Wall clock time and date at job start Sun Mar 29 2020 21:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46510 * 109.46811 * 2 1 4 4 C 1.36882 * 119.99617 * 266.81481 * 3 2 1 5 5 H 1.08003 * 119.99437 * 188.69762 * 4 3 2 6 6 C 1.39014 * 120.00441 * 8.42464 * 4 3 2 7 7 N 1.31401 * 119.99555 * 26.44400 * 6 4 3 8 8 Si 1.86794 * 120.00355 * 206.44845 * 6 4 3 9 9 H 1.48497 * 109.47423 * 89.99673 * 8 6 4 10 10 H 1.48499 * 109.47238 * 210.00118 * 8 6 4 11 11 H 1.48500 * 109.46765 * 329.99675 * 8 6 4 12 12 C 1.34775 * 119.99995 * 86.82055 * 3 2 1 13 13 O 1.21720 * 119.99527 * 175.83275 * 12 3 2 14 14 C 1.46637 * 120.00093 * 355.82493 * 12 3 2 15 15 C 1.36775 * 126.84991 * 173.52867 * 14 12 3 16 16 N 1.33311 * 107.78019 * 179.90044 * 15 14 12 17 17 C 1.30865 * 109.69758 * 0.37705 * 16 15 14 18 18 N 1.34557 * 109.17665 * 359.76958 * 17 16 15 19 19 H 0.96993 * 126.47581 * 179.97438 * 18 17 16 20 20 H 1.09003 * 109.47423 * 300.00367 * 1 2 3 21 21 H 1.09002 * 109.47269 * 60.00080 * 1 2 3 22 22 H 1.08998 * 109.47206 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47227 * 240.00049 * 2 1 3 24 24 H 1.08996 * 109.47083 * 119.99520 * 2 1 3 25 25 H 0.97000 * 119.99567 * 180.02562 * 7 6 4 26 26 H 1.07997 * 126.11450 * 0.02562 * 15 14 12 27 27 H 1.07999 * 125.41478 * 179.73864 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.3084 2.0046 -1.1836 5 1 2.7987 2.9669 -1.1811 6 6 1.9772 1.3964 -2.3890 7 7 0.9786 0.5440 -2.4421 8 14 2.9517 1.7908 -3.9330 9 1 4.0906 0.8457 -4.0546 10 1 2.0708 1.6598 -5.1213 11 1 3.4683 3.1806 -3.8507 12 6 2.1818 2.0383 1.1654 13 8 2.6587 3.1581 1.1709 14 6 1.7851 1.4040 2.4265 15 6 1.9984 1.8847 3.6892 16 7 1.4824 1.0082 4.5510 17 6 0.9640 -0.0001 3.8975 18 7 1.1267 0.1986 2.5767 19 1 0.8368 -0.3927 1.8646 20 1 -0.3634 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 1.8933 -0.5138 -0.8900 24 1 1.8933 -0.5137 0.8900 25 1 0.7478 0.1193 -3.2831 26 1 2.4943 2.8099 3.9426 27 1 0.4825 -0.8561 4.3468 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308248271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:48 Heat of formation + Delta-G solvation = 40.553512 kcal Electronic energy + Delta-G solvation = -14006.197055 eV Core-core repulsion = 11573.006613 eV Total energy + Delta-G solvation = -2433.190442 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.14430 -40.15070 -37.35331 -34.52935 -33.12386 -31.39088 -30.69125 -27.18886 -24.49426 -23.51906 -22.53312 -21.41047 -19.27468 -18.59477 -17.61794 -16.51867 -16.32142 -16.04536 -15.34495 -15.20396 -14.70685 -14.48209 -14.06086 -13.80859 -13.31746 -12.93321 -12.79981 -12.23031 -12.18989 -11.96429 -11.25787 -11.04721 -10.91187 -10.61409 -9.90564 -9.54847 -8.45274 -5.92849 0.48781 1.39126 1.43427 1.53305 1.98768 2.11331 2.28219 2.41963 2.92115 3.03860 3.69978 3.90890 4.06431 4.35727 4.55457 4.57556 4.60801 4.89177 4.96352 5.20869 5.36205 5.58388 5.86043 5.94608 6.39934 6.45837 6.97471 7.05864 7.30617 7.87926 8.51122 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.054129 B = 0.010551 C = 0.009117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 517.163363 B = 2653.097858 C = 3070.567966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.106 3.894 3 N -0.438 5.438 4 C -0.355 4.355 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.857 5.857 8 Si 0.984 3.016 9 H -0.268 1.268 10 H -0.270 1.270 11 H -0.280 1.280 12 C 0.489 3.511 13 O -0.629 6.629 14 C -0.070 4.070 15 C 0.027 3.973 16 N -0.526 5.526 17 C 0.209 3.791 18 N -0.556 5.556 19 H 0.438 0.562 20 H 0.032 0.968 21 H 0.083 0.917 22 H 0.085 0.915 23 H 0.090 0.910 24 H 0.064 0.936 25 H 0.280 0.720 26 H 0.171 0.829 27 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.848 -8.527 3.605 9.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 N -0.154 5.154 4 C -0.483 4.483 5 H 0.094 0.906 6 C -0.192 4.192 7 N -0.494 5.494 8 Si 0.808 3.192 9 H -0.193 1.193 10 H -0.195 1.195 11 H -0.205 1.205 12 C 0.280 3.720 13 O -0.518 6.518 14 C -0.188 4.188 15 C -0.126 4.126 16 N -0.245 5.245 17 C -0.075 4.075 18 N -0.171 5.171 19 H 0.289 0.711 20 H 0.051 0.949 21 H 0.101 0.899 22 H 0.104 0.896 23 H 0.108 0.892 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.189 0.811 27 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -2.734 -8.065 4.223 9.506 hybrid contribution 0.296 0.156 -1.964 1.993 sum -2.438 -7.909 2.258 8.579 Atomic orbital electron populations 1.22351 0.94508 1.02770 1.02442 1.21876 0.96078 0.82400 1.01382 1.43919 1.54653 1.12102 1.04720 1.19638 1.39306 1.06004 0.83318 0.90574 1.25903 0.95656 0.96542 1.01105 1.70119 1.21869 1.28745 1.28672 0.85079 0.78573 0.78636 0.76920 1.19277 1.19452 1.20484 1.17161 0.86071 0.85887 0.82910 1.90602 1.52731 1.21567 1.86896 1.21195 1.09530 0.91664 0.96386 1.22511 1.02454 1.00475 0.87193 1.70122 1.16473 1.03782 1.34172 1.26143 1.00936 1.00824 0.79557 1.44781 1.43848 1.17476 1.11001 0.71070 0.94912 0.89876 0.89600 0.89182 0.91826 0.91000 0.81142 0.71974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.86 8.40 71.98 0.60 -5.25 15 2 C 0.11 4.29 4.81 86.38 0.42 4.70 15 3 N -0.44 -22.33 2.62 -640.09 -1.68 -24.01 15 4 C -0.36 -19.71 9.42 84.09 0.79 -18.92 15 5 H 0.08 4.64 7.30 -2.91 -0.02 4.62 15 6 C 0.01 0.63 4.85 84.94 0.41 1.04 15 7 N -0.86 -40.13 8.41 21.68 0.18 -39.95 15 8 Si 0.98 39.92 29.63 68.60 2.03 41.95 15 9 H -0.27 -10.47 7.11 99.48 0.71 -9.76 15 10 H -0.27 -10.29 7.11 99.48 0.71 -9.58 15 11 H -0.28 -11.88 7.11 99.48 0.71 -11.18 15 12 C 0.49 25.62 7.58 86.44 0.65 26.28 15 13 O -0.63 -37.89 16.50 -4.41 -0.07 -37.97 15 14 C -0.07 -2.98 6.52 40.00 0.26 -2.72 15 15 C 0.03 1.06 11.67 84.13 0.98 2.04 15 16 N -0.53 -18.00 11.20 -199.43 -2.23 -20.24 15 17 C 0.21 5.50 13.01 180.31 2.35 7.85 15 18 N -0.56 -17.46 4.27 -188.02 -0.80 -18.26 15 19 H 0.44 12.14 3.67 -92.71 -0.34 11.80 15 20 H 0.03 1.14 6.51 -2.39 -0.02 1.13 15 21 H 0.08 3.63 5.95 -2.39 -0.01 3.62 15 22 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 23 H 0.09 3.89 6.11 -2.39 -0.01 3.87 15 24 H 0.06 2.20 5.12 -2.39 -0.01 2.19 15 25 H 0.28 12.10 8.31 -92.71 -0.77 11.33 15 26 H 0.17 6.73 8.06 -2.91 -0.02 6.71 15 27 H 0.26 3.46 8.06 -2.91 -0.02 3.44 15 Total: -1.00 -67.70 227.42 4.76 -62.94 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: 0.87 Total: 20.52 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: 6.47 Total: 15.02 kcal Atomic # 7 Polarization: -97.93 SS G_CDS: -4.53 Total: -102.46 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.07 Total: -37.97 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -67.70 4.76 -62.94 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308248271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.491 kcal (2) G-P(sol) polarization free energy of solvation -67.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds