Wall clock time and date at job start Sun Mar 29 2020 21:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46510 * 109.46811 * 2 1 4 4 C 1.36882 * 119.99617 * 266.81481 * 3 2 1 5 5 H 1.08003 * 119.99437 * 188.69762 * 4 3 2 6 6 C 1.39014 * 120.00441 * 8.42464 * 4 3 2 7 7 N 1.31401 * 119.99555 * 26.44400 * 6 4 3 8 8 Si 1.86794 * 120.00355 * 206.44845 * 6 4 3 9 9 H 1.48497 * 109.47423 * 89.99673 * 8 6 4 10 10 H 1.48499 * 109.47238 * 210.00118 * 8 6 4 11 11 H 1.48500 * 109.46765 * 329.99675 * 8 6 4 12 12 C 1.34775 * 119.99995 * 86.82055 * 3 2 1 13 13 O 1.21720 * 119.99527 * 175.83275 * 12 3 2 14 14 C 1.46637 * 120.00093 * 355.82493 * 12 3 2 15 15 C 1.36775 * 126.84991 * 173.52867 * 14 12 3 16 16 N 1.33311 * 107.78019 * 179.90044 * 15 14 12 17 17 C 1.30865 * 109.69758 * 0.37705 * 16 15 14 18 18 N 1.34557 * 109.17665 * 359.76958 * 17 16 15 19 19 H 0.96993 * 126.47581 * 179.97438 * 18 17 16 20 20 H 1.09003 * 109.47423 * 300.00367 * 1 2 3 21 21 H 1.09002 * 109.47269 * 60.00080 * 1 2 3 22 22 H 1.08998 * 109.47206 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47227 * 240.00049 * 2 1 3 24 24 H 1.08996 * 109.47083 * 119.99520 * 2 1 3 25 25 H 0.97000 * 119.99567 * 180.02562 * 7 6 4 26 26 H 1.07997 * 126.11450 * 0.02562 * 15 14 12 27 27 H 1.07999 * 125.41478 * 179.73864 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3084 2.0046 -1.1836 5 1 2.7987 2.9669 -1.1811 6 6 1.9772 1.3964 -2.3890 7 7 0.9786 0.5440 -2.4421 8 14 2.9517 1.7908 -3.9330 9 1 4.0906 0.8457 -4.0546 10 1 2.0708 1.6598 -5.1213 11 1 3.4683 3.1806 -3.8507 12 6 2.1818 2.0383 1.1654 13 8 2.6587 3.1581 1.1709 14 6 1.7851 1.4040 2.4265 15 6 1.9984 1.8847 3.6892 16 7 1.4824 1.0082 4.5510 17 6 0.9640 -0.0001 3.8975 18 7 1.1267 0.1986 2.5767 19 1 0.8368 -0.3927 1.8646 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5137 0.8900 25 1 0.7478 0.1193 -3.2831 26 1 2.4943 2.8099 3.9426 27 1 0.4825 -0.8561 4.3468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308248271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:48 Heat of formation + Delta-G solvation = 59.586235 kcal Electronic energy + Delta-G solvation = -14005.371734 eV Core-core repulsion = 11573.006613 eV Total energy + Delta-G solvation = -2432.365121 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.67059 -38.33296 -35.47661 -32.83651 -31.39912 -29.73637 -29.13520 -25.33000 -22.83872 -21.89701 -21.04677 -19.88772 -17.50367 -16.84969 -15.86887 -14.76706 -14.65684 -14.30208 -13.86552 -13.51322 -13.07557 -12.92638 -12.38235 -12.05860 -11.58922 -11.28565 -11.07141 -10.52061 -10.38642 -10.29062 -9.75625 -9.50292 -9.14857 -8.70161 -8.07980 -7.95606 -6.57294 -3.94975 2.04972 3.08191 3.17027 3.22041 3.43790 3.55771 3.98827 4.21492 4.67723 4.93231 5.02167 5.41611 5.59801 5.79502 6.05198 6.12245 6.20264 6.36558 6.43024 6.88367 7.12059 7.24887 7.57141 7.71178 7.89713 8.28183 8.43578 8.97768 9.18991 9.76983 10.41553 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.054129 B = 0.010551 C = 0.009117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.163363 B = 2653.097858 C = 3070.567966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.106 3.894 3 N -0.431 5.431 4 C -0.306 4.306 5 H 0.111 0.889 6 C 0.032 3.968 7 N -0.862 5.862 8 Si 0.924 3.076 9 H -0.276 1.276 10 H -0.284 1.284 11 H -0.267 1.267 12 C 0.505 3.495 13 O -0.577 6.577 14 C -0.037 4.037 15 C 0.023 3.977 16 N -0.503 5.503 17 C 0.169 3.831 18 N -0.563 5.563 19 H 0.430 0.570 20 H 0.029 0.971 21 H 0.116 0.884 22 H 0.044 0.956 23 H 0.104 0.896 24 H 0.037 0.963 25 H 0.271 0.729 26 H 0.175 0.825 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.791 -5.999 3.278 7.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.018 4.018 3 N -0.148 5.148 4 C -0.433 4.433 5 H 0.129 0.871 6 C -0.172 4.172 7 N -0.501 5.501 8 Si 0.750 3.250 9 H -0.202 1.202 10 H -0.210 1.210 11 H -0.191 1.191 12 C 0.294 3.706 13 O -0.462 6.462 14 C -0.154 4.154 15 C -0.130 4.130 16 N -0.223 5.223 17 C -0.114 4.114 18 N -0.178 5.178 19 H 0.280 0.720 20 H 0.048 0.952 21 H 0.134 0.866 22 H 0.063 0.937 23 H 0.122 0.878 24 H 0.054 0.946 25 H 0.081 0.919 26 H 0.192 0.808 27 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -1.643 -5.482 3.918 6.936 hybrid contribution 0.045 -0.536 -1.919 1.993 sum -1.598 -6.018 1.999 6.539 Atomic orbital electron populations 1.22525 0.96092 1.00667 1.03973 1.21733 0.94856 0.84449 1.00758 1.43735 1.54998 1.10778 1.05287 1.19813 1.36348 1.05703 0.81427 0.87116 1.25280 0.95550 0.96915 0.99449 1.70051 1.22761 1.29675 1.27588 0.85950 0.79605 0.79495 0.79942 1.20227 1.20966 1.19126 1.16608 0.86410 0.86069 0.81554 1.90668 1.50377 1.19278 1.85838 1.21810 1.06294 0.89289 0.98051 1.22419 1.03176 1.00282 0.87081 1.70046 1.15072 1.02952 1.34249 1.24917 1.04759 1.01013 0.80747 1.44912 1.44251 1.18747 1.09887 0.71968 0.95219 0.86569 0.93675 0.87762 0.94561 0.91899 0.80770 0.77983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 8.40 37.16 0.31 -3.01 15 2 C 0.11 2.21 4.81 -4.04 -0.02 2.19 15 3 N -0.43 -10.70 2.62 -116.31 -0.31 -11.01 15 4 C -0.31 -8.14 9.42 -15.01 -0.14 -8.28 15 5 H 0.11 3.14 7.30 -52.48 -0.38 2.75 15 6 C 0.03 0.78 4.85 -17.45 -0.08 0.70 15 7 N -0.86 -20.53 8.41 55.50 0.47 -20.06 15 8 Si 0.92 19.46 29.63 -169.99 -5.04 14.42 15 9 H -0.28 -5.77 7.11 56.52 0.40 -5.37 15 10 H -0.28 -5.89 7.11 56.52 0.40 -5.49 15 11 H -0.27 -5.73 7.11 56.52 0.40 -5.33 15 12 C 0.50 12.74 7.58 -12.87 -0.10 12.64 15 13 O -0.58 -16.34 16.50 5.17 0.09 -16.26 15 14 C -0.04 -0.78 6.52 -82.15 -0.54 -1.32 15 15 C 0.02 0.46 11.67 -17.44 -0.20 0.26 15 16 N -0.50 -9.31 11.20 -14.39 -0.16 -9.47 15 17 C 0.17 2.61 13.01 -90.51 -1.18 1.43 15 18 N -0.56 -9.67 4.27 -10.78 -0.05 -9.72 15 19 H 0.43 6.72 3.67 -40.82 -0.15 6.58 15 20 H 0.03 0.55 6.51 -51.93 -0.34 0.21 15 21 H 0.12 2.60 5.95 -51.93 -0.31 2.29 15 22 H 0.04 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.10 2.30 6.11 -51.93 -0.32 1.99 15 24 H 0.04 0.67 5.12 -51.93 -0.27 0.40 15 25 H 0.27 6.09 8.31 -40.82 -0.34 5.76 15 26 H 0.18 3.34 8.06 -52.49 -0.42 2.92 15 27 H 0.20 2.07 8.06 -52.49 -0.42 1.65 15 LS Contribution 227.42 15.07 3.43 3.43 Total: -1.00 -29.74 227.42 -5.68 -35.42 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -2.17 Total: 8.63 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: -1.95 Total: 4.62 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: -0.05 Total: -50.26 kcal Atomic # 8 Polarization: -16.34 SS G_CDS: 0.09 Total: -16.26 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.04 Total: 14.42 kcal Total LS contribution 3.43 Total: 3.43 kcal Total: -29.74 -5.68 -35.42 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308248271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.009 kcal (2) G-P(sol) polarization free energy of solvation -29.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds