Wall clock time and date at job start Sun Mar 29 2020 21:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48504 * 109.46994 * 240.00178 * 3 2 1 5 5 H 1.48498 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47014 * 120.00139 * 3 2 1 7 7 C 1.37881 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00015 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47102 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99996 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00326 * 179.97438 * 11 10 9 14 14 H 1.09000 * 115.55003 * 331.62200 * 13 11 10 15 15 C 1.52998 * 117.50177 * 185.94616 * 13 11 10 16 16 C 1.52999 * 117.49963 * 117.28194 * 13 11 10 17 17 H 1.08994 * 117.50331 * 214.98078 * 16 13 11 18 18 C 1.52996 * 117.49919 * 0.02562 * 16 13 11 19 19 C 1.53000 * 117.49770 * 253.72158 * 18 16 13 20 20 C 1.52996 * 59.99968 * 252.50517 * 19 18 16 21 21 H 0.97007 * 120.00196 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47123 * 300.00456 * 9 7 2 23 23 H 1.09000 * 109.46713 * 60.00340 * 9 7 2 24 24 H 0.97000 * 119.99629 * 0.02562 * 10 9 7 25 25 H 1.08996 * 117.49997 * 359.97438 * 15 13 11 26 26 H 1.08998 * 117.49732 * 144.99956 * 15 13 11 27 27 H 1.09002 * 115.55217 * 39.42429 * 18 16 13 28 28 H 1.08997 * 117.50217 * 359.97438 * 19 18 16 29 29 H 1.09004 * 117.50179 * 145.02223 * 19 18 16 30 30 H 1.09000 * 117.50174 * 252.50621 * 20 19 18 31 31 H 1.09000 * 117.51648 * 107.48136 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0020 13 6 2.7329 -6.0289 -0.0016 14 1 3.6960 -5.8238 -0.4690 15 6 2.1659 -7.4429 -0.1428 16 6 2.7191 -6.9706 1.2041 17 1 3.6730 -7.3854 1.5296 18 6 1.7119 -6.6776 2.3179 19 6 2.2531 -6.0919 3.6236 20 6 1.7778 -7.5454 3.5762 21 1 -0.4851 0.8401 -0.0004 22 1 0.6246 -2.5571 0.8896 23 1 0.6240 -2.5567 -0.8903 24 1 3.1566 -3.4354 -0.0002 25 1 1.0846 -7.5447 -0.2348 26 1 2.7560 -8.1681 -0.7031 27 1 0.7281 -6.3454 1.9866 28 1 3.3268 -5.9156 3.6893 29 1 1.6253 -5.3741 4.1516 30 1 0.8374 -7.7838 4.0730 31 1 2.5385 -8.3253 3.6105 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308192766.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:43 Heat of formation + Delta-G solvation = -1.934954 kcal Electronic energy + Delta-G solvation = -13379.427732 eV Core-core repulsion = 11047.935196 eV Total energy + Delta-G solvation = -2331.492537 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.51540 -37.28707 -34.87435 -34.03386 -32.26549 -27.55150 -24.38032 -23.51122 -22.24119 -21.70884 -20.33547 -19.15803 -16.96038 -16.02591 -15.71561 -15.04021 -14.48048 -14.15097 -13.94542 -13.50594 -12.84362 -12.04399 -11.89632 -11.73036 -11.48493 -11.27699 -11.10132 -10.95987 -10.86218 -10.55063 -10.30043 -9.90516 -9.39093 -9.38622 -8.95717 -8.70885 -7.82821 -6.15084 -4.21902 3.11583 3.26188 3.30800 3.32430 3.82948 4.05514 4.35441 4.39521 4.66352 4.98876 5.02788 5.20839 5.26183 5.38078 5.40620 5.44945 5.62012 5.72100 5.91162 5.99481 6.12992 6.23477 6.31296 6.53531 7.33755 7.48989 7.54439 7.69596 7.99325 8.68263 8.81033 9.16521 9.44939 10.95166 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.043563 B = 0.006788 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.587422 B = 4124.149134 C = 4330.736672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.251 3.749 10 N -0.708 5.708 11 C 0.531 3.469 12 O -0.558 6.558 13 C -0.185 4.185 14 H 0.117 0.883 15 C -0.145 4.145 16 C -0.094 4.094 17 H 0.107 0.893 18 C -0.127 4.127 19 C -0.175 4.175 20 C -0.179 4.179 21 H 0.266 0.734 22 H 0.026 0.974 23 H 0.026 0.974 24 H 0.390 0.610 25 H 0.107 0.893 26 H 0.098 0.902 27 H 0.118 0.882 28 H 0.092 0.908 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 -12.226 3.430 14.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.130 3.870 10 N -0.355 5.355 11 C 0.316 3.684 12 O -0.438 6.438 13 C -0.206 4.206 14 H 0.135 0.865 15 C -0.182 4.182 16 C -0.113 4.113 17 H 0.125 0.875 18 C -0.145 4.145 19 C -0.212 4.212 20 C -0.216 4.216 21 H 0.076 0.924 22 H 0.044 0.956 23 H 0.044 0.956 24 H 0.223 0.777 25 H 0.126 0.874 26 H 0.116 0.884 27 H 0.136 0.864 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.110 0.890 31 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.174 -12.200 3.426 14.096 hybrid contribution 0.990 1.142 -0.056 1.512 sum 7.164 -11.057 3.371 13.599 Atomic orbital electron populations 1.69967 1.06115 1.27384 1.48908 1.24951 0.94910 0.99428 0.94714 0.86476 0.79421 0.82327 0.78691 1.20064 1.21057 1.20066 1.21203 0.93237 0.90505 1.53215 0.91965 1.19084 0.88315 0.81962 0.97640 1.46373 1.11065 1.05988 1.72073 1.19424 0.88385 0.83654 0.76943 1.90620 1.16727 1.84872 1.51614 1.22412 1.01231 0.91901 1.05050 0.86518 1.22985 1.02411 0.94329 0.98495 1.21701 0.99406 1.01689 0.88516 0.87456 1.21882 1.00511 1.04124 0.88026 1.22901 1.01366 0.96042 1.00916 1.22904 1.02879 0.94003 1.01782 0.92408 0.95614 0.95606 0.77728 0.87438 0.88361 0.86361 0.88914 0.88729 0.88985 0.89078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.29 55.43 0.74 -25.66 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -14.97 9.28 -34.44 -0.32 -15.29 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.25 6.78 5.43 -5.19 -0.03 6.75 16 10 N -0.71 -15.41 5.55 -61.47 -0.34 -15.76 16 11 C 0.53 10.95 6.79 -10.99 -0.07 10.87 16 12 O -0.56 -13.57 14.96 5.55 0.08 -13.49 16 13 C -0.18 -2.79 6.19 -91.78 -0.57 -3.36 16 14 H 0.12 1.47 8.14 -51.93 -0.42 1.05 16 15 C -0.14 -1.92 9.77 -26.69 -0.26 -2.18 16 16 C -0.09 -1.25 5.85 -90.58 -0.53 -1.78 16 17 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 18 C -0.13 -1.87 5.07 -90.62 -0.46 -2.33 16 19 C -0.18 -2.35 10.25 -26.73 -0.27 -2.63 16 20 C -0.18 -2.12 10.25 -26.73 -0.27 -2.39 16 21 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 22 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 23 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.39 7.36 8.32 -40.82 -0.34 7.02 16 25 H 0.11 1.62 7.68 -51.93 -0.40 1.22 16 26 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 27 H 0.12 2.13 6.73 -51.93 -0.35 1.78 16 28 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 270.90 15.07 4.08 4.08 Total: -1.00 -31.48 270.90 -7.77 -39.25 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -4.43 Total: 6.21 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.89 Total: -10.65 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.40 Total: -41.41 kcal Atomic # 8 Polarization: -13.57 SS G_CDS: 0.08 Total: -13.49 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -31.48 -7.77 -39.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308192766.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.318 kcal (2) G-P(sol) polarization free energy of solvation -31.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds