Wall clock time and date at job start Sun Mar 29 2020 21:33:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47115 * 180.02562 * 9 7 2 11 11 C 1.34782 * 120.00016 * 179.97438 * 10 9 7 12 12 O 1.21280 * 120.00033 * 0.02562 * 11 10 9 13 13 C 1.50699 * 119.99692 * 180.02562 * 11 10 9 14 14 H 1.08996 * 115.55323 * 34.28089 * 13 11 10 15 15 C 1.53003 * 117.49742 * 248.60845 * 13 11 10 16 16 C 1.53000 * 60.00017 * 252.51000 * 15 13 11 17 17 H 1.08999 * 117.49824 * 107.48803 * 16 15 13 18 18 C 1.52992 * 117.50082 * 252.50950 * 16 15 13 19 19 C 1.53002 * 117.49947 * 197.24369 * 18 16 15 20 20 C 1.53000 * 60.00168 * 252.50669 * 19 18 16 21 21 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 22 22 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 23 23 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 24 24 H 0.97001 * 120.00220 * 0.02562 * 10 9 7 25 25 H 1.08995 * 117.49738 * 359.97438 * 15 13 11 26 26 H 1.09001 * 117.50036 * 144.99598 * 15 13 11 27 27 H 1.09004 * 115.55192 * 342.95151 * 18 16 15 28 28 H 1.08998 * 117.49979 * 0.02562 * 19 18 16 29 29 H 1.09003 * 117.50091 * 145.02073 * 19 18 16 30 30 H 1.08996 * 117.50022 * 252.51197 * 20 19 18 31 31 H 1.08996 * 117.49631 * 107.48676 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5613 -5.1050 0.0000 13 6 2.7330 -6.0288 0.0006 14 1 3.6561 -5.8579 0.5544 15 6 2.8159 -6.8880 -1.2627 16 6 2.1606 -7.4477 0.0014 17 1 1.0757 -7.5527 0.0016 18 6 2.9275 -8.5184 0.7800 19 6 2.1396 -9.3619 1.7843 20 6 3.1202 -8.2980 2.2817 21 1 -0.4850 0.8401 0.0004 22 1 0.6247 -2.5571 0.8897 23 1 0.6240 -2.5568 -0.8903 24 1 3.1567 -3.4355 -0.0002 25 1 2.1619 -6.6250 -2.0940 26 1 3.7936 -7.2822 -1.5400 27 1 3.7351 -9.0077 0.2354 28 1 1.0749 -9.1543 1.8901 29 1 2.4287 -10.4064 1.9006 30 1 4.0544 -8.6425 2.7251 31 1 2.7006 -7.3901 2.7150 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308192763.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:40 Heat of formation + Delta-G solvation = -2.862102 kcal Electronic energy + Delta-G solvation = -13114.046660 eV Core-core repulsion = 10782.513919 eV Total energy + Delta-G solvation = -2331.532741 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.45699 -37.58626 -34.82422 -34.05926 -32.27567 -27.58521 -24.65883 -23.33526 -22.44998 -21.89755 -19.99036 -19.31691 -17.24167 -15.96953 -15.68329 -15.08928 -14.67031 -14.37701 -14.10448 -13.20097 -12.94556 -12.16567 -11.86708 -11.81908 -11.62478 -11.37612 -11.05300 -10.89796 -10.84248 -10.74428 -10.30390 -9.97759 -9.60839 -9.39932 -8.99761 -8.72081 -7.85932 -6.15648 -4.22667 3.12356 3.26074 3.30657 3.32300 3.64770 4.08656 4.11974 4.36652 4.70298 4.82660 4.93639 5.13229 5.18358 5.20559 5.35614 5.47465 5.59784 5.62903 5.80761 5.87862 6.07826 6.11314 6.18314 6.38682 7.32133 7.46377 7.52688 7.68332 7.98217 8.65940 8.79517 9.13645 9.44080 10.94614 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.062987 B = 0.005546 C = 0.005495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.432810 B = 5047.640733 C = 5094.049020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.905 3.095 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.249 3.751 10 N -0.708 5.708 11 C 0.525 3.475 12 O -0.559 6.559 13 C -0.179 4.179 14 H 0.119 0.881 15 C -0.148 4.148 16 C -0.096 4.096 17 H 0.118 0.882 18 C -0.124 4.124 19 C -0.176 4.176 20 C -0.178 4.178 21 H 0.266 0.734 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.391 0.609 25 H 0.099 0.901 26 H 0.100 0.900 27 H 0.106 0.894 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.172 -14.019 0.989 16.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.128 3.872 10 N -0.355 5.355 11 C 0.310 3.690 12 O -0.439 6.439 13 C -0.201 4.201 14 H 0.137 0.863 15 C -0.185 4.185 16 C -0.114 4.114 17 H 0.136 0.864 18 C -0.142 4.142 19 C -0.213 4.213 20 C -0.215 4.215 21 H 0.076 0.924 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.224 0.776 25 H 0.117 0.883 26 H 0.118 0.882 27 H 0.124 0.876 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.131 -13.993 0.992 15.736 hybrid contribution 0.945 1.124 0.045 1.469 sum 8.075 -12.868 1.036 15.228 Atomic orbital electron populations 1.69970 1.06127 1.27408 1.48850 1.24957 0.94915 0.99450 0.94680 0.86463 0.79407 0.82276 0.78695 1.21054 1.20059 1.20056 1.21197 0.93246 0.90463 1.53301 0.91926 1.19110 0.88345 0.81991 0.97705 1.46396 1.11145 1.05956 1.72014 1.19573 0.88445 0.83787 0.77195 1.90641 1.16784 1.84933 1.51510 1.22387 1.01487 0.91791 1.04413 0.86343 1.22992 1.02425 1.01716 0.91369 1.21773 0.99659 0.90982 0.99014 0.86425 1.21760 1.01520 0.99846 0.91119 1.22978 0.98248 0.96284 1.03807 1.22983 1.00981 1.01210 0.96312 0.92391 0.95563 0.95568 0.77621 0.88265 0.88182 0.87634 0.88567 0.88959 0.88956 0.88444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 6 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.76 5.43 -5.20 -0.03 6.73 16 10 N -0.71 -15.44 5.55 -61.47 -0.34 -15.78 16 11 C 0.53 10.93 7.61 -10.98 -0.08 10.84 16 12 O -0.56 -13.91 16.26 5.56 0.09 -13.82 16 13 C -0.18 -2.72 5.83 -91.77 -0.54 -3.25 16 14 H 0.12 1.55 8.14 -51.93 -0.42 1.13 16 15 C -0.15 -1.89 9.95 -26.73 -0.27 -2.16 16 16 C -0.10 -1.31 5.38 -90.62 -0.49 -1.79 16 17 H 0.12 1.85 7.67 -51.93 -0.40 1.45 16 18 C -0.12 -1.36 5.87 -90.62 -0.53 -1.89 16 19 C -0.18 -1.80 10.25 -26.73 -0.27 -2.07 16 20 C -0.18 -1.89 10.18 -26.73 -0.27 -2.16 16 21 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.03 0.79 8.14 -51.92 -0.42 0.36 16 23 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 24 H 0.39 7.34 8.32 -40.82 -0.34 7.00 16 25 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 26 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 27 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.10 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 274.51 15.07 4.14 4.14 Total: -1.00 -31.72 274.51 -7.79 -39.51 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.50 Total: 4.99 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -2.90 Total: -9.36 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.40 Total: -41.43 kcal Atomic # 8 Polarization: -13.91 SS G_CDS: 0.09 Total: -13.82 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -31.72 -7.79 -39.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308192763.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.652 kcal (2) G-P(sol) polarization free energy of solvation -31.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds