Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47141 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47494 * 119.99680 * 11 9 7 14 14 H 1.48505 * 109.47047 * 239.99860 * 11 9 7 15 15 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 16 16 N 1.30495 * 125.65156 * 95.02563 * 15 2 1 17 17 C 1.34133 * 109.25767 * 179.97438 * 16 15 2 18 18 C 1.34667 * 108.02093 * 359.97438 * 17 16 15 19 19 N 1.35051 * 125.64785 * 274.71459 * 15 2 1 20 20 H 0.96996 * 126.39826 * 0.02562 * 19 15 2 21 21 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 22 22 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 23 23 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 24 24 H 1.00898 * 110.99743 * 321.04650 * 4 2 1 25 25 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 26 26 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 27 27 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 28 28 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 29 29 H 0.96992 * 120.00032 * 180.02562 * 10 9 7 30 30 H 1.07997 * 125.99031 * 180.02562 * 17 16 15 31 31 H 1.07995 * 126.59274 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 6 2.6611 0.4065 -4.7512 8 1 2.3651 1.4387 -4.6354 9 6 3.0973 -0.0523 -5.9760 10 7 3.4573 -1.3094 -6.1171 11 14 3.1785 1.1117 -7.4346 12 1 2.7230 2.4619 -7.0164 13 1 4.5771 1.1913 -7.9273 14 1 2.2993 0.6074 -8.5200 15 6 2.0324 -0.7105 1.2303 16 7 2.3735 -1.9683 1.2962 17 6 2.7717 -2.2539 2.5449 18 6 2.6742 -1.1301 3.2805 19 7 2.2097 -0.1495 2.4459 20 1 2.0382 0.7751 2.6837 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.4496 -1.4977 -1.4102 25 1 2.7588 1.0465 -2.1182 26 1 1.0870 0.6166 -2.5526 27 1 3.5916 -0.9259 -3.3684 28 1 1.9201 -1.3564 -3.8032 29 1 3.7646 -1.6321 -6.9786 30 1 3.1118 -3.2161 2.8981 31 1 2.9183 -1.0225 4.3270 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308281381.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = 48.034089 kcal Electronic energy + Delta-G solvation = -13202.640065 eV Core-core repulsion = 10905.607099 eV Total energy + Delta-G solvation = -2297.032965 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.86334 -36.69925 -33.28539 -32.34129 -31.23638 -28.62243 -27.75477 -24.30711 -22.81464 -21.44523 -20.53160 -20.00088 -17.77938 -16.27937 -15.27752 -14.63727 -14.58153 -14.29976 -14.15190 -13.52918 -13.40174 -12.60132 -12.48931 -12.19513 -11.75224 -11.24560 -11.01918 -10.91262 -10.51256 -10.00414 -9.86165 -9.73209 -9.38234 -9.09453 -8.32323 -8.27095 -7.74719 -5.95425 -3.98236 2.16153 3.14878 3.33666 3.36325 3.40892 3.44483 4.46639 4.60835 4.76617 5.10406 5.21876 5.24909 5.40373 5.47671 5.62016 5.77193 5.87680 6.11683 6.23528 6.35206 6.42785 6.89005 7.00508 7.37485 7.56206 7.78670 7.87804 8.01303 8.15108 8.35760 8.47396 9.09557 9.65281 11.16034 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064317 B = 0.005532 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.240408 B = 5060.651979 C = 5259.600223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.167 3.833 3 H 0.087 0.913 4 N -0.670 5.670 5 C 0.067 3.933 6 C 0.025 3.975 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.892 5.892 11 Si 0.892 3.108 12 H -0.274 1.274 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.230 3.770 16 N -0.466 5.466 17 C -0.030 4.030 18 C -0.071 4.071 19 N -0.572 5.572 20 H 0.414 0.586 21 H 0.053 0.947 22 H 0.069 0.931 23 H 0.064 0.936 24 H 0.348 0.652 25 H 0.057 0.943 26 H 0.017 0.983 27 H 0.026 0.974 28 H 0.016 0.984 29 H 0.260 0.740 30 H 0.166 0.834 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.661 3.407 17.092 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.054 3.946 3 H 0.105 0.895 4 N -0.301 5.301 5 C -0.061 4.061 6 C -0.013 4.013 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.531 5.531 11 Si 0.720 3.280 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.036 4.036 16 N -0.185 5.185 17 C -0.179 4.179 18 C -0.204 4.204 19 N -0.175 5.175 20 H 0.251 0.749 21 H 0.072 0.928 22 H 0.088 0.912 23 H 0.083 0.917 24 H 0.167 0.833 25 H 0.075 0.925 26 H 0.036 0.964 27 H 0.045 0.955 28 H 0.034 0.966 29 H 0.070 0.930 30 H 0.183 0.817 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -3.923 2.739 16.460 17.141 hybrid contribution -0.789 1.632 -0.081 1.814 sum -4.712 4.370 16.379 17.595 Atomic orbital electron populations 1.22507 0.95991 1.02959 1.02217 1.19720 0.92231 0.95939 0.86759 0.89483 1.60304 1.56931 1.09912 1.02931 1.22232 0.98186 0.95186 0.90487 1.19066 0.97235 0.95320 0.89647 1.21204 1.43899 0.96360 0.94523 0.92741 1.25005 0.95446 0.95073 0.98853 1.69992 1.44427 1.14349 1.24331 0.86545 0.77646 0.81098 0.82725 1.19818 1.21011 1.21054 1.23416 1.02820 0.90286 0.87049 1.70303 1.15940 1.12506 1.19748 1.22421 1.06392 0.98786 0.90303 1.22639 1.10178 0.89910 0.97720 1.43268 1.51799 1.12340 1.10143 0.74868 0.92791 0.91224 0.91695 0.83266 0.92458 0.96444 0.95513 0.96612 0.93047 0.81683 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.21 9.14 37.16 0.34 -1.87 16 2 C 0.17 2.46 3.13 -68.86 -0.22 2.25 16 3 H 0.09 1.19 7.80 -51.93 -0.40 0.78 16 4 N -0.67 -12.58 6.06 -107.94 -0.65 -13.23 16 5 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 6 C 0.02 0.66 5.23 -27.88 -0.15 0.51 16 7 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.10 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 11 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 14 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 15 C 0.23 3.44 7.14 -155.42 -1.11 2.33 16 16 N -0.47 -8.03 11.01 -10.82 -0.12 -8.14 16 17 C -0.03 -0.42 11.87 -17.81 -0.21 -0.63 16 18 C -0.07 -0.78 12.04 -16.56 -0.20 -0.98 16 19 N -0.57 -6.43 6.15 -10.23 -0.06 -6.49 16 20 H 0.41 3.17 8.96 -40.82 -0.37 2.81 16 21 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.07 0.88 7.45 -51.93 -0.39 0.49 16 23 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 24 H 0.35 6.62 8.47 -39.29 -0.33 6.29 16 25 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 26 H 0.02 0.35 7.44 -51.93 -0.39 -0.04 16 27 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 30 H 0.17 1.86 8.06 -52.49 -0.42 1.44 16 31 H 0.17 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 268.80 15.07 4.05 4.05 Total: -1.00 -33.42 268.80 -7.41 -40.84 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -4.37 Total: 3.42 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -1.97 Total: -10.64 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: -0.10 Total: -54.47 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -33.42 -7.41 -40.84 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308281381.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.871 kcal (2) G-P(sol) polarization free energy of solvation -33.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds