Wall clock time and date at job start Sun Mar 29 2020 22:00:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47284 * 2 1 4 4 C 1.36937 * 119.99508 * 274.69871 * 3 2 1 5 5 H 1.07996 * 119.99979 * 37.10194 * 4 3 2 6 6 C 1.38809 * 119.99618 * 217.09985 * 4 3 2 7 7 N 1.31616 * 120.00195 * 22.79696 * 6 4 3 8 8 Si 1.86806 * 119.99886 * 202.79443 * 6 4 3 9 9 H 1.48494 * 109.47040 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46942 * 120.00414 * 8 6 4 11 11 H 1.48499 * 109.47248 * 240.00313 * 8 6 4 12 12 C 1.46495 * 119.99932 * 94.69677 * 3 2 1 13 13 C 1.50700 * 109.47014 * 269.99820 * 12 3 2 14 14 C 1.35313 * 126.12383 * 95.00609 * 13 12 3 15 15 C 1.39878 * 107.91973 * 179.97438 * 14 13 12 16 16 C 1.50692 * 125.90043 * 179.97438 * 15 14 13 17 17 N 1.30838 * 108.20074 * 0.02562 * 15 14 13 18 18 N 1.34950 * 126.12686 * 274.69127 * 13 12 3 19 19 H 0.96997 * 126.03457 * 0.03749 * 18 13 12 20 20 H 1.08999 * 109.47135 * 300.00492 * 1 2 3 21 21 H 1.09004 * 109.46747 * 60.00248 * 1 2 3 22 22 H 1.09002 * 109.47306 * 180.02562 * 1 2 3 23 23 H 1.08991 * 109.47396 * 239.99372 * 2 1 3 24 24 H 1.09004 * 109.46747 * 119.99752 * 2 1 3 25 25 H 0.97001 * 120.00022 * 179.97438 * 7 6 4 26 26 H 1.08999 * 109.47266 * 30.00201 * 12 3 2 27 27 H 1.09001 * 109.46552 * 150.00079 * 12 3 2 28 28 H 1.07995 * 126.04447 * 359.93934 * 14 13 12 29 29 H 1.08999 * 109.47012 * 90.00196 * 16 15 14 30 30 H 1.09002 * 109.47490 * 210.00299 * 16 15 14 31 31 H 1.09008 * 109.47330 * 330.00159 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1550 2.0591 -1.1820 5 1 1.4346 1.9149 -1.9735 6 6 3.2194 2.9315 -1.3627 7 7 4.3120 2.7948 -0.6416 8 14 3.1013 4.2994 -2.6293 9 1 1.7789 4.2381 -3.3021 10 1 3.2523 5.6134 -1.9542 11 1 4.1785 4.1344 -3.6380 12 6 2.3605 2.0372 1.2644 13 6 1.1427 2.7342 1.8143 14 6 0.2767 2.2290 2.7229 15 6 -0.7082 3.1933 2.9613 16 6 -1.8738 3.0511 3.9057 17 7 -0.4431 4.2396 2.2218 18 7 0.7240 3.9762 1.4931 19 1 1.1537 4.5790 0.8664 20 1 -0.3633 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8898 24 1 1.8932 -0.5138 0.8901 25 1 5.0560 3.4043 -0.7681 26 1 2.7056 1.2904 1.9794 27 1 3.1507 2.7680 1.0924 28 1 0.3351 1.2534 3.1825 29 1 -1.5864 3.4094 4.8942 30 1 -2.7144 3.6387 3.5365 31 1 -2.1639 2.0023 3.9696 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308223755.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:10 Heat of formation + Delta-G solvation = 79.416235 kcal Electronic energy + Delta-G solvation = -14050.296724 eV Core-core repulsion = 11754.624591 eV Total energy + Delta-G solvation = -2295.672133 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.40991 -35.99783 -32.33665 -31.99328 -30.28162 -28.62431 -27.26507 -25.61763 -23.52706 -20.64988 -19.71892 -19.14301 -17.05072 -16.27356 -14.88530 -14.35186 -13.83032 -13.71803 -13.34563 -12.86811 -12.63029 -12.45483 -12.27915 -12.18516 -11.49397 -11.25742 -11.11319 -10.85136 -10.65021 -10.29065 -10.17349 -9.88135 -9.77525 -8.66238 -8.54409 -7.79367 -6.75796 -5.97389 -3.53071 2.69805 3.22305 3.33971 3.37560 3.46591 3.68116 4.35146 5.12060 5.33217 5.46565 5.51935 5.87119 5.93885 6.05735 6.06760 6.23714 6.36564 6.38547 6.45783 6.54924 6.64832 6.89662 6.93628 7.17350 7.33635 7.40727 7.70057 8.11607 8.33509 8.49225 9.01109 9.63100 10.22675 11.03078 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031129 B = 0.011596 C = 0.009749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 899.277479 B = 2414.080940 C = 2871.359346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.143 3.857 3 N -0.574 5.574 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.011 3.989 7 N -0.882 5.882 8 Si 0.889 3.111 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.286 1.286 12 C 0.190 3.810 13 C 0.119 3.881 14 C -0.298 4.298 15 C 0.063 3.937 16 C -0.066 4.066 17 N -0.324 5.324 18 N -0.463 5.463 19 H 0.435 0.565 20 H 0.052 0.948 21 H 0.045 0.955 22 H 0.035 0.965 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.257 0.743 26 H 0.057 0.943 27 H 0.104 0.896 28 H 0.133 0.867 29 H 0.068 0.932 30 H 0.064 0.936 31 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.897 -1.586 5.799 8.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.017 3.983 3 N -0.294 5.294 4 C -0.389 4.389 5 H 0.079 0.921 6 C -0.190 4.190 7 N -0.524 5.524 8 Si 0.718 3.282 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.213 1.213 12 C 0.062 3.938 13 C -0.014 4.014 14 C -0.329 4.329 15 C -0.103 4.103 16 C -0.124 4.124 17 N -0.149 5.149 18 N -0.170 5.170 19 H 0.279 0.721 20 H 0.072 0.928 21 H 0.064 0.936 22 H 0.054 0.946 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.151 0.849 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -6.090 -0.374 5.452 8.182 hybrid contribution 0.400 0.272 -0.840 0.970 sum -5.690 -0.101 4.612 7.325 Atomic orbital electron populations 1.22353 0.99760 0.99040 1.01756 1.20879 0.91870 0.86523 0.98985 1.43710 1.75736 1.08419 1.01501 1.19077 1.05298 1.21189 0.93362 0.92054 1.25184 0.94136 1.01455 0.98208 1.70023 1.03055 1.36821 1.42496 0.86437 0.78051 0.82236 0.81468 1.19923 1.21226 1.21259 1.19765 0.90665 0.96676 0.86731 1.23000 0.99429 0.85508 0.93500 1.20943 1.00159 1.02373 1.09386 1.22128 0.97652 0.92692 0.97857 1.20054 0.93780 1.02230 0.96374 1.77066 1.02128 1.23810 1.11890 1.46253 1.20865 1.13901 1.35948 0.72134 0.92847 0.93601 0.94551 0.93529 0.94478 0.93300 0.92491 0.87877 0.84908 0.91296 0.91676 0.91063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.19 10.21 37.16 0.38 -2.81 16 2 C 0.14 2.96 6.44 -4.04 -0.03 2.94 16 3 N -0.57 -13.62 2.42 -174.62 -0.42 -14.04 16 4 C -0.26 -6.76 9.45 -15.06 -0.14 -6.90 16 5 H 0.06 1.65 7.93 -52.49 -0.42 1.23 16 6 C 0.01 0.28 4.92 -17.43 -0.09 0.20 16 7 N -0.88 -23.85 11.53 55.49 0.64 -23.21 16 8 Si 0.89 20.54 29.61 -169.99 -5.03 15.51 16 9 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 12 C 0.19 4.25 5.88 -5.20 -0.03 4.22 16 13 C 0.12 2.49 6.67 -82.26 -0.55 1.94 16 14 C -0.30 -5.68 9.35 -40.01 -0.37 -6.06 16 15 C 0.06 1.15 7.22 -82.41 -0.59 0.56 16 16 C -0.07 -0.88 10.45 36.00 0.38 -0.50 16 17 N -0.32 -6.64 12.70 33.67 0.43 -6.21 16 18 N -0.46 -9.72 7.36 33.48 0.25 -9.47 16 19 H 0.44 8.87 8.96 -182.61 -1.64 7.24 16 20 H 0.05 1.03 6.65 -51.93 -0.35 0.68 16 21 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 22 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 24 H 0.04 0.70 7.84 -51.93 -0.41 0.30 16 25 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 26 H 0.06 1.19 7.86 -51.93 -0.41 0.78 16 27 H 0.10 2.55 5.54 -51.93 -0.29 2.27 16 28 H 0.13 2.27 8.06 -52.49 -0.42 1.85 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 LS Contribution 265.45 15.07 4.00 4.00 Total: -1.00 -28.34 265.45 -6.78 -35.12 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -5.59 Total: 4.72 kcal Atomic # 6 Polarization: -5.37 SS G_CDS: -1.05 Total: -6.42 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: 0.89 Total: -52.93 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.34 -6.78 -35.12 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308223755.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.539 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.122 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds