Wall clock time and date at job start Sun Mar 29 2020 21:34:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00240 * 2 1 4 4 H 1.48497 * 109.47025 * 240.00182 * 3 2 1 5 5 H 1.48501 * 109.47057 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47148 * 120.00386 * 3 2 1 7 7 C 1.37885 * 119.99834 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99708 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99883 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.46969 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.47237 * 179.97438 * 10 9 7 12 12 C 1.34773 * 119.99969 * 179.72043 * 11 10 9 13 13 O 1.21281 * 120.00220 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00080 * 180.02562 * 12 11 10 15 15 C 1.54639 * 111.03534 * 292.02766 * 14 12 11 16 16 C 1.51104 * 104.72225 * 217.33126 * 15 14 12 17 17 C 1.30525 * 111.10361 * 16.43876 * 16 15 14 18 18 C 1.51098 * 111.10534 * 359.97438 * 17 16 15 19 19 H 0.96999 * 119.99905 * 359.97438 * 1 2 3 20 20 H 1.09000 * 109.47664 * 59.99992 * 9 7 2 21 21 H 1.09002 * 109.46824 * 299.99463 * 9 7 2 22 22 H 1.09001 * 109.47671 * 59.99812 * 10 9 7 23 23 H 1.08998 * 109.47454 * 299.99809 * 10 9 7 24 24 H 0.97005 * 119.99811 * 0.02562 * 11 10 9 25 25 H 1.08998 * 110.90874 * 56.03118 * 14 12 11 26 26 H 1.08996 * 110.38554 * 336.14404 * 15 14 12 27 27 H 1.09002 * 110.38790 * 98.51941 * 15 14 12 28 28 H 1.07999 * 124.44457 * 196.45615 * 16 15 14 29 29 H 1.08000 * 124.44479 * 180.02562 * 17 16 15 30 30 H 1.09001 * 110.38814 * 224.75144 * 18 17 16 31 31 H 1.09001 * 110.48306 * 102.42385 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 7 1.5126 -4.9309 -0.0020 12 6 2.1864 -6.0980 -0.0076 13 8 3.3993 -6.0981 -0.0117 14 6 1.4329 -7.4032 -0.0087 15 6 0.6912 -7.6170 1.3312 16 6 0.8114 -9.0982 1.6046 17 6 1.7463 -9.6373 0.8703 18 6 2.4049 -8.6056 -0.0157 19 1 -0.4850 0.8400 0.0004 20 1 0.6246 -2.5564 -0.8919 21 1 0.6240 -2.5575 0.8881 22 1 2.8712 -3.6048 0.8890 23 1 2.8725 -3.6040 -0.8909 24 1 0.5425 -4.9308 -0.0028 25 1 0.7429 -7.4532 -0.8509 26 1 1.1695 -7.0442 2.1256 27 1 -0.3567 -7.3325 1.2348 28 1 0.2035 -9.6398 2.3142 29 1 2.0133 -10.6835 0.8925 30 1 2.5224 -8.9935 -1.0275 31 1 3.3722 -8.3136 0.3930 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308190258.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:46 Heat of formation + Delta-G solvation = -59.992502 kcal Electronic energy + Delta-G solvation = -13164.980637 eV Core-core repulsion = 10830.970536 eV Total energy + Delta-G solvation = -2334.010101 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18033 -38.59387 -36.58213 -34.83186 -31.95668 -30.19308 -29.06470 -26.74488 -23.68955 -22.60180 -20.83243 -19.64846 -18.61910 -18.18059 -17.18921 -16.58997 -16.50985 -16.13208 -15.36683 -14.69437 -14.32407 -13.81140 -13.47433 -13.22252 -13.01603 -12.94608 -12.67868 -12.55285 -12.26261 -12.16536 -12.04177 -11.64602 -11.48132 -10.79688 -10.60711 -10.03999 -9.78149 -8.24669 -6.35392 1.38617 1.41650 1.43835 1.51926 1.62319 2.25101 2.45428 3.10056 3.50374 3.66830 3.94253 4.25374 4.38103 4.46825 4.50506 4.60041 4.79460 4.82988 4.83582 4.95451 5.07279 5.20073 5.29600 5.48663 5.56861 5.62250 5.77726 6.02536 6.15408 6.61993 6.77441 7.26476 7.33999 8.86973 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.077806 B = 0.005342 C = 0.005117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 359.784413 B = 5240.132311 C = 5470.841138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.965 3.035 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.269 1.269 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.023 3.977 10 C 0.139 3.861 11 N -0.715 5.715 12 C 0.513 3.487 13 O -0.591 6.591 14 C -0.112 4.112 15 C -0.092 4.092 16 C -0.167 4.167 17 C -0.166 4.166 18 C -0.092 4.092 19 H 0.266 0.734 20 H 0.009 0.991 21 H 0.009 0.991 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.411 0.589 25 H 0.128 0.872 26 H 0.064 0.936 27 H 0.099 0.901 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.082 0.918 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.428 -16.302 1.340 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.190 4.190 3 Si 0.789 3.211 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.194 1.194 7 C -0.588 4.588 8 H 0.076 0.924 9 C -0.014 4.014 10 C 0.015 3.985 11 N -0.365 5.365 12 C 0.301 3.699 13 O -0.472 6.472 14 C -0.133 4.133 15 C -0.129 4.129 16 C -0.184 4.184 17 C -0.184 4.184 18 C -0.130 4.130 19 H 0.075 0.925 20 H 0.028 0.972 21 H 0.028 0.972 22 H 0.062 0.938 23 H 0.063 0.937 24 H 0.247 0.753 25 H 0.146 0.854 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.167 0.833 29 H 0.165 0.835 30 H 0.101 0.899 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.726 -16.154 1.334 16.225 hybrid contribution 0.000 1.151 -0.031 1.151 sum -0.726 -15.003 1.303 15.077 Atomic orbital electron populations 1.70044 1.07531 1.28106 1.50849 1.25857 0.95787 1.03046 0.94314 0.85505 0.78327 0.78153 0.79109 1.19368 1.20471 1.19384 1.21443 0.93550 0.92012 1.51820 0.92424 1.19127 0.94194 0.91697 0.96408 1.21227 0.95102 0.82496 0.99648 1.46159 1.11126 1.05531 1.73722 1.21110 0.87765 0.86357 0.74712 1.90635 1.16131 1.88310 1.52172 1.22231 0.98670 0.90542 1.01888 1.21366 1.01461 0.95819 0.94253 1.23399 0.99687 0.94806 1.00553 1.23419 0.97209 0.99687 0.98065 1.21295 0.98312 0.92433 1.00913 0.92489 0.97239 0.97233 0.93763 0.93683 0.75271 0.85441 0.91763 0.88264 0.83280 0.83516 0.89896 0.91428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 2 C 0.01 0.50 5.46 84.66 0.46 0.96 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 4 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.93 9.11 25.60 0.23 -30.70 16 8 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 9 C 0.02 1.18 5.09 29.85 0.15 1.33 16 10 C 0.14 6.09 5.61 86.38 0.48 6.57 16 11 N -0.72 -25.03 5.56 -463.05 -2.57 -27.60 16 12 C 0.51 17.43 7.06 87.66 0.62 18.05 16 13 O -0.59 -25.11 15.51 -3.03 -0.05 -25.16 16 14 C -0.11 -2.68 3.55 -10.43 -0.04 -2.72 16 15 C -0.09 -1.87 6.37 30.53 0.19 -1.67 16 16 C -0.17 -2.87 10.78 26.26 0.28 -2.59 16 17 C -0.17 -2.99 10.77 26.26 0.28 -2.71 16 18 C -0.09 -2.13 6.18 30.52 0.19 -1.94 16 19 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 20 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 21 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 22 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 23 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.41 12.17 8.47 -92.70 -0.79 11.39 16 25 H 0.13 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.06 1.54 7.88 -2.39 -0.02 1.52 16 27 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 29 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.07 1.95 6.95 -2.39 -0.02 1.93 16 Total: -1.00 -66.71 267.65 2.88 -63.83 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.32 Total: 12.65 kcal Atomic # 6 Polarization: -18.28 SS G_CDS: 2.86 Total: -15.41 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -2.29 Total: -81.58 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.05 Total: -25.16 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -66.71 2.88 -63.83 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308190258.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.839 kcal (2) G-P(sol) polarization free energy of solvation -66.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds