Wall clock time and date at job start Sun Mar 29 2020 21:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 120.00108 * 2 1 4 4 H 1.48504 * 109.46994 * 240.00178 * 3 2 1 5 5 H 1.48498 * 109.46955 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47014 * 120.00139 * 3 2 1 7 7 C 1.37881 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99988 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00015 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47102 * 180.02562 * 9 7 2 11 11 C 1.34772 * 119.99996 * 180.02562 * 10 9 7 12 12 O 1.21284 * 120.00222 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00326 * 179.97438 * 11 10 9 14 14 H 1.09000 * 115.55003 * 331.62200 * 13 11 10 15 15 C 1.52998 * 117.50177 * 185.94616 * 13 11 10 16 16 C 1.52999 * 117.49963 * 117.28194 * 13 11 10 17 17 H 1.08994 * 117.50331 * 214.98078 * 16 13 11 18 18 C 1.52996 * 117.49919 * 0.02562 * 16 13 11 19 19 C 1.53000 * 117.49770 * 253.72158 * 18 16 13 20 20 C 1.52996 * 59.99968 * 252.50517 * 19 18 16 21 21 H 0.97007 * 120.00196 * 0.02562 * 1 2 3 22 22 H 1.08995 * 109.47123 * 300.00456 * 9 7 2 23 23 H 1.09000 * 109.46713 * 60.00340 * 9 7 2 24 24 H 0.97000 * 119.99629 * 0.02562 * 10 9 7 25 25 H 1.08996 * 117.49997 * 359.97438 * 15 13 11 26 26 H 1.08998 * 117.49732 * 144.99956 * 15 13 11 27 27 H 1.09002 * 115.55217 * 39.42429 * 18 16 13 28 28 H 1.08997 * 117.50217 * 359.97438 * 19 18 16 29 29 H 1.09004 * 117.50179 * 145.02223 * 19 18 16 30 30 H 1.09000 * 117.50174 * 252.50621 * 20 19 18 31 31 H 1.09000 * 117.51648 * 107.48136 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5613 -5.1050 -0.0020 13 6 2.7329 -6.0289 -0.0016 14 1 3.6960 -5.8238 -0.4690 15 6 2.1659 -7.4429 -0.1428 16 6 2.7191 -6.9706 1.2041 17 1 3.6730 -7.3854 1.5296 18 6 1.7119 -6.6776 2.3179 19 6 2.2531 -6.0919 3.6236 20 6 1.7778 -7.5454 3.5762 21 1 -0.4851 0.8401 -0.0004 22 1 0.6246 -2.5571 0.8896 23 1 0.6240 -2.5567 -0.8903 24 1 3.1566 -3.4354 -0.0002 25 1 1.0846 -7.5447 -0.2348 26 1 2.7560 -8.1681 -0.7031 27 1 0.7281 -6.3454 1.9866 28 1 3.3268 -5.9156 3.6893 29 1 1.6253 -5.3741 4.1516 30 1 0.8374 -7.7838 4.0730 31 1 2.5385 -8.3253 3.6105 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308192766.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:43 Heat of formation + Delta-G solvation = -23.147364 kcal Electronic energy + Delta-G solvation = -13380.347571 eV Core-core repulsion = 11047.935196 eV Total energy + Delta-G solvation = -2332.412376 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.00139 -38.62901 -36.27686 -35.78623 -34.33429 -29.61635 -26.02727 -24.71603 -23.63011 -23.10954 -21.58606 -20.77483 -18.71642 -17.60574 -17.22016 -16.79223 -16.15794 -15.70134 -15.51074 -14.73258 -14.39644 -14.01339 -13.93919 -13.07434 -12.97829 -12.70349 -12.51718 -12.32036 -12.26522 -12.10376 -11.68096 -11.52615 -10.99923 -10.80710 -10.77966 -10.37785 -9.81317 -8.30939 -6.48252 1.41553 1.46176 1.54480 1.62907 2.31059 2.57487 2.65278 3.03597 3.26703 3.55562 3.86384 3.89971 4.07682 4.28335 4.34066 4.36972 4.41472 4.77203 4.89072 4.97455 5.02972 5.12230 5.20607 5.23365 5.26263 5.39575 5.48612 5.69715 5.83111 6.62794 6.93038 7.21463 7.51291 8.81324 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.043563 B = 0.006788 C = 0.006464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 642.587422 B = 4124.149134 C = 4330.736672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.261 1.261 7 C -0.558 4.558 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.705 5.705 11 C 0.524 3.476 12 O -0.605 6.605 13 C -0.197 4.197 14 H 0.154 0.846 15 C -0.137 4.137 16 C -0.075 4.075 17 H 0.150 0.850 18 C -0.159 4.159 19 C -0.183 4.183 20 C -0.149 4.149 21 H 0.269 0.731 22 H -0.017 1.017 23 H -0.015 1.015 24 H 0.407 0.593 25 H 0.078 0.922 26 H 0.140 0.860 27 H 0.070 0.930 28 H 0.111 0.889 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.578 -13.079 3.776 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.354 5.354 11 C 0.312 3.688 12 O -0.488 6.488 13 C -0.218 4.218 14 H 0.171 0.829 15 C -0.174 4.174 16 C -0.093 4.093 17 H 0.168 0.832 18 C -0.178 4.178 19 C -0.220 4.220 20 C -0.186 4.186 21 H 0.078 0.922 22 H 0.001 0.999 23 H 0.002 0.998 24 H 0.243 0.757 25 H 0.097 0.903 26 H 0.158 0.842 27 H 0.089 0.911 28 H 0.130 0.870 29 H 0.095 0.905 30 H 0.112 0.888 31 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 9.579 -13.085 3.773 16.650 hybrid contribution -0.168 1.342 -0.138 1.359 sum 9.412 -11.744 3.635 15.483 Atomic orbital electron populations 1.70141 1.08368 1.28688 1.49891 1.26109 0.95792 1.04028 0.93728 0.85179 0.77907 0.76391 0.79575 1.18533 1.20980 1.18579 1.21596 0.94306 0.90572 1.53096 0.89804 1.18496 0.88691 0.84490 0.93736 1.46131 1.11066 1.05484 1.72679 1.20492 0.88915 0.84438 0.74906 1.90597 1.19441 1.85566 1.53210 1.22405 1.01104 0.90128 1.08155 0.82886 1.23107 1.01461 0.93544 0.99264 1.21896 1.00385 0.99661 0.87385 0.83212 1.21820 0.99242 1.06948 0.89781 1.22969 1.02091 0.97182 0.99742 1.23009 1.03649 0.93577 0.98316 0.92204 0.99879 0.99751 0.75703 0.90337 0.84170 0.91127 0.87025 0.90548 0.88779 0.85955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.44 13.29 21.45 0.28 -57.15 16 2 C 0.00 0.17 5.46 84.66 0.46 0.63 16 3 Si 0.99 42.87 29.54 68.60 2.03 44.89 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.56 -31.19 9.28 25.60 0.24 -30.95 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.27 15.37 5.43 85.63 0.46 15.83 16 10 N -0.70 -31.49 5.55 -466.80 -2.59 -34.08 16 11 C 0.52 22.22 6.79 87.66 0.60 22.82 16 12 O -0.61 -31.44 14.96 -3.04 -0.05 -31.49 16 13 C -0.20 -5.57 6.19 -11.54 -0.07 -5.64 16 14 H 0.15 3.22 8.14 -2.39 -0.02 3.20 16 15 C -0.14 -3.31 9.77 30.62 0.30 -3.01 16 16 C -0.07 -1.76 5.85 -10.77 -0.06 -1.83 16 17 H 0.15 2.36 8.14 -2.39 -0.02 2.34 16 18 C -0.16 -4.62 5.07 -10.80 -0.05 -4.67 16 19 C -0.18 -4.71 10.25 30.59 0.31 -4.39 16 20 C -0.15 -3.18 10.25 30.59 0.31 -2.86 16 21 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 22 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 23 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 24 H 0.41 15.11 8.32 -92.71 -0.77 14.34 16 25 H 0.08 2.39 7.68 -2.39 -0.02 2.37 16 26 H 0.14 2.24 8.14 -2.39 -0.02 2.22 16 27 H 0.07 2.73 6.73 -2.39 -0.02 2.71 16 28 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -73.55 270.90 2.52 -71.03 By element: Atomic # 1 Polarization: 20.51 SS G_CDS: 0.35 Total: 20.86 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: 2.50 Total: -14.07 kcal Atomic # 7 Polarization: -88.92 SS G_CDS: -2.30 Total: -91.23 kcal Atomic # 8 Polarization: -31.44 SS G_CDS: -0.05 Total: -31.49 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -73.55 2.52 -71.03 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308192766.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.888 kcal (2) G-P(sol) polarization free energy of solvation -73.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds