Wall clock time and date at job start Sun Mar 29 2020 21:51:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 110.89456 * 2 1 4 4 C 1.54992 * 110.83181 * 123.53780 * 2 1 3 5 5 C 1.54286 * 103.84015 * 155.07818 * 4 2 1 6 6 C 1.51454 * 106.84687 * 337.24095 * 5 4 2 7 7 C 1.33120 * 126.34080 * 179.52744 * 6 5 4 8 8 C 1.46955 * 119.99969 * 179.68685 * 7 6 5 9 9 O 1.21663 * 119.99991 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99955 * 179.72614 * 8 7 6 11 11 C 1.36819 * 119.99964 * 180.27514 * 10 8 7 12 12 H 1.08001 * 119.99790 * 0.02562 * 11 10 8 13 13 C 1.39073 * 119.99894 * 179.97438 * 11 10 8 14 14 N 1.31353 * 119.99961 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00172 * 0.02562 * 13 11 10 16 16 H 1.48498 * 109.47118 * 89.99626 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00146 * 15 13 11 18 18 H 1.48507 * 109.46904 * 329.99968 * 15 13 11 19 19 C 1.51847 * 107.31808 * 359.26085 * 6 5 4 20 20 H 1.09000 * 109.47544 * 182.09810 * 1 2 3 21 21 H 1.09008 * 109.46743 * 302.09323 * 1 2 3 22 22 H 1.08997 * 109.46950 * 62.09335 * 1 2 3 23 23 H 1.08998 * 110.57232 * 273.86132 * 4 2 1 24 24 H 1.09005 * 110.56926 * 36.58238 * 4 2 1 25 25 H 1.08989 * 110.10272 * 217.83097 * 5 4 2 26 26 H 1.08997 * 109.86901 * 96.51854 * 5 4 2 27 27 H 1.08001 * 120.00292 * 359.68257 * 7 6 5 28 28 H 0.97000 * 119.99736 * 0.26961 * 10 8 7 29 29 H 0.96996 * 119.99794 * 180.02562 * 14 13 11 30 30 H 1.08992 * 110.44082 * 142.76767 * 19 6 5 31 31 H 1.08996 * 110.44396 * 265.29964 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0812 -0.8003 1.2074 5 6 3.4822 -1.2501 0.7435 6 6 3.4694 -1.2336 -0.7709 7 6 4.4855 -1.5467 -1.5718 8 6 4.3163 -1.4887 -3.0305 9 8 3.2474 -1.1549 -3.5060 10 7 5.3467 -1.8004 -3.8413 11 6 5.1908 -1.7409 -5.1993 12 1 4.2422 -1.4438 -5.6214 13 6 6.2543 -2.0620 -6.0360 14 7 6.1045 -2.0054 -7.3398 15 14 7.8953 -2.5753 -5.3059 16 1 7.9169 -4.0489 -5.1240 17 1 8.9923 -2.1733 -6.2225 18 1 8.0811 -1.9114 -3.9905 19 6 2.0808 -0.8001 -1.2065 20 1 -0.3634 -1.0269 0.0376 21 1 -0.3633 0.5460 0.8707 22 1 -0.3633 0.4810 -0.9081 23 1 2.1532 -0.1630 2.0887 24 1 1.4515 -1.6661 1.4127 25 1 3.6904 -2.2577 1.1032 26 1 4.2363 -0.5575 1.1172 27 1 5.4343 -1.8434 -1.1497 28 1 6.1989 -2.0668 -3.4621 29 1 6.8461 -2.2298 -7.9233 30 1 2.1402 -0.1642 -2.0897 31 1 1.4548 -1.6702 -1.4040 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308287319.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:20 Heat of formation + Delta-G solvation = -39.921484 kcal Electronic energy + Delta-G solvation = -13404.184479 eV Core-core repulsion = 11071.044722 eV Total energy + Delta-G solvation = -2333.139756 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.84894 -37.53038 -34.01503 -32.24295 -31.63644 -29.56405 -26.87915 -25.10481 -23.38629 -19.97017 -19.76360 -18.87516 -17.26109 -16.07420 -15.31483 -14.90228 -14.32304 -13.64105 -13.48967 -13.29022 -12.93742 -12.63956 -12.30774 -12.16322 -11.74443 -11.49502 -11.21610 -10.85858 -10.75027 -10.58747 -10.40589 -10.22058 -9.98036 -9.57981 -8.53427 -8.31409 -8.15228 -6.34160 -3.79254 2.07886 3.05570 3.08810 3.15259 4.09438 4.30476 4.50819 4.86907 4.95140 5.02731 5.32739 5.40219 5.50814 5.57499 5.66452 5.70929 5.90461 5.94620 5.99563 6.05480 6.17231 6.23565 6.28861 6.60773 6.65296 6.98353 7.12215 7.59667 8.18446 8.62041 8.95884 9.44057 9.90935 10.78659 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.061259 B = 0.006860 C = 0.006237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.964667 B = 4080.903317 C = 4487.915632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.103 4.103 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.096 4.096 6 C -0.072 4.072 7 C -0.190 4.190 8 C 0.476 3.524 9 O -0.581 6.581 10 N -0.580 5.580 11 C -0.301 4.301 12 H 0.121 0.879 13 C 0.041 3.959 14 N -0.876 5.876 15 Si 0.880 3.120 16 H -0.270 1.270 17 H -0.276 1.276 18 H -0.268 1.268 19 C -0.087 4.087 20 H 0.054 0.946 21 H 0.050 0.950 22 H 0.056 0.944 23 H 0.063 0.937 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.113 0.887 28 H 0.371 0.629 29 H 0.274 0.726 30 H 0.099 0.901 31 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.151 1.131 15.959 16.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.092 0.908 4 C -0.156 4.156 5 C -0.133 4.133 6 C -0.075 4.075 7 C -0.211 4.211 8 C 0.266 3.734 9 O -0.466 6.466 10 N -0.216 5.216 11 C -0.430 4.430 12 H 0.139 0.861 13 C -0.163 4.163 14 N -0.516 5.516 15 Si 0.706 3.294 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.194 1.194 19 C -0.124 4.124 20 H 0.073 0.927 21 H 0.069 0.931 22 H 0.075 0.925 23 H 0.082 0.918 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.091 0.909 27 H 0.131 0.869 28 H 0.204 0.796 29 H 0.085 0.915 30 H 0.118 0.882 31 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -3.752 1.318 15.385 15.890 hybrid contribution 1.588 -0.502 0.400 1.712 sum -2.165 0.816 15.784 15.953 Atomic orbital electron populations 1.21726 0.95094 1.01627 1.01368 1.22210 0.95310 0.99233 0.95397 0.90798 1.22430 0.95837 0.99655 0.97670 1.21229 0.97801 1.01478 0.92770 1.22573 0.95505 0.95235 0.94180 1.22082 0.98529 1.06494 0.94006 1.17832 0.85057 0.84583 0.85942 1.90594 1.26622 1.52659 1.76758 1.42158 1.11822 1.60468 1.07198 1.19492 1.01548 1.42902 0.79027 0.86140 1.25095 0.98321 0.97655 0.95233 1.69600 1.32689 1.47088 1.02215 0.86652 0.83855 0.79595 0.79273 1.19513 1.20091 1.19350 1.21636 0.92360 1.00288 0.98110 0.92739 0.93135 0.92474 0.91837 0.91558 0.90884 0.90912 0.86915 0.79570 0.91509 0.88230 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.28 37.16 0.34 -1.23 16 2 C -0.10 -1.33 3.53 -88.57 -0.31 -1.64 16 3 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 4 C -0.12 -1.32 6.32 -25.01 -0.16 -1.48 16 5 C -0.10 -1.19 6.62 -26.84 -0.18 -1.37 16 6 C -0.07 -1.20 6.15 -100.19 -0.62 -1.82 16 7 C -0.19 -3.56 9.94 -37.83 -0.38 -3.93 16 8 C 0.48 11.48 7.71 -12.73 -0.10 11.38 16 9 O -0.58 -15.85 13.33 5.22 0.07 -15.78 16 10 N -0.58 -14.45 5.08 -12.10 -0.06 -14.51 16 11 C -0.30 -8.68 10.16 -15.02 -0.15 -8.83 16 12 H 0.12 3.94 7.38 -52.49 -0.39 3.55 16 13 C 0.04 1.12 5.50 -17.45 -0.10 1.03 16 14 N -0.88 -25.73 13.95 55.50 0.77 -24.96 16 15 Si 0.88 19.65 27.74 -169.99 -4.71 14.94 16 16 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 18 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 19 C -0.09 -1.47 4.87 -26.32 -0.13 -1.60 16 20 H 0.05 0.59 8.11 -51.93 -0.42 0.17 16 21 H 0.05 0.48 8.14 -51.92 -0.42 0.06 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 25 H 0.07 0.82 8.14 -51.94 -0.42 0.40 16 26 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 27 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 28 H 0.37 8.17 5.74 -40.82 -0.23 7.94 16 29 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.10 2.01 6.27 -51.93 -0.33 1.68 16 31 H 0.08 1.31 8.04 -51.93 -0.42 0.90 16 LS Contribution 259.69 15.07 3.91 3.91 Total: -1.00 -31.39 259.69 -6.12 -37.51 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: -4.33 Total: 8.37 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: -1.77 Total: -9.48 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.71 Total: -39.47 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: 0.07 Total: -15.78 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.94 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.39 -6.12 -37.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308287319.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.407 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds