Wall clock time and date at job start Sun Mar 29 2020 21:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47517 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00325 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99748 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99973 * 179.97438 * 11 10 9 14 14 H 1.08996 * 115.54849 * 325.72540 * 13 11 10 15 15 C 1.53003 * 117.49524 * 111.39101 * 13 11 10 16 16 C 1.52997 * 117.49735 * 180.02562 * 13 11 10 17 17 H 1.08996 * 117.49690 * 145.02546 * 16 13 11 18 18 C 1.52998 * 117.50049 * 0.02562 * 16 13 11 19 19 C 1.52999 * 117.49761 * 128.61726 * 18 16 13 20 20 C 1.52999 * 60.00049 * 252.51183 * 19 18 16 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 23 23 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 24 24 H 0.97006 * 119.99504 * 359.97438 * 10 9 7 25 25 H 1.08998 * 117.49858 * 214.98030 * 15 13 11 26 26 H 1.08998 * 117.49839 * 359.97438 * 15 13 11 27 27 H 1.08998 * 115.54961 * 274.32999 * 18 16 13 28 28 H 1.08996 * 117.50071 * 0.02562 * 19 18 16 29 29 H 1.09008 * 117.49645 * 145.02176 * 19 18 16 30 30 H 1.08999 * 117.49748 * 252.50822 * 20 19 18 31 31 H 1.09003 * 117.51279 * 107.48187 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7535 -4.8834 -0.0011 12 8 0.5611 -5.1049 -0.0011 13 6 2.7327 -6.0289 -0.0016 14 1 3.6558 -5.8579 -0.5554 15 6 2.8156 -6.8881 1.2617 16 6 2.1602 -7.4477 -0.0028 17 1 2.7067 -8.2105 -0.5574 18 6 0.6373 -7.5950 -0.0039 19 6 0.0164 -8.5055 -1.0652 20 6 -0.1304 -6.9869 -1.1794 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5570 0.8898 23 1 0.6239 -2.5567 -0.8903 24 1 3.1565 -3.4355 -0.0009 25 1 3.7931 -7.2827 1.5387 26 1 2.1621 -6.6245 2.0933 27 1 0.1616 -7.5669 0.9764 28 1 0.6929 -8.9999 -1.7624 29 1 -0.8680 -9.0769 -0.7832 30 1 -1.1113 -6.5591 -0.9725 31 1 0.4495 -6.4816 -1.9518 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308192764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:42 Heat of formation + Delta-G solvation = 8.525865 kcal Electronic energy + Delta-G solvation = -13500.904915 eV Core-core repulsion = 11169.865994 eV Total energy + Delta-G solvation = -2331.038921 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.59147 -36.98793 -34.70894 -34.03114 -32.23291 -27.53361 -24.43918 -23.30281 -22.10196 -21.76188 -20.21023 -18.99785 -16.93084 -15.92104 -15.42483 -15.00882 -14.44838 -14.39629 -13.95686 -13.27957 -12.67878 -12.14247 -11.87803 -11.81876 -11.26153 -11.05278 -10.92879 -10.87271 -10.66520 -10.63275 -10.23472 -9.66176 -9.48130 -9.38508 -8.70224 -8.44761 -7.77816 -6.15229 -4.21911 3.21557 3.26078 3.30763 3.32346 3.93459 4.13651 4.32532 4.40497 4.92292 5.05560 5.16031 5.20837 5.35195 5.49461 5.59327 5.63464 5.75507 5.87594 5.93713 6.14135 6.29430 6.43536 6.58730 6.68892 7.34397 7.51956 7.55042 7.70809 7.99832 8.70318 8.82619 9.20731 9.45388 10.94977 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058999 B = 0.006602 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.467949 B = 4239.865464 C = 4572.331252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.285 1.285 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.252 3.748 10 N -0.712 5.712 11 C 0.522 3.478 12 O -0.538 6.538 13 C -0.185 4.185 14 H 0.115 0.885 15 C -0.151 4.151 16 C -0.092 4.092 17 H 0.107 0.893 18 C -0.107 4.107 19 C -0.207 4.207 20 C -0.112 4.112 21 H 0.266 0.734 22 H 0.025 0.975 23 H 0.026 0.974 24 H 0.389 0.611 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.091 0.909 31 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.448 -12.770 -0.182 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.211 1.211 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.131 3.869 10 N -0.360 5.360 11 C 0.307 3.693 12 O -0.417 6.417 13 C -0.206 4.206 14 H 0.133 0.867 15 C -0.188 4.188 16 C -0.111 4.111 17 H 0.125 0.875 18 C -0.125 4.125 19 C -0.244 4.244 20 C -0.149 4.149 21 H 0.076 0.924 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.221 0.779 25 H 0.117 0.883 26 H 0.117 0.883 27 H 0.117 0.883 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.398 -12.748 -0.184 13.487 hybrid contribution 1.041 1.154 0.001 1.554 sum 5.439 -11.595 -0.183 12.808 Atomic orbital electron populations 1.69969 1.06107 1.27362 1.48951 1.24951 0.94911 0.99425 0.94726 0.86476 0.79419 0.82345 0.78682 1.21066 1.20078 1.20082 1.21211 0.93231 0.90568 1.53163 0.92018 1.19054 0.88302 0.81968 0.97563 1.46445 1.10977 1.06064 1.72503 1.19513 0.88660 0.83505 0.77656 1.90682 1.16374 1.84234 1.50362 1.22381 1.01360 0.92505 1.04401 0.86660 1.22966 1.02327 1.02023 0.91512 1.21735 0.94364 0.94130 1.00857 0.87510 1.21393 0.91449 1.04355 0.95276 1.23258 1.02816 0.95176 1.03199 1.22502 1.01519 0.91523 0.99323 0.92428 0.95699 0.95645 0.77900 0.88268 0.88330 0.88291 0.89749 0.89666 0.89095 0.89809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.29 55.43 0.74 -25.57 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 4 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.91 9.28 -34.44 -0.32 -15.23 16 8 H 0.06 1.58 7.60 -52.49 -0.40 1.19 16 9 C 0.25 6.73 5.43 -5.20 -0.03 6.70 16 10 N -0.71 -15.24 5.55 -61.48 -0.34 -15.59 16 11 C 0.52 10.41 7.45 -10.99 -0.08 10.33 16 12 O -0.54 -12.23 11.54 5.56 0.06 -12.16 16 13 C -0.19 -2.75 6.18 -91.77 -0.57 -3.31 16 14 H 0.12 1.45 8.14 -51.93 -0.42 1.03 16 15 C -0.15 -1.92 9.96 -26.71 -0.27 -2.19 16 16 C -0.09 -1.24 5.87 -90.61 -0.53 -1.77 16 17 H 0.11 1.21 8.14 -51.93 -0.42 0.78 16 18 C -0.11 -1.61 4.48 -90.62 -0.41 -2.01 16 19 C -0.21 -2.73 10.25 -26.73 -0.27 -3.00 16 20 C -0.11 -1.83 7.08 -26.73 -0.19 -2.02 16 21 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 23 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 24 H 0.39 7.27 8.32 -40.82 -0.34 6.93 16 25 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.10 1.37 8.14 -51.93 -0.42 0.95 16 27 H 0.10 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.08 1.02 8.14 -51.92 -0.42 0.60 16 30 H 0.09 1.61 8.06 -51.93 -0.42 1.19 16 31 H 0.08 1.47 7.96 -51.93 -0.41 1.05 16 LS Contribution 266.17 15.07 4.01 4.01 Total: -1.00 -30.52 266.17 -7.82 -38.34 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -4.51 Total: 5.83 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -2.76 Total: -10.83 kcal Atomic # 7 Polarization: -41.55 SS G_CDS: 0.40 Total: -41.15 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.06 Total: -12.16 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -30.52 -7.82 -38.34 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308192764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.862 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds