Wall clock time and date at job start Sun Mar 29 2020 21:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46499 * 109.46943 * 23.25289 * 3 2 1 5 5 C 1.36943 * 119.99794 * 263.92149 * 4 3 2 6 6 H 1.08001 * 119.99850 * 199.39206 * 5 4 3 7 7 C 1.38809 * 120.00226 * 19.39430 * 5 4 3 8 8 N 1.31618 * 119.99775 * 22.27885 * 7 5 4 9 9 Si 1.86799 * 120.00155 * 202.27696 * 7 5 4 10 10 H 1.48499 * 109.46957 * 59.99782 * 9 7 5 11 11 H 1.48503 * 109.47194 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47041 * 299.99781 * 9 7 5 13 13 C 1.46498 * 120.00092 * 83.92677 * 4 3 2 14 14 C 1.53004 * 109.47101 * 89.99939 * 13 4 3 15 15 H 1.08990 * 110.27681 * 59.29553 * 14 13 4 16 16 C 1.54947 * 110.30626 * 181.39437 * 14 13 4 17 17 C 1.55416 * 100.89080 * 155.28782 * 16 14 13 18 18 C 1.54380 * 102.30978 * 325.98466 * 17 16 14 19 19 O 1.43235 * 107.58809 * 21.28734 * 18 17 16 20 20 H 4.40634 * 5.51323 * 180.02562 * 4 1 2 21 21 H 1.09000 * 109.47412 * 143.25644 * 3 2 1 22 22 H 1.09007 * 109.46685 * 263.25474 * 3 2 1 23 23 H 0.97003 * 120.00250 * 180.02562 * 8 7 5 24 24 H 1.09001 * 109.46969 * 209.99691 * 13 4 3 25 25 H 1.08996 * 109.46851 * 329.99578 * 13 4 3 26 26 H 1.09001 * 111.12105 * 273.27426 * 16 14 13 27 27 H 1.08994 * 111.12953 * 37.43587 * 16 14 13 28 28 H 1.09003 * 110.87835 * 207.74961 * 17 16 14 29 29 H 1.08997 * 110.94040 * 84.24861 * 17 16 14 30 30 H 1.08997 * 109.83046 * 261.77780 * 18 17 16 31 31 H 1.09003 * 109.90607 * 140.84316 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2681 -0.5453 5 6 3.4820 -2.2882 0.2999 6 1 4.1208 -3.0857 -0.0499 7 6 3.0127 -2.2973 1.6062 8 7 1.9279 -1.6215 1.9205 9 14 3.9208 -3.2687 2.9182 10 1 5.3099 -2.7580 3.0395 11 1 3.2215 -3.1168 4.2195 12 1 3.9523 -4.7039 2.5384 13 6 3.2526 -1.4457 -1.9947 14 6 4.6457 -1.0073 -2.4508 15 1 5.4112 -1.5967 -1.9462 16 6 4.7795 -1.1542 -3.9875 17 6 5.8940 -0.1131 -4.2861 18 6 5.6062 0.9861 -3.2410 19 8 4.8393 0.3915 -2.1874 20 1 -1.0497 -0.0002 -0.0003 21 1 3.0091 0.8243 -0.6148 22 1 3.0093 0.1215 1.0206 23 1 1.6001 -1.6274 2.8334 24 1 3.1018 -2.4957 -2.2456 25 1 2.4984 -0.8401 -2.4973 26 1 5.0970 -2.1608 -4.2596 27 1 3.8495 -0.8883 -4.4900 28 1 5.7978 0.2794 -5.2984 29 1 6.8826 -0.5456 -4.1319 30 1 5.0377 1.7942 -3.7013 31 1 6.5437 1.3740 -2.8425 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308273912.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:35 Heat of formation + Delta-G solvation = 13.834575 kcal Electronic energy + Delta-G solvation = -13966.024276 eV Core-core repulsion = 11635.215557 eV Total energy + Delta-G solvation = -2330.808718 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.23862 -37.62968 -33.56164 -33.40075 -32.82184 -30.65312 -27.94798 -26.80700 -23.73750 -22.32251 -21.73308 -19.31958 -18.16291 -17.58115 -16.91799 -16.62270 -15.73281 -15.43137 -15.22586 -14.71096 -14.12498 -13.67748 -13.35414 -13.25982 -12.73843 -12.59774 -12.46524 -12.27003 -12.15420 -11.94796 -11.86998 -11.57878 -10.79069 -10.65048 -10.34131 -10.27310 -8.84743 -7.80431 -5.23610 1.46908 1.50787 1.56811 2.33291 2.53456 2.60417 3.09793 3.29412 3.72688 3.80171 4.09595 4.12301 4.18559 4.35527 4.47641 4.65930 4.84960 4.87078 4.94994 4.99405 5.05095 5.14234 5.21220 5.31158 5.41317 5.64814 5.68489 6.31069 6.39046 7.12180 7.36215 7.85788 8.32076 9.20627 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031247 B = 0.010539 C = 0.008722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.861290 B = 2656.082451 C = 3209.631206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 C -0.134 4.134 3 C 0.280 3.720 4 N -0.596 5.596 5 C -0.272 4.272 6 H 0.074 0.926 7 C -0.048 4.048 8 N -0.913 5.913 9 Si 0.961 3.039 10 H -0.281 1.281 11 H -0.298 1.298 12 H -0.276 1.276 13 C 0.149 3.851 14 C 0.066 3.934 15 H 0.049 0.951 16 C -0.144 4.144 17 C -0.143 4.143 18 C 0.037 3.963 19 O -0.401 6.401 20 H 0.224 0.776 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.246 0.754 24 H 0.062 0.938 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.071 0.929 31 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.031 2.786 -11.560 13.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 C -0.137 4.137 3 C 0.154 3.846 4 N -0.316 5.316 5 C -0.402 4.402 6 H 0.092 0.908 7 C -0.244 4.244 8 N -0.558 5.558 9 Si 0.790 3.210 10 H -0.208 1.208 11 H -0.224 1.224 12 H -0.202 1.202 13 C 0.023 3.977 14 C 0.007 3.993 15 H 0.067 0.933 16 C -0.182 4.182 17 C -0.181 4.181 18 C -0.040 4.040 19 O -0.321 6.321 20 H 0.241 0.759 21 H 0.077 0.923 22 H 0.074 0.926 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.060 0.940 26 H 0.114 0.886 27 H 0.100 0.900 28 H 0.120 0.880 29 H 0.099 0.901 30 H 0.089 0.911 31 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.908 2.880 -11.231 13.013 hybrid contribution 0.034 -0.627 1.014 1.193 sum 5.942 2.253 -10.217 12.032 Atomic orbital electron populations 1.24997 0.96312 1.04436 1.05603 1.24790 0.96248 0.96610 0.96042 1.17505 0.82594 0.87059 0.97436 1.44061 1.75013 1.11303 1.01238 1.19432 1.23764 1.03933 0.93080 0.90827 1.25627 0.96903 1.01313 1.00588 1.70300 1.20697 1.46830 1.17943 0.85436 0.78305 0.78665 0.78594 1.20780 1.22398 1.20210 1.21092 0.93930 0.98928 0.83732 1.23689 0.98240 0.82142 0.95248 0.93282 1.23273 0.99984 1.01152 0.93759 1.23084 0.99267 0.95440 1.00302 1.23310 0.95597 0.96679 0.88379 1.88483 1.74376 1.22853 1.46389 0.75913 0.92299 0.92557 0.94448 0.91991 0.93954 0.88650 0.90032 0.87955 0.90072 0.91056 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -13.96 19.25 74.32 1.43 -12.53 16 2 C -0.13 -6.99 11.50 31.13 0.36 -6.63 16 3 C 0.28 14.58 5.25 84.57 0.44 15.02 16 4 N -0.60 -30.81 2.44 -712.54 -1.74 -32.55 16 5 C -0.27 -15.15 9.63 84.03 0.81 -14.35 16 6 H 0.07 3.95 7.92 -2.91 -0.02 3.92 16 7 C -0.05 -2.72 4.82 84.86 0.41 -2.31 16 8 N -0.91 -54.55 9.61 21.65 0.21 -54.34 16 9 Si 0.96 45.74 29.61 68.60 2.03 47.77 16 10 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 11 H -0.30 -14.32 7.11 99.48 0.71 -13.62 16 12 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 13 C 0.15 6.26 5.42 86.38 0.47 6.73 16 14 C 0.07 2.34 3.70 31.26 0.12 2.46 16 15 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 16 C -0.14 -3.51 6.58 32.09 0.21 -3.30 16 17 C -0.14 -2.92 7.02 31.89 0.22 -2.70 16 18 C 0.04 0.96 7.80 72.45 0.56 1.53 16 19 O -0.40 -14.96 9.77 -148.98 -1.46 -16.42 16 20 H 0.22 8.50 7.80 -4.43 -0.03 8.47 16 21 H 0.06 2.86 7.05 -2.39 -0.02 2.85 16 22 H 0.06 3.24 6.59 -2.38 -0.02 3.23 16 23 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 24 H 0.06 2.52 8.04 -2.39 -0.02 2.50 16 25 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 26 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.08 1.91 8.06 -2.39 -0.02 1.89 16 28 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 30 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -66.36 264.40 5.16 -61.20 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: 1.09 Total: 10.43 kcal Atomic # 6 Polarization: -21.11 SS G_CDS: 5.03 Total: -16.08 kcal Atomic # 7 Polarization: -85.36 SS G_CDS: -1.53 Total: -86.90 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -1.46 Total: -16.42 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -66.36 5.16 -61.20 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308273912.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.035 kcal (2) G-P(sol) polarization free energy of solvation -66.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds