Wall clock time and date at job start Sun Mar 29 2020 21:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30499 * 125.65228 * 2 1 4 4 C 1.34129 * 109.25449 * 179.97438 * 3 2 1 5 5 C 1.50702 * 125.98677 * 180.02562 * 4 3 2 6 6 N 1.46900 * 109.46738 * 274.97102 * 5 4 3 7 7 C 1.46903 * 111.00372 * 293.95662 * 6 5 4 8 8 C 1.46897 * 110.99806 * 170.00079 * 6 5 4 9 9 C 1.50704 * 109.47244 * 190.00433 * 8 6 5 10 10 H 1.08003 * 119.99858 * 359.97438 * 9 8 6 11 11 C 1.37873 * 120.00195 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00040 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00211 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46986 * 359.97438 * 13 11 9 15 15 H 1.48492 * 109.47365 * 119.99626 * 13 11 9 16 16 H 1.48507 * 109.47090 * 239.99786 * 13 11 9 17 17 C 1.34671 * 108.02244 * 359.73194 * 4 3 2 18 18 N 1.35049 * 125.64575 * 179.97438 * 2 1 3 19 19 H 0.97001 * 126.39625 * 0.03039 * 18 2 1 20 20 H 1.09002 * 109.46939 * 270.04438 * 1 2 3 21 21 H 1.08999 * 109.46843 * 30.04102 * 1 2 3 22 22 H 1.08991 * 109.47344 * 150.04095 * 1 2 3 23 23 H 1.08990 * 109.47202 * 34.97006 * 5 4 3 24 24 H 1.08996 * 109.47001 * 154.97717 * 5 4 3 25 25 H 1.09001 * 109.46849 * 60.00040 * 7 6 5 26 26 H 1.09004 * 109.46884 * 179.97438 * 7 6 5 27 27 H 1.09000 * 109.46691 * 300.00048 * 7 6 5 28 28 H 1.08999 * 109.47350 * 310.00174 * 8 6 5 29 29 H 1.09000 * 109.47495 * 70.00370 * 8 6 5 30 30 H 0.97003 * 120.00219 * 180.02562 * 12 11 9 31 31 H 1.07996 * 126.59545 * 180.28631 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5544 0.6817 0.0006 5 6 4.7481 1.6016 0.0013 6 7 5.0633 1.9957 -1.3783 7 6 5.5128 0.8403 -2.1663 8 6 6.0637 3.0711 -1.4030 9 6 6.1812 3.6159 -2.8032 10 1 5.5737 3.2042 -3.5955 11 6 7.0648 4.6393 -3.0729 12 7 7.8049 5.1403 -2.1081 13 14 7.2109 5.3142 -4.8086 14 1 6.2770 4.5846 -5.7035 15 1 6.8694 6.7593 -4.8082 16 1 8.6029 5.1346 -5.2940 17 6 3.5925 -0.6644 0.0069 18 7 2.2940 -1.0975 0.0005 19 1 1.9950 -2.0202 0.0005 20 1 -0.3633 0.0008 1.0277 21 1 -0.3633 0.8896 -0.5145 22 1 -0.3633 -0.8903 -0.5131 23 1 4.5217 2.4902 0.5903 24 1 5.6040 1.0856 0.4363 25 1 4.7249 0.0875 -2.1893 26 1 5.7391 1.1601 -3.1835 27 1 6.4076 0.4159 -1.7109 28 1 5.7562 3.8691 -0.7273 29 1 7.0288 2.6770 -1.0844 30 1 8.4264 5.8606 -2.2978 31 1 4.4775 -1.2834 0.0133 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308258383.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:44 Heat of formation + Delta-G solvation = 32.699281 kcal Electronic energy + Delta-G solvation = -13413.815116 eV Core-core repulsion = 11116.117184 eV Total energy + Delta-G solvation = -2297.697932 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.94831 -38.23145 -34.80630 -33.47077 -32.64530 -29.85122 -28.63496 -27.29164 -25.29665 -22.49365 -21.76875 -20.90979 -18.63549 -18.25811 -16.87020 -16.37847 -15.94636 -15.49284 -15.32168 -14.94028 -14.37312 -13.92453 -13.47697 -13.40046 -13.27643 -13.05582 -12.82427 -12.59720 -12.54601 -12.26989 -11.89070 -11.32653 -10.83556 -10.79278 -10.61117 -9.23241 -8.90912 -8.18923 -6.29399 1.13813 1.40889 1.42492 1.56210 2.12109 2.32998 2.42762 3.12840 3.51604 3.59070 4.16025 4.23993 4.45601 4.51563 4.57728 4.70429 4.76585 4.80994 4.99994 5.08467 5.14618 5.17647 5.21789 5.31345 5.65568 5.79162 6.06804 6.38194 6.65022 6.68981 6.86756 7.29541 7.40068 8.92359 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.055800 B = 0.006364 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.675822 B = 4398.709922 C = 4519.472086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.199 3.801 3 N -0.529 5.529 4 C -0.009 4.009 5 C 0.138 3.862 6 N -0.548 5.548 7 C 0.048 3.952 8 C 0.208 3.792 9 C -0.523 4.523 10 H 0.059 0.941 11 C 0.001 3.999 12 N -0.935 5.935 13 Si 0.972 3.028 14 H -0.266 1.266 15 H -0.278 1.278 16 H -0.274 1.274 17 C -0.040 4.040 18 N -0.553 5.553 19 H 0.437 0.563 20 H 0.094 0.906 21 H 0.080 0.920 22 H 0.103 0.897 23 H 0.055 0.945 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.053 0.947 27 H 0.019 0.981 28 H -0.001 1.001 29 H -0.031 1.031 30 H 0.265 0.735 31 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.498 -15.637 3.749 19.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.066 4.066 3 N -0.251 5.251 4 C -0.137 4.137 5 C 0.010 3.990 6 N -0.273 5.273 7 C -0.100 4.100 8 C 0.082 3.918 9 C -0.561 4.561 10 H 0.077 0.923 11 C -0.197 4.197 12 N -0.575 5.575 13 Si 0.797 3.203 14 H -0.190 1.190 15 H -0.203 1.203 16 H -0.200 1.200 17 C -0.175 4.175 18 N -0.159 5.159 19 H 0.279 0.721 20 H 0.113 0.887 21 H 0.099 0.901 22 H 0.122 0.878 23 H 0.073 0.927 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.072 0.928 27 H 0.037 0.963 28 H 0.017 0.983 29 H -0.014 1.014 30 H 0.074 0.926 31 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -12.052 -14.494 3.571 19.185 hybrid contribution 1.442 -0.663 -0.199 1.600 sum -10.610 -15.156 3.372 18.806 Atomic orbital electron populations 1.20316 0.82037 1.05048 1.04680 1.24039 0.97161 0.81356 1.04080 1.70066 1.02791 1.31058 1.21168 1.20489 0.92238 0.92568 1.08456 1.20149 0.92453 0.96264 0.90179 1.61919 1.44520 1.09609 1.11212 1.22128 0.97637 0.92125 0.98107 1.19393 0.87166 0.88683 0.96578 1.21473 1.21388 1.18229 0.95022 0.92263 1.25933 0.95060 0.96729 1.01971 1.70096 1.25818 1.27398 1.34237 0.85291 0.78085 0.78058 0.78895 1.18968 1.20341 1.19978 1.22729 0.88547 0.95379 1.10872 1.43076 1.05597 1.10518 1.56677 0.72137 0.88700 0.90101 0.87822 0.92651 0.93427 0.91306 0.92843 0.96273 0.98269 1.01351 0.92614 0.78199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.97 10.51 71.24 0.75 -0.23 16 2 C 0.20 5.13 8.15 138.13 1.13 6.25 16 3 N -0.53 -19.64 11.25 -176.28 -1.98 -21.63 16 4 C -0.01 -0.32 5.83 41.39 0.24 -0.08 16 5 C 0.14 5.77 5.50 85.56 0.47 6.24 16 6 N -0.55 -26.54 4.74 -931.65 -4.42 -30.96 16 7 C 0.05 2.00 9.13 127.69 1.17 3.17 16 8 C 0.21 11.94 4.72 85.56 0.40 12.34 16 9 C -0.52 -31.44 8.46 25.60 0.22 -31.23 16 10 H 0.06 3.53 7.12 -2.91 -0.02 3.51 16 11 C 0.00 0.05 5.46 84.65 0.46 0.51 16 12 N -0.93 -58.20 13.29 21.45 0.28 -57.92 16 13 Si 0.97 45.97 29.54 68.60 2.03 47.99 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 C -0.04 -1.04 10.93 83.09 0.91 -0.13 16 18 N -0.55 -11.10 6.15 -186.27 -1.15 -12.25 16 19 H 0.44 4.55 8.96 -92.71 -0.83 3.72 16 20 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 21 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 23 H 0.05 2.50 7.93 -2.39 -0.02 2.48 16 24 H 0.05 1.80 8.12 -2.39 -0.02 1.78 16 25 H 0.07 2.47 6.56 -2.39 -0.02 2.45 16 26 H 0.05 2.39 6.76 -2.39 -0.02 2.37 16 27 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.00 -0.05 7.93 -2.39 -0.02 -0.07 16 29 H -0.03 -1.88 8.12 -2.39 -0.02 -1.90 16 30 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 31 H 0.20 3.88 8.06 -2.91 -0.02 3.85 16 Total: -1.00 -76.95 265.43 0.79 -76.16 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 0.29 Total: 1.76 kcal Atomic # 6 Polarization: -8.89 SS G_CDS: 5.74 Total: -3.15 kcal Atomic # 7 Polarization: -115.49 SS G_CDS: -7.26 Total: -122.76 kcal Atomic # 14 Polarization: 45.97 SS G_CDS: 2.03 Total: 47.99 kcal Total: -76.95 0.79 -76.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308258383.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.856 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.699 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds