Wall clock time and date at job start Sun Mar 29 2020 21:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47141 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47494 * 119.99680 * 11 9 7 14 14 H 1.48505 * 109.47047 * 239.99860 * 11 9 7 15 15 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 16 16 N 1.30495 * 125.65156 * 95.02563 * 15 2 1 17 17 C 1.34133 * 109.25767 * 179.97438 * 16 15 2 18 18 C 1.34667 * 108.02093 * 359.97438 * 17 16 15 19 19 N 1.35051 * 125.64785 * 274.71459 * 15 2 1 20 20 H 0.96996 * 126.39826 * 0.02562 * 19 15 2 21 21 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 22 22 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 23 23 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 24 24 H 1.00898 * 110.99743 * 321.04650 * 4 2 1 25 25 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 26 26 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 27 27 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 28 28 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 29 29 H 0.96992 * 120.00032 * 180.02562 * 10 9 7 30 30 H 1.07997 * 125.99031 * 180.02562 * 17 16 15 31 31 H 1.07995 * 126.59274 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 6 2.6611 0.4065 -4.7512 8 1 2.3651 1.4387 -4.6354 9 6 3.0973 -0.0523 -5.9760 10 7 3.4573 -1.3094 -6.1171 11 14 3.1785 1.1117 -7.4346 12 1 2.7230 2.4619 -7.0164 13 1 4.5771 1.1913 -7.9273 14 1 2.2993 0.6074 -8.5200 15 6 2.0324 -0.7105 1.2303 16 7 2.3735 -1.9683 1.2962 17 6 2.7717 -2.2539 2.5449 18 6 2.6742 -1.1301 3.2805 19 7 2.2097 -0.1495 2.4459 20 1 2.0382 0.7751 2.6837 21 1 -0.3633 0.5137 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 -0.3633 -1.0276 -0.0005 24 1 1.4496 -1.4977 -1.4102 25 1 2.7588 1.0465 -2.1182 26 1 1.0870 0.6166 -2.5526 27 1 3.5916 -0.9259 -3.3684 28 1 1.9201 -1.3564 -3.8032 29 1 3.7646 -1.6321 -6.9786 30 1 3.1118 -3.2161 2.8981 31 1 2.9183 -1.0225 4.3270 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308281381.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:21 Heat of formation + Delta-G solvation = 23.365101 kcal Electronic energy + Delta-G solvation = -13203.709792 eV Core-core repulsion = 10905.607099 eV Total energy + Delta-G solvation = -2298.102693 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.85728 -38.11765 -35.30988 -33.37979 -32.92396 -29.99558 -29.13664 -26.12762 -24.12839 -22.63448 -22.18077 -21.06715 -18.83922 -18.45542 -16.64525 -16.34961 -15.89933 -15.70986 -15.41733 -14.62003 -14.43802 -14.20782 -14.06622 -13.74569 -13.10186 -12.92480 -12.84712 -12.38299 -12.27225 -11.97531 -11.40898 -11.23340 -10.89895 -10.78847 -10.55612 -9.31885 -9.15236 -8.17858 -6.29920 1.21159 1.42016 1.42915 1.56119 2.22238 2.31561 2.43221 3.15714 3.43990 3.60607 4.03237 4.16310 4.39730 4.52805 4.58028 4.61110 4.68941 4.81345 4.88989 5.09080 5.15908 5.26965 5.47726 5.69839 5.80984 5.92989 6.15282 6.27307 6.52032 6.64337 6.88543 7.34952 7.39697 8.94931 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064317 B = 0.005532 C = 0.005322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 435.240408 B = 5060.651979 C = 5259.600223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.168 3.832 3 H 0.101 0.899 4 N -0.685 5.685 5 C 0.088 3.912 6 C 0.030 3.970 7 C -0.541 4.541 8 H 0.065 0.935 9 C -0.002 4.002 10 N -0.935 5.935 11 Si 0.970 3.030 12 H -0.258 1.258 13 H -0.280 1.280 14 H -0.278 1.278 15 C 0.206 3.794 16 N -0.518 5.518 17 C -0.072 4.072 18 C -0.039 4.039 19 N -0.557 5.557 20 H 0.433 0.567 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.052 0.948 24 H 0.342 0.658 25 H 0.061 0.939 26 H 0.030 0.970 27 H -0.012 1.012 28 H -0.011 1.011 29 H 0.263 0.737 30 H 0.177 0.823 31 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.169 5.535 18.375 19.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.055 3.945 3 H 0.119 0.881 4 N -0.316 5.316 5 C -0.040 4.040 6 C -0.007 4.007 7 C -0.579 4.579 8 H 0.083 0.917 9 C -0.200 4.200 10 N -0.575 5.575 11 Si 0.794 3.206 12 H -0.182 1.182 13 H -0.206 1.206 14 H -0.204 1.204 15 C -0.059 4.059 16 N -0.238 5.238 17 C -0.219 4.219 18 C -0.174 4.174 19 N -0.162 5.162 20 H 0.274 0.726 21 H 0.101 0.899 22 H 0.086 0.914 23 H 0.071 0.929 24 H 0.161 0.839 25 H 0.079 0.921 26 H 0.049 0.951 27 H 0.006 0.994 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.195 0.805 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -4.446 4.902 17.776 18.968 hybrid contribution -0.603 0.910 -0.363 1.151 sum -5.049 5.813 17.413 19.039 Atomic orbital electron populations 1.22395 0.94164 1.02589 1.03506 1.19795 0.93685 0.96037 0.84962 0.88067 1.60166 1.58094 1.09802 1.03533 1.21823 0.98481 0.94558 0.89186 1.18925 0.94685 0.94928 0.92207 1.21651 1.43807 0.97084 0.95393 0.91652 1.26031 0.94790 0.96838 1.02351 1.70144 1.45363 1.16634 1.25355 0.85331 0.77772 0.79124 0.78368 1.18188 1.20559 1.20401 1.23231 1.04283 0.90176 0.88219 1.70191 1.17359 1.14178 1.22052 1.22837 1.08323 1.00770 0.89967 1.23282 1.06640 0.88435 0.99018 1.43198 1.50647 1.13370 1.08944 0.72631 0.89942 0.91357 0.92897 0.83926 0.92071 0.95136 0.99352 0.99227 0.92819 0.80532 0.76565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.90 9.14 71.98 0.66 -3.25 16 2 C 0.17 4.77 3.13 44.17 0.14 4.91 16 3 H 0.10 2.55 7.80 -2.38 -0.02 2.53 16 4 N -0.69 -26.13 6.06 -495.42 -3.00 -29.13 16 5 C 0.09 3.72 5.42 86.31 0.47 4.19 16 6 C 0.03 1.66 5.23 29.85 0.16 1.81 16 7 C -0.54 -31.26 9.11 25.60 0.23 -31.03 16 8 H 0.07 3.55 7.74 -2.91 -0.02 3.53 16 9 C 0.00 -0.15 5.46 84.65 0.46 0.32 16 10 N -0.93 -58.67 13.29 21.45 0.28 -58.38 16 11 Si 0.97 44.72 29.54 68.60 2.03 46.74 16 12 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 15 C 0.21 5.95 7.14 138.12 0.99 6.94 16 16 N -0.52 -17.85 11.01 -188.14 -2.07 -19.92 16 17 C -0.07 -1.91 11.87 83.52 0.99 -0.91 16 18 C -0.04 -0.74 12.04 83.08 1.00 0.26 16 19 N -0.56 -10.94 6.15 -186.28 -1.15 -12.09 16 20 H 0.43 5.06 8.96 -92.71 -0.83 4.23 16 21 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 22 H 0.07 1.61 7.45 -2.39 -0.02 1.59 16 23 H 0.05 1.36 8.13 -2.39 -0.02 1.34 16 24 H 0.34 13.55 8.47 -89.70 -0.76 12.79 16 25 H 0.06 2.52 8.06 -2.39 -0.02 2.51 16 26 H 0.03 1.20 7.44 -2.39 -0.02 1.19 16 27 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 28 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 29 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 30 H 0.18 3.91 8.06 -2.91 -0.02 3.89 16 31 H 0.22 1.94 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -74.25 268.80 0.72 -73.52 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: -0.46 Total: 16.02 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 5.09 Total: -16.76 kcal Atomic # 7 Polarization: -113.59 SS G_CDS: -5.93 Total: -119.52 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.74 kcal Total: -74.25 0.72 -73.52 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308281381.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.887 kcal (2) G-P(sol) polarization free energy of solvation -74.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds