Wall clock time and date at job start Sun Mar 29 2020 21:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.41376 * 126.58081 * 2 1 4 4 C 1.34511 * 106.84221 * 179.97438 * 3 2 1 5 5 O 1.34299 * 108.41821 * 359.73792 * 4 3 2 6 6 C 1.34302 * 109.47987 * 0.43836 * 5 4 3 7 7 C 1.50697 * 125.79289 * 179.82547 * 6 5 4 8 8 N 1.46905 * 109.47066 * 269.69021 * 7 6 5 9 9 C 1.46901 * 110.99870 * 180.02562 * 8 7 6 10 10 C 1.53004 * 109.46916 * 180.02562 * 9 8 7 11 11 C 1.50703 * 109.46807 * 179.97438 * 10 9 8 12 12 H 1.07995 * 120.00107 * 359.97438 * 11 10 9 13 13 C 1.37878 * 119.99714 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99944 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99765 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.47110 * 90.00207 * 15 13 11 17 17 H 1.48501 * 109.47137 * 210.00199 * 15 13 11 18 18 H 1.48496 * 109.47323 * 330.00240 * 15 13 11 19 19 H 1.08997 * 109.47016 * 270.03795 * 1 2 3 20 20 H 1.08998 * 109.46621 * 30.04232 * 1 2 3 21 21 H 1.09002 * 109.46883 * 150.03881 * 1 2 3 22 22 H 1.08001 * 126.57814 * 359.97438 * 3 2 1 23 23 H 1.08001 * 125.78616 * 180.02562 * 4 3 2 24 24 H 1.09001 * 109.47558 * 149.69185 * 7 6 5 25 25 H 1.08998 * 109.47216 * 29.68847 * 7 6 5 26 26 H 1.00901 * 110.99869 * 56.04737 * 8 7 6 27 27 H 1.09004 * 109.47031 * 299.99620 * 9 8 7 28 28 H 1.08995 * 109.47111 * 59.99900 * 9 8 7 29 29 H 1.08995 * 109.46615 * 299.99641 * 10 9 8 30 30 H 1.08996 * 109.46939 * 60.00272 * 10 9 8 31 31 H 0.97007 * 120.00038 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3496 1.1353 0.0000 4 6 3.6157 0.6810 0.0006 5 8 3.5848 -0.6616 0.0068 6 6 2.3087 -1.0802 0.0005 7 6 1.8522 -2.5164 0.0006 8 7 1.7044 -2.9834 -1.3844 9 6 1.2590 -4.3827 -1.4234 10 6 1.1174 -4.8324 -2.8790 11 6 0.6611 -6.2681 -2.9190 12 1 0.4897 -6.8061 -1.9984 13 6 0.4625 -6.8948 -4.1310 14 7 0.6717 -6.2397 -5.2520 15 14 -0.1025 -8.6746 -4.1806 16 1 -1.5866 -8.7227 -4.1941 17 1 0.4251 -9.3274 -5.4056 18 1 0.4050 -9.3887 -2.9815 19 1 -0.3633 0.0007 1.0276 20 1 -0.3632 0.8896 -0.5145 21 1 -0.3633 -0.8904 -0.5132 22 1 2.0367 2.1690 -0.0004 23 1 4.5060 1.2923 0.0011 24 1 0.8938 -2.5931 0.5141 25 1 2.5901 -3.1321 0.5148 26 1 2.5630 -2.8623 -1.9003 27 1 1.9925 -5.0117 -0.9189 28 1 0.2964 -4.4718 -0.9199 29 1 0.3841 -4.2035 -3.3837 30 1 2.0802 -4.7434 -3.3820 31 1 0.5323 -6.6807 -6.1047 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308273888.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:06 Heat of formation + Delta-G solvation = -22.030790 kcal Electronic energy + Delta-G solvation = -13080.459158 eV Core-core repulsion = 10748.095201 eV Total energy + Delta-G solvation = -2332.363957 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.47648 -37.68576 -35.31820 -34.78186 -32.44472 -30.56466 -28.56091 -26.51951 -24.76805 -22.50212 -22.28154 -20.58143 -18.52550 -17.90070 -17.11580 -16.78564 -16.45739 -15.62696 -15.31959 -14.84465 -14.16321 -13.95410 -13.88938 -13.67749 -13.48309 -13.22253 -12.92037 -12.82839 -12.48317 -12.30770 -11.93050 -11.44439 -11.30475 -10.56367 -10.48683 -9.48562 -9.20918 -8.19856 -6.31769 0.78939 1.41756 1.43493 1.54436 1.69165 2.13716 2.41725 3.13889 3.43948 3.79646 4.02951 4.09885 4.32208 4.45189 4.57835 4.60343 4.69759 4.84833 4.93060 4.99919 5.04986 5.26629 5.34213 5.43611 5.64996 5.71291 5.76314 6.07054 6.18490 6.27427 6.40076 6.85549 7.37829 8.92495 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.065309 B = 0.005182 C = 0.005115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 428.627988 B = 5402.319940 C = 5473.187998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.170 4.170 3 C -0.227 4.227 4 C -0.039 4.039 5 O -0.197 6.197 6 C -0.040 4.040 7 C 0.144 3.856 8 N -0.692 5.692 9 C 0.084 3.916 10 C 0.031 3.969 11 C -0.544 4.544 12 H 0.064 0.936 13 C 0.000 4.000 14 N -0.933 5.933 15 Si 0.969 3.031 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.262 1.262 19 H 0.078 0.922 20 H 0.074 0.926 21 H 0.059 0.941 22 H 0.169 0.831 23 H 0.239 0.761 24 H 0.108 0.892 25 H 0.047 0.953 26 H 0.337 0.663 27 H 0.024 0.976 28 H 0.068 0.932 29 H -0.005 1.005 30 H -0.011 1.011 31 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.007 12.461 12.102 17.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.173 4.173 3 C -0.246 4.246 4 C -0.106 4.106 5 O -0.093 6.093 6 C -0.090 4.090 7 C 0.016 3.984 8 N -0.323 5.323 9 C -0.045 4.045 10 C -0.007 4.007 11 C -0.583 4.583 12 H 0.082 0.918 13 C -0.198 4.198 14 N -0.573 5.573 15 Si 0.793 3.207 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.186 1.186 19 H 0.097 0.903 20 H 0.093 0.907 21 H 0.078 0.922 22 H 0.187 0.813 23 H 0.255 0.745 24 H 0.126 0.874 25 H 0.065 0.935 26 H 0.155 0.845 27 H 0.042 0.958 28 H 0.086 0.914 29 H 0.013 0.987 30 H 0.007 0.993 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.603 12.488 11.872 17.426 hybrid contribution 0.569 -1.029 -0.277 1.208 sum 3.172 11.459 11.595 16.608 Atomic orbital electron populations 1.20223 0.88327 1.02920 1.02539 1.20607 0.98167 0.92273 1.06226 1.22069 0.92698 1.00495 1.09324 1.24777 1.01132 0.79934 1.04773 1.83987 1.29192 1.24230 1.71938 1.22242 0.81063 0.96739 1.08910 1.20304 1.01007 0.86481 0.90657 1.60581 1.37476 1.21743 1.12518 1.21838 0.98977 0.85624 0.98012 1.18927 0.95035 0.94845 0.91868 1.21615 1.45628 0.98148 0.92883 0.91818 1.25996 0.95430 1.03154 0.95208 1.70118 1.50157 1.38991 0.98077 0.85392 0.78651 0.78786 0.77867 1.19674 1.20825 1.18597 0.90305 0.90701 0.92234 0.81315 0.74491 0.87380 0.93526 0.84546 0.95770 0.91359 0.98668 0.99266 0.92747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 9.99 71.24 0.71 -1.24 16 2 C -0.17 -4.60 6.16 -19.94 -0.12 -4.72 16 3 C -0.23 -5.09 10.87 22.19 0.24 -4.85 16 4 C -0.04 -0.84 12.09 66.97 0.81 -0.03 16 5 O -0.20 -5.60 10.65 -2.44 -0.03 -5.63 16 6 C -0.04 -1.19 6.83 24.83 0.17 -1.02 16 7 C 0.14 4.34 5.84 85.55 0.50 4.84 16 8 N -0.69 -25.66 6.49 -517.92 -3.36 -29.02 16 9 C 0.08 3.53 5.62 86.30 0.49 4.02 16 10 C 0.03 1.66 5.23 29.85 0.16 1.82 16 11 C -0.54 -31.21 9.11 25.60 0.23 -30.98 16 12 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 13 C 0.00 0.00 5.46 84.66 0.46 0.46 16 14 N -0.93 -57.63 13.29 21.45 0.28 -57.34 16 15 Si 0.97 44.35 29.54 68.60 2.03 46.37 16 16 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 17 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 18 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 19 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 20 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 21 H 0.06 1.59 7.78 -2.39 -0.02 1.57 16 22 H 0.17 2.81 8.06 -2.91 -0.02 2.78 16 23 H 0.24 2.76 8.06 -2.91 -0.02 2.74 16 24 H 0.11 2.97 7.76 -2.39 -0.02 2.95 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.34 12.77 8.72 -89.69 -0.78 11.98 16 27 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 28 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 29 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.26 15.25 8.31 -92.70 -0.77 14.48 16 Total: -1.00 -67.07 271.92 2.89 -64.17 By element: Atomic # 1 Polarization: 12.82 SS G_CDS: 0.33 Total: 13.14 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.65 Total: -31.70 kcal Atomic # 7 Polarization: -83.29 SS G_CDS: -3.08 Total: -86.36 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.03 Total: -5.63 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.37 kcal Total: -67.07 2.89 -64.17 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308273888.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.140 kcal (2) G-P(sol) polarization free energy of solvation -67.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds