Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30499 * 125.65228 * 2 1 4 4 C 1.34129 * 109.25449 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.98677 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46738 * 274.97102 * 5 4 3 7 7 C 1.46903 * 111.00372 * 293.95662 * 6 5 4 8 8 C 1.46897 * 110.99806 * 170.00079 * 6 5 4 9 9 C 1.50704 * 109.47244 * 190.00433 * 8 6 5 10 10 H 1.08003 * 119.99858 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00195 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00040 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00211 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46986 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47365 * 119.99626 * 13 11 9 16 16 H 1.48507 * 109.47090 * 239.99786 * 13 11 9 17 17 C 1.34671 * 108.02244 * 359.73194 * 4 3 2 18 18 N 1.35049 * 125.64575 * 179.97438 * 2 1 3 19 19 H 0.97001 * 126.39625 * 0.03039 * 18 2 1 20 20 H 1.09002 * 109.46939 * 270.04438 * 1 2 3 21 21 H 1.08999 * 109.46843 * 30.04102 * 1 2 3 22 22 H 1.08991 * 109.47344 * 150.04095 * 1 2 3 23 23 H 1.08990 * 109.47202 * 34.97006 * 5 4 3 24 24 H 1.08996 * 109.47001 * 154.97717 * 5 4 3 25 25 H 1.09001 * 109.46849 * 60.00040 * 7 6 5 26 26 H 1.09004 * 109.46884 * 179.97438 * 7 6 5 27 27 H 1.09000 * 109.46691 * 300.00048 * 7 6 5 28 28 H 1.08999 * 109.47350 * 310.00174 * 8 6 5 29 29 H 1.09000 * 109.47495 * 70.00370 * 8 6 5 30 30 H 0.97003 * 120.00219 * 180.02562 * 12 11 9 31 31 H 1.07996 * 126.59545 * 180.28631 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6817 0.0006 5 6 4.7481 1.6016 0.0013 6 7 5.0633 1.9957 -1.3783 7 6 5.5128 0.8403 -2.1663 8 6 6.0637 3.0711 -1.4030 9 6 6.1812 3.6159 -2.8032 10 1 5.5737 3.2042 -3.5955 11 6 7.0648 4.6393 -3.0729 12 7 7.8049 5.1403 -2.1081 13 14 7.2109 5.3142 -4.8086 14 1 6.2770 4.5846 -5.7035 15 1 6.8694 6.7593 -4.8082 16 1 8.6029 5.1346 -5.2940 17 6 3.5925 -0.6644 0.0069 18 7 2.2940 -1.0975 0.0005 19 1 1.9950 -2.0202 0.0005 20 1 -0.3633 0.0008 1.0277 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3633 -0.8903 -0.5131 23 1 4.5217 2.4902 0.5903 24 1 5.6040 1.0856 0.4363 25 1 4.7249 0.0875 -2.1893 26 1 5.7391 1.1601 -3.1835 27 1 6.4076 0.4159 -1.7109 28 1 5.7562 3.8691 -0.7273 29 1 7.0288 2.6770 -1.0844 30 1 8.4264 5.8606 -2.2978 31 1 4.4775 -1.2834 0.0133 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308258383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = 58.455601 kcal Electronic energy + Delta-G solvation = -13412.698239 eV Core-core repulsion = 11116.117184 eV Total energy + Delta-G solvation = -2296.581054 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.81819 -36.41710 -32.80304 -32.10222 -31.56876 -28.24458 -26.80419 -25.86818 -23.47141 -20.83436 -20.50364 -19.57026 -17.35814 -16.20066 -15.31596 -14.66024 -14.39023 -13.92366 -13.81030 -13.44337 -13.11477 -12.62991 -12.46573 -11.93381 -11.74063 -11.32170 -10.96650 -10.79281 -10.59672 -10.37360 -9.88623 -9.59518 -9.57836 -9.10658 -8.35983 -8.03593 -7.06700 -5.94140 -3.94521 2.22737 3.26272 3.36940 3.37520 3.44034 3.50038 4.50908 4.56586 5.05823 5.31104 5.34808 5.41377 5.46180 5.51213 5.73594 5.87529 6.16944 6.25121 6.32729 6.39352 6.51083 6.84101 7.02047 7.40639 7.43801 7.56280 7.90777 8.20109 8.33342 8.43338 8.67266 9.13563 9.69085 11.16907 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.055800 B = 0.006364 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.675822 B = 4398.709922 C = 4519.472086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.194 3.806 3 N -0.469 5.469 4 C 0.037 3.963 5 C 0.133 3.867 6 N -0.533 5.533 7 C 0.040 3.960 8 C 0.192 3.808 9 C -0.502 4.502 10 H 0.063 0.937 11 C 0.054 3.946 12 N -0.900 5.900 13 Si 0.897 3.103 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.286 1.286 17 C -0.064 4.064 18 N -0.572 5.572 19 H 0.413 0.587 20 H 0.076 0.924 21 H 0.090 0.910 22 H 0.069 0.931 23 H 0.080 0.920 24 H 0.034 0.966 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.008 0.992 28 H 0.031 0.969 29 H -0.009 1.009 30 H 0.260 0.740 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 -13.618 4.638 17.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.070 4.070 3 N -0.190 5.190 4 C -0.093 4.093 5 C 0.004 3.996 6 N -0.257 5.257 7 C -0.109 4.109 8 C 0.067 3.933 9 C -0.541 4.541 10 H 0.081 0.919 11 C -0.147 4.147 12 N -0.540 5.540 13 Si 0.725 3.275 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.212 1.212 17 C -0.197 4.197 18 N -0.177 5.177 19 H 0.250 0.750 20 H 0.095 0.905 21 H 0.109 0.891 22 H 0.088 0.912 23 H 0.099 0.901 24 H 0.052 0.948 25 H 0.061 0.939 26 H 0.090 0.910 27 H 0.027 0.973 28 H 0.050 0.950 29 H 0.009 0.991 30 H 0.069 0.931 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -10.950 -12.424 4.450 17.147 hybrid contribution 1.175 -1.228 -0.555 1.788 sum -9.775 -13.652 3.894 17.236 Atomic orbital electron populations 1.20119 0.85219 1.03831 1.03108 1.23316 0.95546 0.81841 1.06278 1.70173 1.01989 1.28148 1.18661 1.20774 0.92916 0.91302 1.04329 1.20280 0.90542 0.96363 0.92418 1.62016 1.45990 1.09062 1.08637 1.22202 0.96344 0.92694 0.99660 1.19754 0.87335 0.88168 0.98010 1.21216 1.20956 1.17479 0.94427 0.91867 1.24983 0.95760 0.96685 0.97279 1.69973 1.25320 1.26925 1.31809 0.86451 0.77593 0.78828 0.84602 1.19714 1.21017 1.21203 1.22474 0.86793 0.96657 1.13824 1.43149 1.06776 1.09530 1.58237 0.75023 0.90534 0.89143 0.91248 0.90138 0.94793 0.93866 0.90973 0.97339 0.95045 0.99138 0.93072 0.81134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.59 10.51 36.01 0.38 -0.22 16 2 C 0.19 2.72 8.15 -155.41 -1.27 1.45 16 3 N -0.47 -8.77 11.25 -7.07 -0.08 -8.85 16 4 C 0.04 0.67 5.83 -82.85 -0.48 0.19 16 5 C 0.13 2.70 5.50 -4.97 -0.03 2.67 16 6 N -0.53 -12.57 4.74 -245.83 -1.17 -13.74 16 7 C 0.04 0.83 9.13 60.07 0.55 1.38 16 8 C 0.19 5.28 4.72 -4.98 -0.02 5.26 16 9 C -0.50 -14.74 8.46 -34.44 -0.29 -15.03 16 10 H 0.06 1.85 7.12 -52.48 -0.37 1.48 16 11 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 12 N -0.90 -27.49 13.29 55.43 0.74 -26.75 16 13 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 14 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 17 C -0.06 -0.92 10.93 -16.56 -0.18 -1.10 16 18 N -0.57 -6.73 6.15 -10.23 -0.06 -6.80 16 19 H 0.41 3.08 8.96 -40.82 -0.37 2.72 16 20 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 21 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 22 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 23 H 0.08 1.70 7.93 -51.93 -0.41 1.29 16 24 H 0.03 0.63 8.12 -51.93 -0.42 0.21 16 25 H 0.04 0.81 6.56 -51.93 -0.34 0.47 16 26 H 0.07 1.61 6.76 -51.93 -0.35 1.26 16 27 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.03 0.92 7.93 -51.93 -0.41 0.51 16 29 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.17 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 265.43 15.07 4.00 4.00 Total: -1.00 -34.50 265.43 -7.38 -41.88 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: -4.35 Total: -3.10 kcal Atomic # 6 Polarization: -2.48 SS G_CDS: -1.44 Total: -3.92 kcal Atomic # 7 Polarization: -55.56 SS G_CDS: -0.57 Total: -56.14 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -34.50 -7.38 -41.88 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308258383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.337 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.882 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds