78789 1.20103 1.21225 1.20109 1.21020 0.93210 0.90424 1.51487 0.92319 1.19318 0.94197 0.91125 0.97833 1.21728 0.96068 0.81634 1.00743 1.46330 1.10532 1.06527 1.73590 1.20312 0.88053 0.85350 0.76373 1.90652 1.14074 1.87669 1.50526 1.22184 0.98466 0.93396 0.99864 1.21318 1.00736 0.94778 0.95903 1.23223 0.99483 0.95733 1.00341 1.23318 0.97362 0.99036 0.98416 1.21278 0.99510 0.91946 0.99800 0.92784 0.95948 0.95939 0.92617 0.92596 0.76861 0.87953 0.90116 0.90318 0.85726 0.85781 0.90950 0.88708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 3 Si 0.90 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.52 -14.57 9.11 -34.44 -0.31 -14.88 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.01 0.32 5.09 -27.89 -0.14 0.17 16 10 C 0.12 2.59 5.61 -4.04 -0.02 2.57 16 11 N -0.72 -12.65 5.56 -60.29 -0.33 -12.99 16 12 C 0.51 8.79 7.06 -10.98 -0.08 8.72 16 13 O -0.55 -11.49 15.51 5.56 0.09 -11.41 16 14 C -0.12 -1.50 3.55 -90.06 -0.32 -1.82 16 15 C -0.09 -1.01 6.37 -26.82 -0.17 -1.18 16 16 C -0.17 -1.72 10.78 -35.70 -0.38 -2.10 16 17 C -0.16 -1.68 10.77 -35.70 -0.38 -2.06 16 18 C -0.09 -1.07 6.18 -26.84 -0.17 -1.24 16 19 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 20 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 21 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 23 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 24 H 0.40 6.03 8.47 -40.82 -0.35 5.68 16 25 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 26 H 0.08 1.01 7.88 -51.93 -0.41 0.60 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 29 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.09 1.36 6.95 -51.93 -0.36 1.00 16 LS Contribution 267.65 15.07 4.03 4.03 Total: -1.00 -31.14 267.65 -7.04 -38.18 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -4.46 Total: 1.46 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -2.08 Total: -10.25 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.40 Total: -38.41 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.41 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -31.14 -7.04 -38.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308190258.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.638 kcal (2) G-P(sol) polarization free energy of solvation -31.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds