Wall clock time and date at job start Sun Mar 29 2020 22:00:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47648 * 2 1 4 4 C 1.36940 * 119.99882 * 84.52023 * 3 2 1 5 5 H 1.07999 * 120.00219 * 319.93397 * 4 3 2 6 6 C 1.38810 * 119.99469 * 139.92686 * 4 3 2 7 7 N 1.31615 * 120.00491 * 348.45574 * 6 4 3 8 8 Si 1.86806 * 119.99642 * 168.45495 * 6 4 3 9 9 H 1.48496 * 109.47007 * 0.02562 * 8 6 4 10 10 H 1.48509 * 109.46927 * 120.00057 * 8 6 4 11 11 H 1.48496 * 109.46884 * 239.99844 * 8 6 4 12 12 C 1.46497 * 119.99900 * 264.25323 * 3 2 1 13 13 C 1.50700 * 109.47502 * 83.40607 * 12 3 2 14 14 C 1.35312 * 126.03813 * 259.18662 * 13 12 3 15 15 N 1.34949 * 107.74538 * 179.87216 * 14 13 12 16 16 H 0.97007 * 126.03974 * 180.15102 * 15 14 13 17 17 N 1.40085 * 107.92735 * 0.38718 * 15 14 13 18 18 C 1.30838 * 108.20064 * 359.76071 * 17 15 14 19 19 C 1.50704 * 125.90063 * 180.02562 * 18 17 15 20 20 H 1.09001 * 109.47287 * 179.97438 * 1 2 3 21 21 H 1.08996 * 109.46923 * 300.00718 * 1 2 3 22 22 H 1.09001 * 109.46876 * 60.00144 * 1 2 3 23 23 H 1.09007 * 109.47313 * 239.99487 * 2 1 3 24 24 H 1.09008 * 109.46798 * 120.00273 * 2 1 3 25 25 H 0.97006 * 120.00226 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46874 * 203.40750 * 12 3 2 27 27 H 1.08997 * 109.47186 * 323.40496 * 12 3 2 28 28 H 1.08001 * 126.13005 * 0.02562 * 14 13 12 29 29 H 1.09004 * 109.47115 * 274.73843 * 19 18 17 30 30 H 1.09006 * 109.47069 * 34.73143 * 19 18 17 31 31 H 1.09000 * 109.47548 * 154.73266 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.1400 2.0644 1.1805 5 1 1.3840 1.9606 1.9448 6 6 3.2349 2.8903 1.3948 7 7 4.2629 2.8465 0.5741 8 14 3.2493 4.0638 2.8481 9 1 1.9845 3.9203 3.6128 10 1 4.4000 3.7443 3.7310 11 1 3.3754 5.4593 2.3562 12 6 2.3825 2.0293 -1.2623 13 6 1.1439 2.5839 -1.9178 14 6 0.4613 2.0161 -2.9388 15 7 -0.5823 2.8194 -3.2329 16 1 -1.2462 2.6631 -3.9227 17 7 -0.5346 3.9218 -2.3699 18 6 0.5004 3.7796 -1.5822 19 6 0.9254 4.7381 -0.4997 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 5.0282 3.4234 0.7241 26 1 3.0835 2.8404 -1.0653 27 1 2.8481 1.2995 -1.9245 28 1 0.7063 1.0853 -3.4288 29 1 1.5451 5.5234 -0.9326 30 1 0.0423 5.1834 -0.0414 31 1 1.4960 4.2010 0.2579 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308207884.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:13 Heat of formation + Delta-G solvation = 68.622912 kcal Electronic energy + Delta-G solvation = -14349.956699 eV Core-core repulsion = 12053.816533 eV Total energy + Delta-G solvation = -2296.140167 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.90973 -37.61816 -33.83708 -33.53898 -31.97880 -30.08334 -28.69783 -26.91247 -24.99894 -22.19141 -21.65798 -20.19166 -18.74415 -18.12391 -16.70900 -15.85737 -15.48774 -15.19009 -14.94632 -14.42046 -14.03752 -13.77105 -13.54505 -13.16945 -12.92777 -12.84131 -12.67979 -12.48288 -12.29425 -11.92968 -11.78958 -11.44448 -11.24117 -10.38720 -10.07200 -9.12526 -8.36769 -7.69456 -5.35762 1.13128 1.48428 1.53644 1.60938 2.02309 2.24423 2.58115 3.38923 3.97834 4.05181 4.20082 4.50866 4.62674 4.72425 4.83452 4.86199 4.93573 4.97182 5.12703 5.28610 5.35493 5.42275 5.51275 5.65419 5.77595 5.93066 6.02513 6.63214 6.69913 6.97220 7.32310 8.00590 8.54195 9.26391 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.030513 B = 0.013592 C = 0.011132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.436376 B = 2059.593897 C = 2514.574622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.141 3.859 3 N -0.593 5.593 4 C -0.245 4.245 5 H 0.044 0.956 6 C -0.021 4.021 7 N -0.918 5.918 8 Si 0.935 3.065 9 H -0.271 1.271 10 H -0.293 1.293 11 H -0.282 1.282 12 C 0.218 3.782 13 C -0.243 4.243 14 C 0.057 3.943 15 N -0.474 5.474 16 H 0.448 0.552 17 N -0.338 5.338 18 C 0.079 3.921 19 C -0.085 4.085 20 H 0.062 0.938 21 H 0.024 0.976 22 H 0.042 0.958 23 H 0.050 0.950 24 H 0.030 0.970 25 H 0.251 0.749 26 H 0.078 0.922 27 H 0.029 0.971 28 H 0.202 0.798 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.476 -2.293 -6.329 9.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 N -0.314 5.314 4 C -0.376 4.376 5 H 0.061 0.939 6 C -0.218 4.218 7 N -0.562 5.562 8 Si 0.764 3.236 9 H -0.196 1.196 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.091 3.909 13 C -0.256 4.256 14 C -0.090 4.090 15 N -0.184 5.184 16 H 0.294 0.706 17 N -0.164 5.164 18 C -0.086 4.086 19 C -0.143 4.143 20 H 0.081 0.919 21 H 0.043 0.957 22 H 0.061 0.939 23 H 0.069 0.931 24 H 0.048 0.952 25 H 0.061 0.939 26 H 0.096 0.904 27 H 0.047 0.953 28 H 0.218 0.782 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.290 -1.504 -6.607 9.953 hybrid contribution 0.493 0.097 0.685 0.849 sum -6.798 -1.408 -5.923 9.125 Atomic orbital electron populations 1.22129 0.98500 1.00086 1.00075 1.20901 0.92832 0.86003 0.98747 1.43932 1.76181 1.09144 1.02172 1.19055 1.01514 1.22481 0.94587 0.93871 1.25682 0.94447 1.02446 0.99258 1.69968 1.06291 1.40751 1.39233 0.85719 0.77479 0.79787 0.80631 1.19589 1.22004 1.20783 1.19133 0.90590 0.96680 0.84468 1.21363 1.05095 0.97496 1.01655 1.22673 0.89748 0.98037 0.98589 1.46042 1.24497 1.17025 1.30853 0.70572 1.77041 1.22468 1.09011 1.07865 1.22272 0.93182 0.96699 0.96480 1.20368 1.01222 0.96930 0.95821 0.91863 0.95663 0.93897 0.93145 0.95179 0.93885 0.90406 0.95306 0.78164 0.91373 0.91551 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 10.21 71.98 0.73 -4.60 16 2 C 0.14 5.75 6.42 86.38 0.55 6.31 16 3 N -0.59 -28.58 2.42 -706.33 -1.71 -30.30 16 4 C -0.25 -12.99 8.02 84.03 0.67 -12.32 16 5 H 0.04 2.37 7.86 -2.91 -0.02 2.34 16 6 C -0.02 -1.13 4.00 84.86 0.34 -0.79 16 7 N -0.92 -51.21 11.13 21.65 0.24 -50.97 16 8 Si 0.94 43.17 29.11 68.60 2.00 45.17 16 9 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 11 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 12 C 0.22 10.04 5.25 85.63 0.45 10.49 16 13 C -0.24 -9.81 5.21 -20.14 -0.11 -9.92 16 14 C 0.06 1.79 11.01 83.54 0.92 2.71 16 15 N -0.47 -14.08 7.36 -57.59 -0.42 -14.51 16 16 H 0.45 9.28 8.96 -213.32 -1.91 7.37 16 17 N -0.34 -12.97 12.70 -47.38 -0.60 -13.57 16 18 C 0.08 3.33 7.22 43.10 0.31 3.64 16 19 C -0.08 -3.55 10.30 71.24 0.73 -2.82 16 20 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 21 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 22 H 0.04 1.54 6.73 -2.39 -0.02 1.52 16 23 H 0.05 1.86 7.90 -2.38 -0.02 1.84 16 24 H 0.03 1.27 8.08 -2.38 -0.02 1.25 16 25 H 0.25 13.63 8.31 -92.70 -0.77 12.86 16 26 H 0.08 4.14 5.41 -2.39 -0.01 4.12 16 27 H 0.03 1.26 7.96 -2.39 -0.02 1.24 16 28 H 0.20 4.60 8.06 -2.91 -0.02 4.58 16 29 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.07 2.53 8.14 -2.38 -0.02 2.51 16 31 H 0.09 4.15 4.30 -2.39 -0.01 4.14 16 Total: -1.00 -62.07 257.82 3.33 -58.74 By element: Atomic # 1 Polarization: 13.51 SS G_CDS: -0.78 Total: 12.73 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: 4.61 Total: -7.30 kcal Atomic # 7 Polarization: -106.84 SS G_CDS: -2.50 Total: -109.34 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.00 Total: 45.17 kcal Total: -62.07 3.33 -58.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308207884.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.366 kcal (2) G-P(sol) polarization free energy of solvation -62.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds