Wall clock time and date at job start Sun Mar 29 2020 21:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.47517 * 180.02562 * 9 7 2 11 11 C 1.34776 * 120.00325 * 180.02562 * 10 9 7 12 12 O 1.21275 * 119.99748 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99973 * 179.97438 * 11 10 9 14 14 H 1.08996 * 115.54849 * 325.72540 * 13 11 10 15 15 C 1.53003 * 117.49524 * 111.39101 * 13 11 10 16 16 C 1.52997 * 117.49735 * 180.02562 * 13 11 10 17 17 H 1.08996 * 117.49690 * 145.02546 * 16 13 11 18 18 C 1.52998 * 117.50049 * 0.02562 * 16 13 11 19 19 C 1.52999 * 117.49761 * 128.61726 * 18 16 13 20 20 C 1.52999 * 60.00049 * 252.51183 * 19 18 16 21 21 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 22 22 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 23 23 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 24 24 H 0.97006 * 119.99504 * 359.97438 * 10 9 7 25 25 H 1.08998 * 117.49858 * 214.98030 * 15 13 11 26 26 H 1.08998 * 117.49839 * 359.97438 * 15 13 11 27 27 H 1.08998 * 115.54961 * 274.32999 * 18 16 13 28 28 H 1.08996 * 117.50071 * 0.02562 * 19 18 16 29 29 H 1.09008 * 117.49645 * 145.02176 * 19 18 16 30 30 H 1.08999 * 117.49748 * 252.50822 * 20 19 18 31 31 H 1.09003 * 117.51279 * 107.48187 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6128 -0.0005 11 6 1.7535 -4.8834 -0.0011 12 8 0.5611 -5.1049 -0.0011 13 6 2.7327 -6.0289 -0.0016 14 1 3.6558 -5.8579 -0.5554 15 6 2.8156 -6.8881 1.2617 16 6 2.1602 -7.4477 -0.0028 17 1 2.7067 -8.2105 -0.5574 18 6 0.6373 -7.5950 -0.0039 19 6 0.0164 -8.5055 -1.0652 20 6 -0.1304 -6.9869 -1.1794 21 1 -0.4850 0.8401 0.0004 22 1 0.6246 -2.5570 0.8898 23 1 0.6239 -2.5567 -0.8903 24 1 3.1565 -3.4355 -0.0009 25 1 3.7931 -7.2827 1.5387 26 1 2.1621 -6.6245 2.0933 27 1 0.1616 -7.5669 0.9764 28 1 0.6929 -8.9999 -1.7624 29 1 -0.8680 -9.0769 -0.7832 30 1 -1.1113 -6.5591 -0.9725 31 1 0.4495 -6.4816 -1.9518 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308192764.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:42 Heat of formation + Delta-G solvation = -11.519199 kcal Electronic energy + Delta-G solvation = -13501.774134 eV Core-core repulsion = 11169.865994 eV Total energy + Delta-G solvation = -2331.908141 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.02921 -38.41144 -36.00388 -35.87628 -34.25827 -29.56481 -26.06020 -24.56698 -23.66756 -23.10470 -21.55256 -20.55014 -18.67338 -17.58267 -17.05697 -16.48404 -16.05924 -15.94702 -15.51128 -14.82283 -14.23821 -13.93683 -13.76634 -13.26153 -12.97467 -12.69579 -12.34702 -12.26648 -12.16343 -11.87376 -11.73439 -11.49334 -10.92940 -10.79592 -10.66207 -9.95451 -9.67213 -8.30079 -6.46930 1.41788 1.46151 1.54444 1.74721 2.32359 2.59942 2.81578 3.04488 3.18470 3.74551 3.91251 4.01366 4.16594 4.32797 4.36237 4.51116 4.60238 4.86470 4.88905 4.99983 5.15683 5.17707 5.24862 5.29760 5.36201 5.42397 5.50841 5.75264 5.86278 6.64844 7.01129 7.23174 7.60736 8.81957 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.058999 B = 0.006602 C = 0.006122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 474.467949 B = 4239.865464 C = 4572.331252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.285 1.285 5 H -0.262 1.262 6 H -0.262 1.262 7 C -0.558 4.558 8 H 0.082 0.918 9 C 0.271 3.729 10 N -0.711 5.711 11 C 0.512 3.488 12 O -0.573 6.573 13 C -0.195 4.195 14 H 0.148 0.852 15 C -0.132 4.132 16 C -0.087 4.087 17 H 0.143 0.857 18 C -0.117 4.117 19 C -0.169 4.169 20 C -0.142 4.142 21 H 0.269 0.731 22 H -0.016 1.016 23 H -0.015 1.015 24 H 0.404 0.596 25 H 0.141 0.859 26 H 0.080 0.920 27 H 0.082 0.918 28 H 0.110 0.890 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.363 -13.860 -0.209 16.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.210 1.210 5 H -0.186 1.186 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.100 0.900 9 C 0.148 3.852 10 N -0.361 5.361 11 C 0.300 3.700 12 O -0.453 6.453 13 C -0.216 4.216 14 H 0.165 0.835 15 C -0.169 4.169 16 C -0.105 4.105 17 H 0.161 0.839 18 C -0.136 4.136 19 C -0.206 4.206 20 C -0.179 4.179 21 H 0.077 0.923 22 H 0.002 0.998 23 H 0.002 0.998 24 H 0.239 0.761 25 H 0.159 0.841 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.117 0.883 30 H 0.080 0.920 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 7.350 -13.877 -0.208 15.705 hybrid contribution 0.035 1.427 0.021 1.427 sum 7.385 -12.450 -0.188 14.477 Atomic orbital electron populations 1.70139 1.08312 1.28617 1.49987 1.26088 0.95785 1.03963 0.93802 0.85194 0.77912 0.76526 0.79511 1.20999 1.18630 1.18649 1.21611 0.94257 0.90764 1.52956 0.90003 1.18450 0.88646 0.84407 0.93713 1.46220 1.10893 1.05623 1.73364 1.20552 0.89363 0.84137 0.75933 1.90690 1.18546 1.84783 1.51318 1.22329 1.01185 0.90751 1.07329 0.83463 1.23116 1.03813 0.99909 0.90098 1.21939 0.93217 0.93630 1.01734 0.83902 1.21487 0.92928 1.04813 0.94338 1.23306 1.03120 0.92594 1.01605 1.22294 1.00470 0.94597 1.00550 0.92256 0.99838 0.99755 0.76050 0.84129 0.90183 0.89933 0.87196 0.88344 0.92010 0.91444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.88 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.99 42.85 29.54 68.60 2.03 44.88 16 4 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 5 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 6 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 7 C -0.56 -31.06 9.28 25.60 0.24 -30.82 16 8 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 9 C 0.27 15.25 5.43 85.63 0.46 15.71 16 10 N -0.71 -31.11 5.55 -466.80 -2.59 -33.70 16 11 C 0.51 20.82 7.45 87.66 0.65 21.47 16 12 O -0.57 -27.54 11.54 -3.02 -0.03 -27.57 16 13 C -0.20 -5.34 6.18 -11.54 -0.07 -5.41 16 14 H 0.15 3.12 8.14 -2.39 -0.02 3.10 16 15 C -0.13 -2.93 9.96 30.60 0.30 -2.63 16 16 C -0.09 -2.07 5.87 -10.79 -0.06 -2.13 16 17 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 18 C -0.12 -3.45 4.48 -10.79 -0.05 -3.50 16 19 C -0.17 -4.13 10.25 30.59 0.31 -3.81 16 20 C -0.14 -4.82 7.08 30.59 0.22 -4.61 16 21 H 0.27 15.39 8.31 -92.70 -0.77 14.62 16 22 H -0.02 -1.03 8.14 -2.38 -0.02 -1.05 16 23 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 24 H 0.40 14.87 8.32 -92.70 -0.77 14.09 16 25 H 0.14 2.03 8.14 -2.39 -0.02 2.01 16 26 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 28 H 0.11 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.10 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.06 2.39 8.06 -2.39 -0.02 2.37 16 31 H 0.07 2.47 7.96 -2.39 -0.02 2.45 16 Total: -1.00 -70.39 266.17 2.50 -67.89 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.34 Total: 20.47 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 2.47 Total: -15.08 kcal Atomic # 7 Polarization: -88.28 SS G_CDS: -2.30 Total: -90.58 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.03 Total: -27.57 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -70.39 2.50 -67.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308192764.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.373 kcal (2) G-P(sol) polarization free energy of solvation -70.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.018 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds