Wall clock time and date at job start Sun Mar 29 2020 21:33:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48498 * 109.47109 * 270.00337 * 3 2 1 5 5 H 1.48507 * 109.46754 * 30.00076 * 3 2 1 6 6 H 1.48498 * 109.47278 * 149.99907 * 3 2 1 7 7 C 1.37884 * 119.99985 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99697 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 180.27663 * 7 2 1 10 10 N 1.46491 * 109.46957 * 179.72213 * 9 7 2 11 11 C 1.34780 * 120.00091 * 179.97438 * 10 9 7 12 12 O 1.21286 * 119.99880 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00000 * 179.97438 * 11 10 9 14 14 H 1.08998 * 115.55364 * 325.72426 * 13 11 10 15 15 C 1.53001 * 117.49337 * 111.39413 * 13 11 10 16 16 C 1.53001 * 60.00132 * 107.48599 * 15 13 11 17 17 H 1.09001 * 117.50227 * 252.50763 * 16 15 13 18 18 C 1.53007 * 117.49952 * 107.48564 * 16 15 13 19 19 C 1.52997 * 117.49731 * 180.02562 * 18 16 15 20 20 C 1.53000 * 117.49870 * 111.37702 * 18 16 15 21 21 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 22 22 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 23 23 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 24 24 H 0.97003 * 120.00560 * 359.97438 * 10 9 7 25 25 H 1.08999 * 117.49730 * 214.97456 * 15 13 11 26 26 H 1.08993 * 117.50514 * 359.97438 * 15 13 11 27 27 H 1.09001 * 115.54703 * 325.71176 * 18 16 15 28 28 H 1.08996 * 117.50231 * 359.97438 * 19 18 16 29 29 H 1.09007 * 117.49534 * 145.02398 * 19 18 16 30 30 H 1.08993 * 117.49642 * 214.97601 * 20 18 16 31 31 H 1.08993 * 117.49564 * 0.02562 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5116 -1.1941 0.0058 10 7 3.9998 -2.5753 0.0106 11 6 5.3249 -2.8216 0.0161 12 8 6.1131 -1.8997 0.0175 13 6 5.8272 -4.2424 0.0216 14 1 5.2157 -4.9551 0.5750 15 6 6.5340 -4.7466 -1.2382 16 6 7.3422 -4.4560 0.0280 17 1 7.9756 -3.5690 0.0283 18 6 7.8834 -5.6539 0.8111 19 6 8.6911 -5.3633 2.0776 20 6 9.3984 -5.8676 0.8175 21 1 -0.4849 0.8400 0.0004 22 1 3.8786 -0.6821 -0.8838 23 1 3.8711 -0.6785 0.8962 24 1 3.3695 -3.3126 0.0098 25 1 6.3879 -5.7911 -1.5134 26 1 6.6354 -4.0509 -2.0711 27 1 7.2500 -6.5410 0.8104 28 1 8.8373 -4.3188 2.3527 29 1 8.5893 -6.0595 2.9102 30 1 9.7616 -6.8952 0.8215 31 1 10.0095 -5.1546 0.2642 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308192761.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:39 Heat of formation + Delta-G solvation = -20.725770 kcal Electronic energy + Delta-G solvation = -13089.343197 eV Core-core repulsion = 10757.035830 eV Total energy + Delta-G solvation = -2332.307368 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.97212 -38.80577 -36.31188 -35.79852 -34.41588 -30.21628 -26.03299 -24.49977 -23.48830 -23.05499 -21.35786 -20.94306 -19.17524 -17.91826 -17.21819 -16.46770 -16.30993 -15.99984 -15.42620 -14.85984 -14.47459 -14.26713 -13.85769 -13.40745 -13.12815 -12.73972 -12.43873 -12.26262 -12.12639 -11.95679 -11.77683 -11.69022 -10.98059 -10.94186 -10.89174 -10.37883 -9.97273 -8.42287 -6.49603 1.30697 1.32881 1.45553 1.54320 2.25836 2.33394 2.67215 2.92859 3.26432 3.57028 3.75694 3.90354 4.09407 4.26413 4.33114 4.36444 4.41105 4.72822 4.83363 4.83927 4.97880 5.01303 5.06974 5.20212 5.23257 5.31200 5.39523 5.49414 6.06343 6.51055 6.81334 7.12931 7.37200 8.72518 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.065103 B = 0.005773 C = 0.005605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 429.982229 B = 4849.121677 C = 4994.545284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.028 3.972 3 Si 0.937 3.063 4 H -0.264 1.264 5 H -0.271 1.271 6 H -0.263 1.263 7 C -0.548 4.548 8 H 0.060 0.940 9 C 0.231 3.769 10 N -0.701 5.701 11 C 0.525 3.475 12 O -0.602 6.602 13 C -0.190 4.190 14 H 0.148 0.852 15 C -0.128 4.128 16 C -0.091 4.091 17 H 0.090 0.910 18 C -0.128 4.128 19 C -0.187 4.187 20 C -0.165 4.165 21 H 0.273 0.727 22 H 0.011 0.989 23 H 0.011 0.989 24 H 0.410 0.590 25 H 0.138 0.862 26 H 0.088 0.912 27 H 0.125 0.875 28 H 0.079 0.921 29 H 0.109 0.891 30 H 0.115 0.885 31 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.989 -12.919 0.513 19.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.189 1.189 5 H -0.196 1.196 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.078 0.922 9 C 0.107 3.893 10 N -0.350 5.350 11 C 0.313 3.687 12 O -0.485 6.485 13 C -0.211 4.211 14 H 0.166 0.834 15 C -0.165 4.165 16 C -0.110 4.110 17 H 0.108 0.892 18 C -0.146 4.146 19 C -0.224 4.224 20 C -0.201 4.201 21 H 0.082 0.918 22 H 0.028 0.972 23 H 0.029 0.971 24 H 0.245 0.755 25 H 0.156 0.844 26 H 0.106 0.894 27 H 0.143 0.857 28 H 0.098 0.902 29 H 0.128 0.872 30 H 0.133 0.867 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 15.334 -12.137 0.516 19.563 hybrid contribution -0.532 0.921 0.071 1.066 sum 14.803 -11.216 0.587 18.581 Atomic orbital electron populations 1.69976 1.07645 1.28681 1.50543 1.25591 0.95548 1.02631 0.93486 0.85859 0.79157 0.79363 0.79516 1.18865 1.19552 1.18781 1.21283 0.89812 0.94692 1.52839 0.92183 1.19111 0.93526 0.81103 0.95548 1.45989 1.06690 1.09696 1.72588 1.20490 0.81979 0.91194 0.75007 1.90607 1.56575 1.48085 1.53251 1.22286 0.97925 0.93364 1.07542 0.83402 1.23112 0.99760 1.03562 0.90070 1.21751 0.90516 0.98783 0.99925 0.89226 1.21760 0.94891 0.97768 1.00152 1.23024 1.04856 1.02109 0.92385 1.23023 0.93397 1.03215 1.00515 0.91754 0.97151 0.97130 0.75450 0.84413 0.89380 0.85689 0.90225 0.87242 0.86667 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.93 13.96 21.45 0.30 -55.63 16 2 C 0.03 1.60 5.47 84.66 0.46 2.06 16 3 Si 0.94 44.69 27.47 68.60 1.88 46.57 16 4 H -0.26 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 6 H -0.26 -12.57 6.54 99.48 0.65 -11.92 16 7 C -0.55 -30.86 9.83 25.60 0.25 -30.61 16 8 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 9 C 0.23 11.71 4.50 85.64 0.38 12.09 16 10 N -0.70 -29.28 5.55 -466.80 -2.59 -31.87 16 11 C 0.53 20.63 7.61 87.66 0.67 21.30 16 12 O -0.60 -28.63 16.26 -3.05 -0.05 -28.68 16 13 C -0.19 -5.16 5.91 -11.54 -0.07 -5.22 16 14 H 0.15 3.20 8.14 -2.39 -0.02 3.18 16 15 C -0.13 -2.79 9.95 30.59 0.30 -2.49 16 16 C -0.09 -2.21 5.36 -10.79 -0.06 -2.27 16 17 H 0.09 2.68 7.67 -2.39 -0.02 2.66 16 18 C -0.13 -2.32 5.85 -10.79 -0.06 -2.38 16 19 C -0.19 -3.36 10.25 30.61 0.31 -3.05 16 20 C -0.16 -2.56 10.25 30.61 0.31 -2.24 16 21 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 22 H 0.01 0.55 7.58 -2.38 -0.02 0.54 16 23 H 0.01 0.58 7.19 -2.39 -0.02 0.56 16 24 H 0.41 14.93 8.32 -92.71 -0.77 14.16 16 25 H 0.14 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.11 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -68.59 271.01 2.35 -66.25 By element: Atomic # 1 Polarization: 15.87 SS G_CDS: 0.29 Total: 16.16 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 2.51 Total: -12.81 kcal Atomic # 7 Polarization: -85.20 SS G_CDS: -2.29 Total: -87.49 kcal Atomic # 8 Polarization: -28.63 SS G_CDS: -0.05 Total: -28.68 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.57 kcal Total: -68.59 2.35 -66.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308192761.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.521 kcal (2) G-P(sol) polarization free energy of solvation -68.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds